Wall clock time and date at job start Tue Mar 31 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32442 * 1 3 3 C 1.50400 * 118.83197 * 2 1 4 4 C 1.52193 * 112.32974 * 209.45916 * 3 2 1 5 5 H 1.10568 * 107.76368 * 196.98554 * 4 3 2 6 6 C 1.51811 * 112.06378 * 78.54670 * 4 3 2 7 7 C 1.51467 * 114.64066 * 286.13165 * 6 4 3 8 8 N 1.46897 * 111.19918 * 88.39002 * 7 6 4 9 9 C 1.46849 * 111.00400 * 48.76938 * 8 7 6 10 10 C 1.53036 * 109.52374 * 185.84032 * 9 8 7 11 11 C 1.53119 * 109.27812 * 300.82091 * 10 9 8 12 12 C 1.50705 * 109.57291 * 177.59035 * 11 10 9 13 13 H 1.07998 * 120.00249 * 240.28581 * 12 11 10 14 14 C 1.37882 * 120.00008 * 60.28456 * 12 11 10 15 15 N 1.31521 * 119.99652 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46845 * 60.00397 * 16 14 12 18 18 H 1.48506 * 109.46862 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47322 * 300.00263 * 16 14 12 20 20 C 1.53116 * 109.15966 * 57.65778 * 11 10 9 21 21 C 1.46851 * 111.00137 * 172.98281 * 8 7 6 22 22 C 1.51465 * 115.15753 * 320.74254 * 7 6 4 23 23 C 1.51791 * 114.65847 * 39.19215 * 22 7 6 24 24 H 1.10574 * 107.81009 * 192.38388 * 23 22 7 25 25 C 1.50403 * 118.83388 * 178.83070 * 2 1 3 26 26 C 1.52497 * 110.69199 * 314.11413 * 4 3 2 27 27 H 1.08001 * 119.99829 * 354.88518 * 1 2 3 28 28 H 1.08000 * 120.00103 * 174.61258 * 1 2 3 29 29 H 1.09734 * 109.22851 * 330.90030 * 3 2 1 30 30 H 1.09760 * 109.16829 * 88.13158 * 3 2 1 31 31 H 1.10070 * 108.69515 * 48.40947 * 6 4 3 32 32 H 1.10076 * 108.68296 * 163.87484 * 6 4 3 33 33 H 1.11779 * 106.53914 * 202.86919 * 7 6 4 34 34 H 1.08999 * 109.46011 * 305.85806 * 9 8 7 35 35 H 1.09001 * 109.45994 * 65.82781 * 9 8 7 36 36 H 1.09002 * 109.50164 * 180.88120 * 10 9 8 37 37 H 1.08996 * 109.53296 * 60.78519 * 10 9 8 38 38 H 1.08999 * 109.52684 * 297.74919 * 11 10 9 39 39 H 0.96998 * 119.99653 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.50369 * 182.40211 * 20 11 10 41 41 H 1.09001 * 109.53913 * 62.30402 * 20 11 10 42 42 H 1.08997 * 109.46446 * 294.17494 * 21 8 7 43 43 H 1.09005 * 109.46282 * 54.15234 * 21 8 7 44 44 H 1.10083 * 109.02106 * 277.10205 * 22 7 6 45 45 H 1.10078 * 109.02970 * 161.29565 * 22 7 6 46 46 H 1.09750 * 109.17596 * 271.76347 * 25 2 1 47 47 H 1.09726 * 109.22920 * 29.02577 * 25 2 1 48 48 H 1.08931 * 109.63491 * 184.16950 * 26 4 3 49 49 H 1.08937 * 109.63022 * 304.41132 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3244 0.0000 0.0000 3 6 2.0497 1.3176 0.0000 4 6 3.4024 1.2330 -0.6924 5 1 3.9921 2.1180 -0.3898 6 6 3.2715 1.2574 -2.2046 7 6 2.7474 -0.0265 -2.8139 8 7 1.2797 -0.0255 -2.8741 9 6 0.7776 1.2254 -3.4569 10 6 -0.7501 1.2530 -3.3704 11 6 -1.3210 0.0503 -4.1268 12 6 -2.8223 0.0381 -3.9961 13 1 -3.3174 -0.8036 -3.5347 14 6 -3.5639 1.1014 -4.4657 15 7 -2.9610 2.1261 -5.0280 16 14 -5.4248 1.0860 -4.3043 17 1 -5.7965 0.9952 -2.8695 18 1 -5.9822 2.3352 -4.8825 19 1 -5.9752 -0.0849 -5.0332 20 6 -0.7451 -1.2374 -3.5314 21 6 0.7824 -1.1929 -3.6133 22 6 3.2689 -1.2996 -2.1805 23 6 3.4015 -1.2468 -0.6693 24 1 3.9909 -2.1265 -0.3505 25 6 2.0498 -1.3173 0.0269 26 6 4.1674 -0.0030 -0.2312 27 1 -0.5400 0.9316 0.0834 28 1 -0.5400 -0.9312 -0.0878 29 1 1.4309 2.0707 -0.5039 30 1 2.1939 1.6496 1.0362 31 1 2.6059 2.0870 -2.4878 32 1 4.2564 1.4854 -2.6402 33 1 3.0901 -0.0369 -3.8778 34 1 1.1879 2.0725 -2.9073 35 1 1.0834 1.2878 -4.5013 36 1 -1.1233 2.1745 -3.8173 37 1 -1.0568 1.2049 -2.3257 38 1 -1.0476 0.1189 -5.1798 39 1 -3.4828 2.8740 -5.3587 40 1 -1.1148 -2.0953 -4.0932 41 1 -1.0513 -1.3258 -2.4890 42 1 1.0882 -1.1192 -4.6569 43 1 1.1960 -2.1022 -3.1770 44 1 4.2527 -1.5386 -2.6128 45 1 2.6009 -2.1330 -2.4472 46 1 2.1957 -1.6273 1.0695 47 1 1.4304 -2.0809 -0.4603 48 1 5.1601 -0.0076 -0.6798 49 1 4.2588 0.0070 0.8542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257892795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:31 Heat of formation + Delta-G solvation = 2.828094 kcal Electronic energy + Delta-G solvation = -25640.664295 eV Core-core repulsion = 22566.608637 eV Total energy + Delta-G solvation = -3074.055658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22691 -37.50559 -34.46395 -33.03773 -32.85033 -31.34415 -29.70765 -28.75359 -26.34140 -25.70409 -25.32903 -22.50880 -22.34367 -20.92630 -20.64731 -18.71220 -18.37643 -16.97430 -16.47735 -15.63849 -15.07911 -14.47401 -14.34277 -14.24808 -13.95018 -13.85868 -13.36914 -13.03380 -12.91022 -12.77454 -12.44345 -12.18909 -12.07722 -11.98565 -11.74317 -11.24286 -11.10096 -10.96861 -10.84239 -10.73380 -10.64706 -10.42679 -10.32678 -10.19030 -10.03362 -9.86693 -9.70800 -9.56388 -9.26645 -8.79390 -8.56589 -8.24097 -8.09571 -7.35756 -5.90817 -3.95544 2.94184 3.36052 3.40452 3.43472 4.39855 4.50366 4.68589 4.77740 4.96142 5.26269 5.27331 5.37564 5.39165 5.45921 5.54997 5.58808 5.65691 5.67225 5.78366 5.87664 5.94735 5.95191 6.06178 6.08578 6.12212 6.14500 6.15549 6.28214 6.31393 6.34310 6.39204 6.46126 6.51121 6.53060 6.58380 6.68307 6.76269 6.81495 6.98584 7.20029 7.29456 7.35654 7.53434 7.57237 7.76088 7.89676 7.97859 8.16540 8.26701 8.56692 9.08064 9.68220 11.15126 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.004968 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.701090 B = 5634.807944 C = 5734.519115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.065 4.065 4 C -0.069 4.069 5 H 0.055 0.945 6 C -0.112 4.112 7 C 0.101 3.899 8 N -0.513 5.513 9 C 0.055 3.945 10 C -0.099 4.099 11 C 0.051 3.949 12 C -0.507 4.507 13 H 0.052 0.948 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.102 4.102 21 C 0.059 3.941 22 C -0.104 4.104 23 C -0.071 4.071 24 H 0.054 0.946 25 C -0.063 4.063 26 C -0.105 4.105 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.010 0.990 34 H 0.060 0.940 35 H 0.014 0.986 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.258 0.742 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.517 -3.547 8.859 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.088 4.088 5 H 0.074 0.926 6 C -0.149 4.149 7 C -0.008 4.008 8 N -0.239 5.239 9 C -0.072 4.072 10 C -0.137 4.137 11 C 0.032 3.968 12 C -0.545 4.545 13 H 0.070 0.930 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.205 1.205 20 C -0.140 4.140 21 C -0.068 4.068 22 C -0.141 4.141 23 C -0.089 4.089 24 H 0.073 0.927 25 C -0.100 4.100 26 C -0.142 4.142 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.311 -3.400 9.226 17.363 hybrid contribution -0.744 0.119 -1.007 1.258 sum 13.567 -3.280 8.219 16.198 Atomic orbital electron populations 1.23721 0.94800 1.00966 1.01946 1.21174 0.94416 0.93803 0.99735 1.20372 0.95244 0.95602 0.98986 1.20572 0.95952 0.97383 0.94881 0.92612 1.21443 1.00590 0.97886 0.94977 1.21045 0.89307 0.94215 0.96193 1.61721 1.06214 1.02726 1.53231 1.22364 0.99040 0.90635 0.95131 1.21605 0.89140 1.02922 1.00072 1.18641 0.94279 0.89532 0.94343 1.21176 0.91646 1.03534 1.38170 0.93001 1.24949 0.98020 0.95697 0.95275 1.69878 1.35007 1.07921 1.40394 0.86742 0.86313 0.77109 0.78300 1.20353 1.21454 1.20475 1.21637 0.91631 0.99874 1.00887 1.22171 0.97612 0.92731 0.94300 1.21323 1.00237 0.97683 0.94882 1.20590 0.96052 0.97326 0.94937 0.92727 1.20372 0.95185 0.95639 0.98844 1.21279 0.97845 0.94995 1.00109 0.89495 0.89329 0.91499 0.92857 0.90524 0.93000 0.97233 0.92156 0.96758 0.89530 0.93567 0.96594 0.93185 0.93825 0.92447 0.96547 0.92311 0.93078 0.91197 0.92728 0.91727 0.92479 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 13.28 28.81 0.38 -2.43 16 2 C -0.09 -1.29 3.68 -101.56 -0.37 -1.66 16 3 C -0.06 -0.86 5.20 -28.44 -0.15 -1.00 16 4 C -0.07 -0.82 2.66 -91.89 -0.24 -1.07 16 5 H 0.06 0.60 8.26 -51.03 -0.42 0.18 16 6 C -0.11 -1.47 4.76 -28.11 -0.13 -1.60 16 7 C 0.10 1.46 1.55 -69.26 -0.11 1.35 16 8 N -0.51 -8.66 2.77 -227.30 -0.63 -9.29 16 9 C 0.06 1.07 5.09 -3.83 -0.02 1.05 16 10 C -0.10 -2.31 5.12 -26.65 -0.14 -2.44 16 11 C 0.05 1.26 2.16 -91.65 -0.20 1.06 16 12 C -0.51 -13.96 8.57 -34.44 -0.29 -14.25 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 15 N -0.89 -25.60 11.37 55.43 0.63 -24.97 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.10 -2.15 5.32 -26.65 -0.14 -2.29 16 21 C 0.06 1.07 5.21 -3.83 -0.02 1.05 16 22 C -0.10 -1.31 4.83 -28.12 -0.14 -1.45 16 23 C -0.07 -0.81 2.65 -91.89 -0.24 -1.06 16 24 H 0.05 0.56 8.26 -51.03 -0.42 0.14 16 25 C -0.06 -0.81 5.21 -28.43 -0.15 -0.95 16 26 C -0.10 -1.13 5.21 -27.24 -0.14 -1.27 16 27 H 0.09 1.44 8.02 -52.49 -0.42 1.02 16 28 H 0.09 1.44 7.96 -52.49 -0.42 1.03 16 29 H 0.07 0.98 7.87 -51.51 -0.41 0.57 16 30 H 0.05 0.64 8.21 -51.50 -0.42 0.22 16 31 H 0.08 1.10 4.92 -51.32 -0.25 0.85 16 32 H 0.05 0.62 8.23 -51.32 -0.42 0.19 16 33 H 0.01 0.15 8.26 -50.32 -0.42 -0.26 16 34 H 0.06 1.09 5.44 -51.93 -0.28 0.81 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 2.28 6.18 -51.93 -0.32 1.96 16 37 H 0.05 1.10 7.81 -51.93 -0.41 0.69 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.95 5.64 -51.93 -0.29 0.65 16 44 H 0.05 0.58 8.23 -51.31 -0.42 0.16 16 45 H 0.07 0.93 5.30 -51.31 -0.27 0.66 16 46 H 0.05 0.63 8.20 -51.50 -0.42 0.21 16 47 H 0.06 0.88 7.82 -51.52 -0.40 0.48 16 48 H 0.06 0.57 8.14 -51.97 -0.42 0.14 16 49 H 0.06 0.60 8.14 -51.96 -0.42 0.18 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -27.39 348.46 -10.89 -38.28 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.92 Total: -0.39 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.20 Total: -25.36 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.00 Total: -34.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.39 -10.89 -38.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257892795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.107 kcal (2) G-P(sol) polarization free energy of solvation -27.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds