Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51273 * 120.89368 * 2 1 4 4 C 1.53141 * 108.57920 * 231.65291 * 3 2 1 5 5 H 1.09003 * 109.32981 * 185.89926 * 4 3 2 6 6 C 1.52843 * 109.60705 * 66.59512 * 4 3 2 7 7 C 1.53010 * 109.54470 * 298.51672 * 6 4 3 8 8 N 1.46896 * 109.49993 * 179.61082 * 7 6 4 9 9 C 1.46903 * 111.00113 * 240.13923 * 8 7 6 10 10 C 1.50707 * 110.01544 * 296.57446 * 9 8 7 11 11 H 1.08001 * 119.99886 * 118.93220 * 10 9 8 12 12 C 1.37874 * 119.99929 * 298.92794 * 10 9 8 13 13 N 1.31524 * 119.99974 * 6.73485 * 12 10 9 14 14 Si 1.86795 * 120.00083 * 186.73005 * 12 10 9 15 15 H 1.48499 * 109.47135 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47309 * 120.00192 * 14 12 10 17 17 H 1.48501 * 109.47160 * 240.00369 * 14 12 10 18 18 C 1.54256 * 110.03509 * 175.17856 * 9 8 7 19 19 C 1.54960 * 104.16200 * 217.13857 * 18 9 8 20 20 C 1.54888 * 102.77802 * 37.88850 * 19 18 9 21 21 C 1.53879 * 110.03024 * 57.96098 * 9 8 7 22 22 C 1.53017 * 109.32201 * 299.57617 * 7 6 4 23 23 C 1.52835 * 109.53937 * 60.46447 * 22 7 6 24 24 H 1.08998 * 109.32762 * 180.73660 * 23 22 7 25 25 C 1.51271 * 120.89132 * 180.02562 * 2 1 3 26 26 C 1.52821 * 109.67943 * 305.75986 * 4 3 2 27 27 H 1.07997 * 120.00030 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99536 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.61957 * 111.91695 * 3 2 1 30 30 H 1.09005 * 109.76593 * 351.46611 * 3 2 1 31 31 H 1.09008 * 109.42650 * 178.51012 * 6 4 3 32 32 H 1.08997 * 109.48758 * 58.55685 * 6 4 3 33 33 H 1.08996 * 109.49999 * 59.53408 * 7 6 4 34 34 H 1.00898 * 111.00028 * 4.09231 * 8 7 6 35 35 H 0.96995 * 119.99907 * 185.00098 * 13 12 10 36 36 H 1.08998 * 110.48958 * 335.78934 * 18 9 8 37 37 H 1.09001 * 110.48598 * 98.43001 * 18 9 8 38 38 H 1.09003 * 110.72216 * 279.57500 * 19 18 9 39 39 H 1.09004 * 110.92507 * 156.30081 * 19 18 9 40 40 H 1.09000 * 110.48409 * 203.40915 * 20 19 18 41 41 H 1.08992 * 110.60022 * 80.81594 * 20 19 18 42 42 H 1.09004 * 110.03063 * 238.57205 * 21 9 8 43 43 H 1.09004 * 110.03249 * 359.95415 * 21 9 8 44 44 H 1.09004 * 109.45914 * 180.48706 * 22 7 6 45 45 H 1.09001 * 109.45988 * 300.45529 * 22 7 6 46 46 H 1.08994 * 109.62314 * 8.61893 * 25 2 1 47 47 H 1.09004 * 109.61880 * 248.08179 * 25 2 1 48 48 H 1.08999 * 109.33006 * 302.32219 * 26 4 3 49 49 H 1.08997 * 109.33081 * 182.84042 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0867 1.2981 0.0000 4 6 3.1100 1.2544 -1.1384 5 1 3.7467 2.1376 -1.0854 6 6 2.3822 1.2486 -2.4824 7 6 1.5034 0.0001 -2.5832 8 7 0.7972 0.0002 -3.8713 9 6 -0.6585 0.0047 -3.6737 10 6 -1.0880 -1.2595 -2.9747 11 1 -1.5726 -1.2057 -2.0110 12 6 -0.8625 -2.4846 -3.5655 13 7 -0.1567 -2.5608 -4.6727 14 14 -1.5590 -4.0364 -2.7934 15 1 -2.3090 -3.6826 -1.5615 16 1 -2.4733 -4.7011 -3.7564 17 1 -0.4480 -4.9591 -2.4479 18 6 -1.3761 0.1265 -5.0337 19 6 -2.5997 1.0299 -4.7371 20 6 -2.0296 2.0591 -3.7298 21 6 -1.0740 1.2326 -2.8446 22 6 2.3832 -1.2478 -2.4831 23 6 3.1102 -1.2542 -1.1387 24 1 3.7457 -2.1375 -1.0765 25 6 2.0866 -1.2981 -0.0006 26 6 3.9732 0.0002 -1.0067 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 2.6034 1.4154 0.9525 30 1 1.4054 2.1353 -0.1522 31 1 3.1135 1.2442 -3.2908 32 1 1.7586 2.1390 -2.5621 33 1 0.7774 -0.0004 -1.7702 34 1 1.0869 0.7799 -4.4424 35 1 -0.0588 -3.4117 -5.1279 36 1 -0.7234 0.5977 -5.7686 37 1 -1.7004 -0.8537 -5.3831 38 1 -3.4053 0.4517 -4.2844 39 1 -2.9454 1.5270 -5.6435 40 1 -2.8310 2.4885 -3.1285 41 1 -1.4828 2.8442 -4.2518 42 1 -1.5872 0.9142 -1.9371 43 1 -0.1955 1.8248 -2.5882 44 1 1.7603 -2.1387 -2.5633 45 1 3.1146 -1.2422 -3.2912 46 1 1.4035 -2.1333 -0.1548 47 1 2.6034 -1.4158 0.9519 48 1 4.4632 0.0001 -0.0331 49 1 4.7316 0.0003 -1.7895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257889513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = 9.492373 kcal Electronic energy + Delta-G solvation = -26326.029288 eV Core-core repulsion = 23252.262615 eV Total energy + Delta-G solvation = -3073.766673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29803 -37.48038 -33.71095 -32.72806 -32.28801 -31.84860 -28.62496 -27.45846 -26.07764 -25.64716 -25.51741 -23.61258 -20.94370 -20.92177 -19.81897 -18.63298 -18.29750 -17.30559 -15.77223 -15.23146 -14.67083 -14.49158 -14.13191 -14.03915 -13.88140 -13.69130 -13.41802 -12.76098 -12.48020 -12.34887 -12.31106 -12.05381 -11.69893 -11.50701 -11.25681 -10.98684 -10.86877 -10.58538 -10.51175 -10.44391 -10.31534 -10.28393 -10.15644 -10.12189 -9.93943 -9.80997 -9.71994 -9.37173 -9.15565 -9.03259 -8.62511 -8.17516 -7.75271 -6.46013 -5.69581 -3.83076 2.83665 3.35650 3.45663 3.48166 4.56918 5.00207 5.03504 5.15682 5.45453 5.53720 5.57144 5.65530 5.69694 5.70489 5.80495 5.85360 5.87514 5.94343 5.97463 6.08844 6.10447 6.17025 6.26786 6.39224 6.41617 6.47429 6.49161 6.50834 6.55216 6.59576 6.62223 6.74713 6.79326 6.83759 6.88927 6.94156 7.03082 7.10553 7.17463 7.24100 7.36193 7.40372 7.42146 7.60562 7.62365 7.91898 8.04760 8.47817 8.90206 9.10901 9.40034 9.82207 11.29961 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.008790 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.750585 B = 3184.823780 C = 4034.758816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C -0.078 4.078 4 C -0.078 4.078 5 H 0.057 0.943 6 C -0.133 4.133 7 C 0.067 3.933 8 N -0.643 5.643 9 C 0.250 3.750 10 C -0.501 4.501 11 H 0.050 0.950 12 C 0.086 3.914 13 N -0.836 5.836 14 Si 0.858 3.142 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.288 1.288 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.085 4.085 23 C -0.087 4.087 24 H 0.058 0.942 25 C -0.077 4.077 26 C -0.103 4.103 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.119 0.881 34 H 0.293 0.707 35 H 0.248 0.752 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 6.771 6.436 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.106 4.106 3 C -0.115 4.115 4 C -0.097 4.097 5 H 0.076 0.924 6 C -0.171 4.171 7 C -0.042 4.042 8 N -0.270 5.270 9 C 0.161 3.839 10 C -0.540 4.540 11 H 0.068 0.932 12 C -0.119 4.119 13 N -0.471 5.471 14 Si 0.686 3.314 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.214 1.214 18 C -0.130 4.130 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.189 4.189 22 C -0.124 4.124 23 C -0.106 4.106 24 H 0.077 0.923 25 C -0.114 4.114 26 C -0.140 4.140 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.709 5.934 6.219 9.802 hybrid contribution -0.467 0.015 0.505 0.688 sum 4.242 5.949 6.724 9.930 Atomic orbital electron populations 1.23500 0.94837 1.01884 1.01718 1.21511 0.94874 0.95303 0.98947 1.20799 0.97489 0.95237 0.97978 1.20963 0.96069 0.97299 0.95401 0.92408 1.22219 0.99219 0.99942 0.95744 1.22151 0.95752 0.90439 0.95882 1.60791 1.06600 1.45997 1.13566 1.19131 0.83901 0.90611 0.90252 1.20905 1.38621 0.89760 1.04704 0.93178 1.24835 0.94095 0.97566 0.95409 1.70202 1.35976 1.23851 1.17092 0.87116 0.79044 0.85519 0.79724 1.20079 1.21396 1.21414 1.22236 0.94106 0.98693 0.97987 1.22478 0.99411 0.97179 0.96960 1.22293 0.98309 0.97441 0.97922 1.23212 0.97398 0.98723 0.99613 1.21393 0.97661 1.00844 0.92466 1.21128 0.96046 0.96590 0.96847 0.92340 1.20793 0.97675 0.95343 0.97631 1.21392 0.97342 0.94829 1.00451 0.89135 0.87986 0.91847 0.91924 0.92945 0.93329 0.86410 0.89105 0.94139 0.95039 0.90514 0.92163 0.94085 0.93866 0.93575 0.92577 0.94216 0.90604 0.94007 0.91119 0.92277 0.93006 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 10.67 29.01 0.31 -2.81 16 2 C -0.11 -1.71 3.15 -100.51 -0.32 -2.03 16 3 C -0.08 -1.11 5.49 -27.53 -0.15 -1.26 16 4 C -0.08 -1.14 3.12 -90.72 -0.28 -1.42 16 5 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.13 -2.24 4.41 -26.81 -0.12 -2.35 16 7 C 0.07 1.31 1.03 -67.70 -0.07 1.24 16 8 N -0.64 -14.21 5.27 -93.07 -0.49 -14.70 16 9 C 0.25 5.61 0.40 -131.63 -0.05 5.56 16 10 C -0.50 -12.47 7.00 -34.44 -0.24 -12.71 16 11 H 0.05 1.28 6.64 -52.49 -0.35 0.93 16 12 C 0.09 2.24 4.58 -17.82 -0.08 2.16 16 13 N -0.84 -22.53 11.52 55.43 0.64 -21.89 16 14 Si 0.86 20.51 29.55 -169.99 -5.02 15.49 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 C -0.09 -2.07 5.63 -25.04 -0.14 -2.21 16 19 C -0.12 -2.38 6.91 -24.70 -0.17 -2.55 16 20 C -0.12 -2.22 6.83 -25.07 -0.17 -2.39 16 21 C -0.15 -2.99 4.84 -25.61 -0.12 -3.11 16 22 C -0.09 -1.72 5.04 -26.81 -0.14 -1.85 16 23 C -0.09 -1.43 3.12 -90.73 -0.28 -1.71 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 C -0.08 -1.25 5.50 -27.53 -0.15 -1.40 16 26 C -0.10 -1.47 5.12 -26.91 -0.14 -1.61 16 27 H 0.09 1.48 7.41 -52.49 -0.39 1.09 16 28 H 0.10 1.89 7.50 -52.48 -0.39 1.50 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.05 0.82 6.81 -51.93 -0.35 0.46 16 33 H 0.12 2.29 1.14 -51.93 -0.06 2.23 16 34 H 0.29 6.31 7.85 -39.29 -0.31 6.00 16 35 H 0.25 6.62 8.32 -40.82 -0.34 6.28 16 36 H 0.03 0.70 7.83 -51.93 -0.41 0.29 16 37 H 0.08 1.96 6.55 -51.93 -0.34 1.62 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.15 6.08 -51.93 -0.32 0.84 16 43 H 0.04 0.77 5.66 -51.93 -0.29 0.47 16 44 H 0.08 1.81 7.83 -51.93 -0.41 1.41 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.25 7.89 -51.93 -0.41 0.84 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -25.76 343.60 -10.66 -36.42 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.64 Total: 9.98 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -2.32 Total: -30.47 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.15 Total: -36.59 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -25.76 -10.66 -36.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257889513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.909 kcal (2) G-P(sol) polarization free energy of solvation -25.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds