Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.51271 * 120.88990 * 2 1 4 4 C 1.53148 * 108.58596 * 231.59992 * 3 2 1 5 5 H 1.09000 * 109.32493 * 185.92468 * 4 3 2 6 6 C 1.52845 * 109.63567 * 66.60946 * 4 3 2 7 7 C 1.53085 * 109.09202 * 299.36688 * 6 4 3 8 8 N 1.46898 * 109.08078 * 179.05265 * 7 6 4 9 9 C 1.46898 * 111.00068 * 274.02259 * 8 7 6 10 10 H 1.09004 * 109.41195 * 35.00620 * 9 8 7 11 11 C 1.52956 * 109.41457 * 154.86109 * 9 8 7 12 12 C 1.53231 * 109.40542 * 183.70680 * 11 9 8 13 13 C 1.51265 * 108.53831 * 305.37360 * 12 11 9 14 14 C 1.37877 * 120.85156 * 231.37297 * 13 12 11 15 15 N 1.31516 * 119.99677 * 348.82935 * 14 13 12 16 16 Si 1.86799 * 120.00269 * 168.83470 * 14 13 12 17 17 H 1.48498 * 109.47226 * 354.66007 * 16 14 13 18 18 H 1.48506 * 109.46845 * 114.65546 * 16 14 13 19 19 H 1.48499 * 109.47413 * 234.65826 * 16 14 13 20 20 C 1.51271 * 118.30066 * 51.34628 * 13 12 11 21 21 C 1.52963 * 109.41547 * 275.14568 * 9 8 7 22 22 C 1.53008 * 108.84930 * 298.48100 * 7 6 4 23 23 C 1.52841 * 109.55167 * 61.25154 * 22 7 6 24 24 H 1.08997 * 109.32910 * 180.76058 * 23 22 7 25 25 C 1.51269 * 120.88808 * 179.97438 * 2 1 3 26 26 C 1.52814 * 109.68117 * 305.79048 * 4 3 2 27 27 H 1.07994 * 120.00527 * 180.02562 * 1 2 3 28 28 H 1.08010 * 119.99774 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.61524 * 111.87068 * 3 2 1 30 30 H 1.08997 * 109.62036 * 351.33226 * 3 2 1 31 31 H 1.09000 * 109.46241 * 58.60135 * 6 4 3 32 32 H 1.08998 * 109.46373 * 178.56513 * 6 4 3 33 33 H 1.08995 * 110.39129 * 58.69287 * 7 6 4 34 34 H 1.00904 * 110.99809 * 150.07255 * 8 7 6 35 35 H 1.09001 * 109.48015 * 303.68736 * 11 9 8 36 36 H 1.08998 * 109.48543 * 63.71486 * 11 9 8 37 37 H 1.09003 * 109.62664 * 65.08745 * 12 11 9 38 38 H 1.09002 * 109.62351 * 185.46622 * 12 11 9 39 39 H 0.97004 * 120.00216 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.62608 * 68.37009 * 20 13 12 41 41 H 1.09004 * 109.62547 * 188.94518 * 20 13 12 42 42 H 1.08996 * 109.47943 * 296.26956 * 21 9 8 43 43 H 1.08996 * 109.47790 * 56.31334 * 21 9 8 44 44 H 1.08999 * 109.45949 * 301.22097 * 22 7 6 45 45 H 1.08996 * 109.44504 * 181.26615 * 22 7 6 46 46 H 1.08997 * 109.61851 * 8.65951 * 25 2 1 47 47 H 1.08999 * 109.77108 * 248.20242 * 25 2 1 48 48 H 1.08993 * 109.33043 * 182.82843 * 26 4 3 49 49 H 1.09006 * 109.32989 * 302.30607 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0867 1.2981 0.0000 4 6 3.1111 1.2541 -1.1376 5 1 3.7478 2.1372 -1.0841 6 6 2.3850 1.2480 -2.4826 7 6 1.4932 0.0064 -2.5646 8 7 0.7783 0.0126 -3.8478 9 6 -0.4607 0.7964 -3.7564 10 1 -0.3053 1.6430 -3.0876 11 6 -0.8414 1.3096 -5.1461 12 6 -2.0813 2.2033 -5.0368 13 6 -3.1747 1.4255 -4.3385 14 6 -4.4357 1.3298 -4.8879 15 7 -4.7675 2.0897 -5.9087 16 14 -5.6728 0.1211 -4.1822 17 1 -5.0188 -0.7001 -3.1319 18 1 -6.8114 0.8677 -3.5893 19 1 -6.1716 -0.7651 -5.2643 20 6 -2.8492 0.7547 -3.0223 21 6 -1.5818 -0.0870 -3.2063 22 6 2.3741 -1.2416 -2.4766 23 6 3.1106 -1.2544 -1.1374 24 1 3.7470 -2.1377 -1.0842 25 6 2.0866 -1.2981 0.0006 26 6 3.9737 -0.0003 -1.0051 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 2.6027 1.4158 0.9528 30 1 1.4036 2.1333 -0.1547 31 1 1.7623 2.1390 -2.5632 32 1 3.1168 1.2424 -3.2904 33 1 0.7728 0.0017 -1.7467 34 1 0.5889 -0.9278 -4.1607 35 1 -0.0137 1.8853 -5.5603 36 1 -1.0588 0.4642 -5.7989 37 1 -1.8400 3.0952 -4.4585 38 1 -2.4133 2.4923 -6.0340 39 1 -5.6545 2.0222 -6.2955 40 1 -2.6789 1.5125 -2.2575 41 1 -3.6765 0.1102 -2.7253 42 1 -1.7816 -0.8985 -3.9060 43 1 -1.2792 -0.5017 -2.2449 44 1 3.0996 -1.2320 -3.2900 45 1 1.7507 -2.1321 -2.5566 46 1 1.4035 -2.1333 -0.1536 47 1 2.6028 -1.4186 0.9530 48 1 4.7327 -0.0004 -1.7874 49 1 4.4632 -0.0003 -0.0311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257888575.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = -20.034680 kcal Electronic energy + Delta-G solvation = -25089.350797 eV Core-core repulsion = 22014.303735 eV Total energy + Delta-G solvation = -3075.047062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79945 -38.98684 -35.90327 -34.59904 -33.63439 -33.39316 -31.47595 -30.42290 -27.70321 -27.08822 -27.01341 -23.81428 -23.09256 -22.56358 -22.14371 -20.90375 -20.16098 -18.78130 -18.07797 -16.54754 -16.42823 -16.07573 -16.01025 -15.41860 -15.29678 -14.84966 -14.81796 -14.69650 -14.37899 -14.08507 -14.04183 -13.77570 -13.57630 -13.23538 -13.12207 -12.88741 -12.71909 -12.67819 -12.44211 -12.19243 -12.02280 -11.89339 -11.76354 -11.72439 -11.55059 -11.45667 -11.23541 -11.02030 -10.80799 -10.61034 -10.58341 -10.43185 -9.63639 -8.71073 -8.17304 -6.09119 1.35731 1.36185 1.39976 1.48582 2.40780 3.07233 3.37345 3.66939 3.72367 4.04306 4.12727 4.17432 4.18222 4.27441 4.32649 4.35948 4.47578 4.56216 4.62581 4.66343 4.68215 4.75872 4.84769 4.91624 4.97578 5.00892 5.04155 5.05103 5.07111 5.10337 5.12514 5.13102 5.19230 5.25661 5.29825 5.34274 5.38855 5.45511 5.51839 5.52878 5.59668 5.61190 5.63910 5.80351 5.80714 5.85182 5.96981 6.37051 6.43129 6.73192 6.96220 7.47677 8.94199 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.004659 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.997513 B = 6008.701885 C = 6401.160872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.090 4.090 3 C -0.086 4.086 4 C -0.080 4.080 5 H 0.079 0.921 6 C -0.096 4.096 7 C 0.037 3.963 8 N -0.690 5.690 9 C 0.121 3.879 10 H 0.049 0.951 11 C -0.084 4.084 12 C 0.009 3.991 13 C -0.495 4.495 14 C 0.018 3.982 15 N -0.932 5.932 16 Si 0.933 3.067 17 H -0.237 1.237 18 H -0.283 1.283 19 H -0.288 1.288 20 C -0.021 4.021 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.076 4.076 24 H 0.091 0.909 25 C -0.083 4.083 26 C -0.104 4.104 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.335 0.665 35 H 0.040 0.960 36 H 0.035 0.965 37 H -0.010 1.010 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.013 0.987 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.915 -7.976 13.588 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.099 4.099 5 H 0.097 0.903 6 C -0.134 4.134 7 C -0.071 4.071 8 N -0.319 5.319 9 C 0.011 3.989 10 H 0.068 0.932 11 C -0.122 4.122 12 C -0.029 4.029 13 C -0.514 4.514 14 C -0.179 4.179 15 N -0.572 5.572 16 Si 0.760 3.240 17 H -0.161 1.161 18 H -0.210 1.210 19 H -0.214 1.214 20 C -0.059 4.059 21 C -0.163 4.163 22 C -0.148 4.148 23 C -0.095 4.095 24 H 0.109 0.891 25 C -0.120 4.120 26 C -0.141 4.141 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.009 0.991 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.177 -7.414 13.195 23.653 hybrid contribution -1.972 -0.507 -0.069 2.037 sum 16.205 -7.921 13.126 22.308 Atomic orbital electron populations 1.23530 0.95601 1.01698 1.05389 1.21921 0.94644 0.96942 0.95535 1.20923 0.97586 0.94232 0.99521 1.21048 0.96209 0.99290 0.93370 0.90267 1.21476 0.97879 0.97022 0.97033 1.22693 0.96779 0.95451 0.92156 1.60685 1.22646 1.18297 1.30318 1.21068 0.87290 0.94867 0.95644 0.93225 1.21408 0.96247 0.98339 0.96238 1.19316 0.93245 0.93880 0.96410 1.20639 0.95359 1.30021 1.05419 1.25663 0.99490 0.97229 0.95567 1.70052 1.20920 1.39765 1.26503 0.85873 0.78851 0.80380 0.78945 1.16058 1.20951 1.21423 1.19877 0.95464 0.95402 0.95140 1.22129 0.97017 0.98150 0.98994 1.21659 0.98639 0.96395 0.98060 1.21012 0.96129 0.99149 0.93199 0.89114 1.20940 0.97603 0.93812 0.99643 1.21430 0.97074 0.92843 1.02744 0.88444 0.89679 0.89066 0.92693 0.94872 0.92464 0.88659 0.84747 0.94169 0.94589 0.99118 0.96350 0.92942 0.96817 0.94288 0.93876 0.92688 0.91875 0.92514 0.91446 0.89042 0.91435 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.49 10.90 67.77 0.74 -4.75 16 2 C -0.09 -1.87 3.14 -16.13 -0.05 -1.92 16 3 C -0.09 -1.67 5.49 30.08 0.17 -1.50 16 4 C -0.08 -1.53 3.12 -10.86 -0.03 -1.56 16 5 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.10 -2.46 4.94 30.57 0.15 -2.31 16 7 C 0.04 0.98 1.95 44.95 0.09 1.07 16 8 N -0.69 -22.10 6.03 -469.46 -2.83 -24.93 16 9 C 0.12 4.69 2.18 44.89 0.10 4.79 16 10 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 11 C -0.08 -3.77 5.54 30.66 0.17 -3.60 16 12 C 0.01 0.51 5.92 30.10 0.18 0.69 16 13 C -0.50 -26.93 5.48 -16.17 -0.09 -27.02 16 14 C 0.02 1.03 5.44 84.65 0.46 1.49 16 15 N -0.93 -56.65 12.83 21.45 0.28 -56.37 16 16 Si 0.93 43.58 27.95 68.60 1.92 45.50 16 17 H -0.24 -10.16 5.58 99.48 0.56 -9.60 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 C -0.02 -0.97 5.66 30.11 0.17 -0.80 16 21 C -0.12 -4.89 5.17 30.66 0.16 -4.73 16 22 C -0.11 -2.29 4.68 30.54 0.14 -2.15 16 23 C -0.08 -1.20 3.15 -10.86 -0.03 -1.24 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 C -0.08 -1.36 5.49 30.08 0.16 -1.19 16 26 C -0.10 -1.56 5.12 30.47 0.16 -1.40 16 27 H 0.10 2.32 7.92 -2.91 -0.02 2.30 16 28 H 0.08 2.31 7.92 -2.91 -0.02 2.29 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.24 7.89 -2.39 -0.02 1.22 16 31 H 0.03 1.00 7.44 -2.39 -0.02 0.99 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 2.60 1.86 -2.39 0.00 2.59 16 34 H 0.33 10.29 8.09 -89.69 -0.73 9.57 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.04 1.77 4.36 -2.38 -0.01 1.76 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.91 6.26 -2.39 -0.01 1.90 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 46 H 0.07 1.14 7.89 -2.39 -0.02 1.12 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -61.58 346.21 2.03 -59.55 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.04 Total: 22.39 kcal Atomic # 6 Polarization: -48.77 SS G_CDS: 2.63 Total: -46.13 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.56 Total: -81.30 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.92 Total: 45.50 kcal Total: -61.58 2.03 -59.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257888575.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.519 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds