Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51273 * 120.89368 * 2 1 4 4 C 1.53141 * 108.57920 * 231.65291 * 3 2 1 5 5 H 1.09003 * 109.32981 * 185.89926 * 4 3 2 6 6 C 1.52843 * 109.60705 * 66.59512 * 4 3 2 7 7 C 1.53010 * 109.54470 * 298.51672 * 6 4 3 8 8 N 1.46896 * 109.49993 * 179.61082 * 7 6 4 9 9 C 1.46903 * 111.00113 * 240.13923 * 8 7 6 10 10 C 1.50707 * 110.01544 * 296.57446 * 9 8 7 11 11 H 1.08001 * 119.99886 * 118.93220 * 10 9 8 12 12 C 1.37874 * 119.99929 * 298.92794 * 10 9 8 13 13 N 1.31524 * 119.99974 * 6.73485 * 12 10 9 14 14 Si 1.86795 * 120.00083 * 186.73005 * 12 10 9 15 15 H 1.48499 * 109.47135 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47309 * 120.00192 * 14 12 10 17 17 H 1.48501 * 109.47160 * 240.00369 * 14 12 10 18 18 C 1.54256 * 110.03509 * 175.17856 * 9 8 7 19 19 C 1.54960 * 104.16200 * 217.13857 * 18 9 8 20 20 C 1.54888 * 102.77802 * 37.88850 * 19 18 9 21 21 C 1.53879 * 110.03024 * 57.96098 * 9 8 7 22 22 C 1.53017 * 109.32201 * 299.57617 * 7 6 4 23 23 C 1.52835 * 109.53937 * 60.46447 * 22 7 6 24 24 H 1.08998 * 109.32762 * 180.73660 * 23 22 7 25 25 C 1.51271 * 120.89132 * 180.02562 * 2 1 3 26 26 C 1.52821 * 109.67943 * 305.75986 * 4 3 2 27 27 H 1.07997 * 120.00030 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99536 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.61957 * 111.91695 * 3 2 1 30 30 H 1.09005 * 109.76593 * 351.46611 * 3 2 1 31 31 H 1.09008 * 109.42650 * 178.51012 * 6 4 3 32 32 H 1.08997 * 109.48758 * 58.55685 * 6 4 3 33 33 H 1.08996 * 109.49999 * 59.53408 * 7 6 4 34 34 H 1.00898 * 111.00028 * 4.09231 * 8 7 6 35 35 H 0.96995 * 119.99907 * 185.00098 * 13 12 10 36 36 H 1.08998 * 110.48958 * 335.78934 * 18 9 8 37 37 H 1.09001 * 110.48598 * 98.43001 * 18 9 8 38 38 H 1.09003 * 110.72216 * 279.57500 * 19 18 9 39 39 H 1.09004 * 110.92507 * 156.30081 * 19 18 9 40 40 H 1.09000 * 110.48409 * 203.40915 * 20 19 18 41 41 H 1.08992 * 110.60022 * 80.81594 * 20 19 18 42 42 H 1.09004 * 110.03063 * 238.57205 * 21 9 8 43 43 H 1.09004 * 110.03249 * 359.95415 * 21 9 8 44 44 H 1.09004 * 109.45914 * 180.48706 * 22 7 6 45 45 H 1.09001 * 109.45988 * 300.45529 * 22 7 6 46 46 H 1.08994 * 109.62314 * 8.61893 * 25 2 1 47 47 H 1.09004 * 109.61880 * 248.08179 * 25 2 1 48 48 H 1.08999 * 109.33006 * 302.32219 * 26 4 3 49 49 H 1.08997 * 109.33081 * 182.84042 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0867 1.2981 0.0000 4 6 3.1100 1.2544 -1.1384 5 1 3.7467 2.1376 -1.0854 6 6 2.3822 1.2486 -2.4824 7 6 1.5034 0.0001 -2.5832 8 7 0.7972 0.0002 -3.8713 9 6 -0.6585 0.0047 -3.6737 10 6 -1.0880 -1.2595 -2.9747 11 1 -1.5726 -1.2057 -2.0110 12 6 -0.8625 -2.4846 -3.5655 13 7 -0.1567 -2.5608 -4.6727 14 14 -1.5590 -4.0364 -2.7934 15 1 -2.3090 -3.6826 -1.5615 16 1 -2.4733 -4.7011 -3.7564 17 1 -0.4480 -4.9591 -2.4479 18 6 -1.3761 0.1265 -5.0337 19 6 -2.5997 1.0299 -4.7371 20 6 -2.0296 2.0591 -3.7298 21 6 -1.0740 1.2326 -2.8446 22 6 2.3832 -1.2478 -2.4831 23 6 3.1102 -1.2542 -1.1387 24 1 3.7457 -2.1375 -1.0765 25 6 2.0866 -1.2981 -0.0006 26 6 3.9732 0.0002 -1.0067 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 2.6034 1.4154 0.9525 30 1 1.4054 2.1353 -0.1522 31 1 3.1135 1.2442 -3.2908 32 1 1.7586 2.1390 -2.5621 33 1 0.7774 -0.0004 -1.7702 34 1 1.0869 0.7799 -4.4424 35 1 -0.0588 -3.4117 -5.1279 36 1 -0.7234 0.5977 -5.7686 37 1 -1.7004 -0.8537 -5.3831 38 1 -3.4053 0.4517 -4.2844 39 1 -2.9454 1.5270 -5.6435 40 1 -2.8310 2.4885 -3.1285 41 1 -1.4828 2.8442 -4.2518 42 1 -1.5872 0.9142 -1.9371 43 1 -0.1955 1.8248 -2.5882 44 1 1.7603 -2.1387 -2.5633 45 1 3.1146 -1.2422 -3.2912 46 1 1.4035 -2.1333 -0.1548 47 1 2.6034 -1.4158 0.9519 48 1 4.4632 0.0001 -0.0331 49 1 4.7316 0.0003 -1.7895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257889513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -2.334642 kcal Electronic energy + Delta-G solvation = -26326.542146 eV Core-core repulsion = 23252.262615 eV Total energy + Delta-G solvation = -3074.279531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65626 -39.12929 -35.17223 -34.31831 -33.79942 -33.40167 -30.20872 -29.12014 -27.80617 -26.93529 -26.89851 -25.40881 -22.37717 -22.23051 -21.38225 -20.33119 -19.79660 -18.68681 -17.58887 -16.72883 -16.51633 -16.01523 -15.70790 -15.44520 -15.29689 -15.05498 -14.71717 -14.23747 -14.08819 -14.00694 -13.74358 -13.40462 -13.36656 -13.02073 -12.88150 -12.65144 -12.53299 -12.27730 -12.16677 -11.94061 -11.86706 -11.67087 -11.63611 -11.55452 -11.46319 -11.36204 -11.25120 -11.03575 -10.65534 -10.54397 -10.51875 -10.15345 -9.13824 -8.16053 -7.70832 -5.88231 1.36389 1.43838 1.48195 1.53265 2.55171 3.42780 3.77404 3.80512 3.87158 4.20140 4.22696 4.26761 4.27532 4.30911 4.38954 4.44256 4.50222 4.62805 4.71255 4.78488 4.80567 4.88766 5.01106 5.01956 5.04056 5.06929 5.11055 5.12867 5.14811 5.19787 5.22484 5.24670 5.30740 5.35978 5.37153 5.44462 5.46286 5.51900 5.60820 5.69890 5.73616 5.87363 5.92819 5.95912 6.02160 6.12723 6.14706 6.55947 7.00957 7.35194 7.62644 7.79312 9.24525 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.008790 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.750585 B = 3184.823780 C = 4034.758816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.075 4.075 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.128 4.128 7 C 0.061 3.939 8 N -0.663 5.663 9 C 0.246 3.754 10 C -0.493 4.493 11 H 0.039 0.961 12 C 0.052 3.948 13 N -0.858 5.858 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.290 1.290 17 H -0.295 1.295 18 C -0.093 4.093 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.141 4.141 22 C -0.079 4.079 23 C -0.085 4.085 24 H 0.064 0.936 25 C -0.079 4.079 26 C -0.098 4.098 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.294 0.706 35 H 0.241 0.759 36 H 0.028 0.972 37 H 0.039 0.961 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 9.383 8.116 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.099 4.099 3 C -0.112 4.112 4 C -0.094 4.094 5 H 0.106 0.894 6 C -0.166 4.166 7 C -0.047 4.047 8 N -0.290 5.290 9 C 0.157 3.843 10 C -0.532 4.532 11 H 0.057 0.943 12 C -0.150 4.150 13 N -0.495 5.495 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.216 1.216 17 H -0.222 1.222 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.181 4.181 22 C -0.118 4.118 23 C -0.104 4.104 24 H 0.082 0.918 25 C -0.117 4.117 26 C -0.136 4.136 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.787 8.545 7.913 13.004 hybrid contribution -0.803 -0.868 -0.038 1.183 sum 4.984 7.677 7.875 12.074 Atomic orbital electron populations 1.23374 0.95418 1.01036 1.03900 1.21762 0.94673 0.96456 0.97011 1.20860 0.97390 0.93680 0.99311 1.20992 0.96210 0.98588 0.93625 0.89362 1.22124 0.98817 0.98125 0.97548 1.22252 0.96155 0.91606 0.94723 1.60631 1.06624 1.46442 1.15318 1.19085 0.84265 0.90652 0.90299 1.21081 1.37317 0.90912 1.03930 0.94328 1.25228 0.94704 0.99294 0.95806 1.70305 1.37484 1.23553 1.18160 0.86497 0.78204 0.83622 0.79132 1.19788 1.21606 1.22191 1.22154 0.95584 0.97479 0.97947 1.22419 0.97671 0.96979 0.98421 1.22262 0.98513 0.97057 0.97383 1.23038 0.98108 0.97907 0.99054 1.21281 0.96875 0.99187 0.94439 1.21091 0.96194 0.98654 0.94438 0.91802 1.20817 0.97349 0.94565 0.98931 1.21380 0.96863 0.93041 1.02277 0.88347 0.90635 0.88900 0.91432 0.93332 0.92962 0.86130 0.88918 0.94939 0.95350 0.94207 0.93085 0.91821 0.91738 0.91897 0.93532 0.93354 0.95560 0.95753 0.94041 0.89242 0.90048 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.77 10.67 67.78 0.72 -6.05 16 2 C -0.10 -3.01 3.15 -16.12 -0.05 -3.06 16 3 C -0.08 -1.83 5.49 30.08 0.17 -1.67 16 4 C -0.08 -1.87 3.12 -10.86 -0.03 -1.91 16 5 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.13 -4.02 4.41 30.55 0.13 -3.88 16 7 C 0.06 2.38 1.03 44.93 0.05 2.43 16 8 N -0.66 -29.75 5.27 -448.36 -2.36 -32.12 16 9 C 0.25 11.17 0.40 3.51 0.00 11.17 16 10 C -0.49 -25.32 7.00 25.60 0.18 -25.15 16 11 H 0.04 2.04 6.64 -2.91 -0.02 2.02 16 12 C 0.05 2.83 4.58 84.65 0.39 3.22 16 13 N -0.86 -48.46 11.52 21.45 0.25 -48.21 16 14 Si 0.90 43.84 29.55 68.60 2.03 45.86 16 15 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 17 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 18 C -0.09 -4.25 5.63 31.69 0.18 -4.07 16 19 C -0.12 -4.41 6.91 31.91 0.22 -4.19 16 20 C -0.11 -3.87 6.83 31.67 0.22 -3.65 16 21 C -0.14 -5.47 4.84 31.32 0.15 -5.32 16 22 C -0.08 -3.26 5.04 30.54 0.15 -3.11 16 23 C -0.08 -2.69 3.12 -10.86 -0.03 -2.72 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 25 C -0.08 -2.47 5.50 30.07 0.17 -2.30 16 26 C -0.10 -2.45 5.12 30.48 0.16 -2.30 16 27 H 0.10 3.11 7.41 -2.91 -0.02 3.09 16 28 H 0.08 2.92 7.50 -2.91 -0.02 2.90 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.62 7.90 -2.38 -0.02 1.60 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.61 6.81 -2.39 -0.02 1.59 16 33 H 0.12 4.67 1.14 -2.39 0.00 4.66 16 34 H 0.29 12.72 7.85 -89.70 -0.70 12.02 16 35 H 0.24 13.51 8.32 -92.71 -0.77 12.74 16 36 H 0.03 1.27 7.83 -2.39 -0.02 1.26 16 37 H 0.04 2.09 6.55 -2.39 -0.02 2.08 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.87 6.08 -2.39 -0.01 1.86 16 43 H 0.05 1.77 5.66 -2.38 -0.01 1.76 16 44 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 45 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 1.51 7.89 -2.39 -0.02 1.49 16 47 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -58.13 343.60 2.88 -55.25 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.21 Total: 31.77 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 2.76 Total: -52.55 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.12 Total: -80.33 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.13 2.88 -55.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257889513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.913 kcal (2) G-P(sol) polarization free energy of solvation -58.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds