Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32442 * 1 3 3 C 1.50400 * 118.83197 * 2 1 4 4 C 1.52193 * 112.32974 * 209.45916 * 3 2 1 5 5 H 1.10568 * 107.76368 * 196.98554 * 4 3 2 6 6 C 1.51811 * 112.06378 * 78.54670 * 4 3 2 7 7 C 1.51467 * 114.64066 * 286.13165 * 6 4 3 8 8 N 1.46897 * 111.19918 * 88.39002 * 7 6 4 9 9 C 1.46849 * 111.00400 * 48.76938 * 8 7 6 10 10 C 1.53036 * 109.52374 * 185.84032 * 9 8 7 11 11 C 1.53119 * 109.27812 * 300.82091 * 10 9 8 12 12 C 1.50705 * 109.57291 * 177.59035 * 11 10 9 13 13 H 1.07998 * 120.00249 * 240.28581 * 12 11 10 14 14 C 1.37882 * 120.00008 * 60.28456 * 12 11 10 15 15 N 1.31521 * 119.99652 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46845 * 60.00397 * 16 14 12 18 18 H 1.48506 * 109.46862 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47322 * 300.00263 * 16 14 12 20 20 C 1.53116 * 109.15966 * 57.65778 * 11 10 9 21 21 C 1.46851 * 111.00137 * 172.98281 * 8 7 6 22 22 C 1.51465 * 115.15753 * 320.74254 * 7 6 4 23 23 C 1.51791 * 114.65847 * 39.19215 * 22 7 6 24 24 H 1.10574 * 107.81009 * 192.38388 * 23 22 7 25 25 C 1.50403 * 118.83388 * 178.83070 * 2 1 3 26 26 C 1.52497 * 110.69199 * 314.11413 * 4 3 2 27 27 H 1.08001 * 119.99829 * 354.88518 * 1 2 3 28 28 H 1.08000 * 120.00103 * 174.61258 * 1 2 3 29 29 H 1.09734 * 109.22851 * 330.90030 * 3 2 1 30 30 H 1.09760 * 109.16829 * 88.13158 * 3 2 1 31 31 H 1.10070 * 108.69515 * 48.40947 * 6 4 3 32 32 H 1.10076 * 108.68296 * 163.87484 * 6 4 3 33 33 H 1.11779 * 106.53914 * 202.86919 * 7 6 4 34 34 H 1.08999 * 109.46011 * 305.85806 * 9 8 7 35 35 H 1.09001 * 109.45994 * 65.82781 * 9 8 7 36 36 H 1.09002 * 109.50164 * 180.88120 * 10 9 8 37 37 H 1.08996 * 109.53296 * 60.78519 * 10 9 8 38 38 H 1.08999 * 109.52684 * 297.74919 * 11 10 9 39 39 H 0.96998 * 119.99653 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.50369 * 182.40211 * 20 11 10 41 41 H 1.09001 * 109.53913 * 62.30402 * 20 11 10 42 42 H 1.08997 * 109.46446 * 294.17494 * 21 8 7 43 43 H 1.09005 * 109.46282 * 54.15234 * 21 8 7 44 44 H 1.10083 * 109.02106 * 277.10205 * 22 7 6 45 45 H 1.10078 * 109.02970 * 161.29565 * 22 7 6 46 46 H 1.09750 * 109.17596 * 271.76347 * 25 2 1 47 47 H 1.09726 * 109.22920 * 29.02577 * 25 2 1 48 48 H 1.08931 * 109.63491 * 184.16950 * 26 4 3 49 49 H 1.08937 * 109.63022 * 304.41132 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3244 0.0000 0.0000 3 6 2.0497 1.3176 0.0000 4 6 3.4024 1.2330 -0.6924 5 1 3.9921 2.1180 -0.3898 6 6 3.2715 1.2574 -2.2046 7 6 2.7474 -0.0265 -2.8139 8 7 1.2797 -0.0255 -2.8741 9 6 0.7776 1.2254 -3.4569 10 6 -0.7501 1.2530 -3.3704 11 6 -1.3210 0.0503 -4.1268 12 6 -2.8223 0.0381 -3.9961 13 1 -3.3174 -0.8036 -3.5347 14 6 -3.5639 1.1014 -4.4657 15 7 -2.9610 2.1261 -5.0280 16 14 -5.4248 1.0860 -4.3043 17 1 -5.7965 0.9952 -2.8695 18 1 -5.9822 2.3352 -4.8825 19 1 -5.9752 -0.0849 -5.0332 20 6 -0.7451 -1.2374 -3.5314 21 6 0.7824 -1.1929 -3.6133 22 6 3.2689 -1.2996 -2.1805 23 6 3.4015 -1.2468 -0.6693 24 1 3.9909 -2.1265 -0.3505 25 6 2.0498 -1.3173 0.0269 26 6 4.1674 -0.0030 -0.2312 27 1 -0.5400 0.9316 0.0834 28 1 -0.5400 -0.9312 -0.0878 29 1 1.4309 2.0707 -0.5039 30 1 2.1939 1.6496 1.0362 31 1 2.6059 2.0870 -2.4878 32 1 4.2564 1.4854 -2.6402 33 1 3.0901 -0.0369 -3.8778 34 1 1.1879 2.0725 -2.9073 35 1 1.0834 1.2878 -4.5013 36 1 -1.1233 2.1745 -3.8173 37 1 -1.0568 1.2049 -2.3257 38 1 -1.0476 0.1189 -5.1798 39 1 -3.4828 2.8740 -5.3587 40 1 -1.1148 -2.0953 -4.0932 41 1 -1.0513 -1.3258 -2.4890 42 1 1.0882 -1.1192 -4.6569 43 1 1.1960 -2.1022 -3.1770 44 1 4.2527 -1.5386 -2.6128 45 1 2.6009 -2.1330 -2.4472 46 1 2.1957 -1.6273 1.0695 47 1 1.4304 -2.0809 -0.4603 48 1 5.1601 -0.0076 -0.6798 49 1 4.2588 0.0070 0.8542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257892795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -9.080584 kcal Electronic energy + Delta-G solvation = -25641.180694 eV Core-core repulsion = 22566.608637 eV Total energy + Delta-G solvation = -3074.572057 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36018 -38.99630 -36.02146 -34.56425 -33.86294 -33.01770 -31.34786 -30.16948 -27.41349 -27.27025 -26.70065 -24.10616 -23.83197 -22.23673 -21.83193 -20.42255 -19.63073 -18.46358 -17.99962 -17.18418 -16.45295 -16.17509 -15.59322 -15.36855 -15.22870 -14.84254 -14.74315 -14.63092 -14.40168 -14.25847 -14.02433 -13.52292 -13.44561 -13.38694 -12.94928 -12.80488 -12.65307 -12.44810 -12.23283 -12.20368 -11.99189 -11.91072 -11.83186 -11.65991 -11.52171 -11.32578 -11.09343 -10.76189 -10.70511 -10.64407 -10.34112 -10.26992 -9.29972 -8.79239 -8.05971 -6.18913 1.40005 1.41368 1.48777 1.75499 2.43987 3.04399 3.20732 3.70309 3.80600 3.96206 4.18118 4.26232 4.30399 4.36343 4.37245 4.43262 4.47057 4.50221 4.61159 4.64548 4.69085 4.72037 4.86260 4.86298 4.96851 5.00378 5.03366 5.07628 5.11634 5.11978 5.13468 5.17162 5.23054 5.27947 5.29996 5.32810 5.43877 5.52342 5.57415 5.60262 5.63698 5.66618 5.69132 6.07101 6.12398 6.16643 6.36550 6.43583 6.47776 6.54401 6.92889 7.48239 8.98131 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.004968 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.701090 B = 5634.807944 C = 5734.519115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 C -0.068 4.068 4 C -0.068 4.068 5 H 0.075 0.925 6 C -0.112 4.112 7 C 0.100 3.900 8 N -0.508 5.508 9 C 0.069 3.931 10 C -0.085 4.085 11 C 0.049 3.951 12 C -0.529 4.529 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.950 3.050 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.093 4.093 21 C 0.066 3.934 22 C -0.103 4.103 23 C -0.070 4.070 24 H 0.079 0.921 25 C -0.066 4.066 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.000 1.000 34 H 0.076 0.924 35 H -0.002 1.002 36 H 0.051 0.949 37 H 0.035 0.965 38 H -0.021 1.021 39 H 0.259 0.741 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.007 0.993 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.914 -4.530 10.368 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.072 4.072 3 C -0.105 4.105 4 C -0.087 4.087 5 H 0.093 0.907 6 C -0.149 4.149 7 C -0.008 4.008 8 N -0.233 5.233 9 C -0.058 4.058 10 C -0.123 4.123 11 C 0.030 3.970 12 C -0.567 4.567 13 H 0.066 0.934 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.775 3.225 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.131 4.131 21 C -0.061 4.061 22 C -0.141 4.141 23 C -0.088 4.088 24 H 0.097 0.903 25 C -0.103 4.103 26 C -0.138 4.138 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.094 0.906 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.053 0.947 38 H -0.003 1.003 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.718 -4.395 10.740 20.351 hybrid contribution -1.475 0.437 -1.488 2.140 sum 15.243 -3.958 9.252 18.265 Atomic orbital electron populations 1.23551 0.95716 0.99660 1.05619 1.21471 0.93869 0.95316 0.96556 1.20425 0.95814 0.94308 0.99989 1.20576 0.95260 0.99311 0.93518 0.90712 1.21448 1.01036 0.96193 0.96250 1.21243 0.86910 0.96366 0.96299 1.61683 1.08461 1.01056 1.52106 1.22098 0.96249 0.92827 0.94667 1.21307 0.92037 1.00541 0.98444 1.18604 0.93569 0.92261 0.92550 1.21541 0.93307 1.03564 1.38302 0.93394 1.25708 1.02501 0.95336 0.94964 1.70029 1.36512 1.08341 1.40923 0.85745 0.80953 0.77297 0.78458 1.19761 1.20967 1.19793 1.21472 0.93965 0.97648 1.00005 1.22080 0.95364 0.94412 0.94263 1.21331 1.01017 0.95777 0.95931 1.20605 0.95438 0.99053 0.93724 0.90253 1.20438 0.95736 0.94000 1.00134 1.21284 0.98122 0.93268 1.01092 0.91345 0.90389 0.93726 0.91192 0.92436 0.90972 0.98232 0.90580 0.98370 0.93004 0.94664 1.00335 0.93235 0.93841 0.92876 0.97495 0.89422 0.90874 0.91973 0.90893 0.92884 0.90696 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.78 13.28 66.70 0.89 -5.89 16 2 C -0.07 -1.95 3.68 -17.76 -0.07 -2.02 16 3 C -0.07 -1.68 5.20 29.49 0.15 -1.52 16 4 C -0.07 -1.38 2.66 -11.62 -0.03 -1.42 16 5 H 0.07 1.30 8.26 -1.54 -0.01 1.28 16 6 C -0.11 -2.66 4.76 29.70 0.14 -2.52 16 7 C 0.10 2.68 1.55 43.91 0.07 2.75 16 8 N -0.51 -17.00 2.77 -873.03 -2.42 -19.42 16 9 C 0.07 2.76 5.09 86.32 0.44 3.20 16 10 C -0.08 -4.17 5.12 30.65 0.16 -4.01 16 11 C 0.05 2.54 2.16 -11.46 -0.02 2.52 16 12 C -0.53 -30.26 8.57 25.60 0.22 -30.04 16 13 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 14 C 0.01 0.75 5.31 84.65 0.45 1.20 16 15 N -0.92 -54.70 11.37 21.45 0.24 -54.45 16 16 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 20 C -0.09 -4.00 5.32 30.64 0.16 -3.84 16 21 C 0.07 2.37 5.21 86.32 0.45 2.82 16 22 C -0.10 -2.23 4.83 29.69 0.14 -2.09 16 23 C -0.07 -1.30 2.65 -11.62 -0.03 -1.34 16 24 H 0.08 1.19 8.26 -1.54 -0.01 1.18 16 25 C -0.07 -1.49 5.21 29.49 0.15 -1.34 16 26 C -0.10 -1.65 5.21 30.26 0.16 -1.50 16 27 H 0.07 2.42 8.02 -2.91 -0.02 2.40 16 28 H 0.08 2.65 7.96 -2.91 -0.02 2.62 16 29 H 0.04 1.29 7.87 -2.00 -0.02 1.28 16 30 H 0.07 1.51 8.21 -1.98 -0.02 1.50 16 31 H 0.06 1.59 4.92 -1.81 -0.01 1.58 16 32 H 0.07 1.46 8.23 -1.81 -0.01 1.45 16 33 H 0.00 -0.01 8.26 -0.87 -0.01 -0.01 16 34 H 0.08 2.81 5.44 -2.39 -0.01 2.80 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.05 2.89 6.18 -2.39 -0.01 2.88 16 37 H 0.03 1.77 7.81 -2.39 -0.02 1.75 16 38 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.09 2.67 5.64 -2.38 -0.01 2.66 16 44 H 0.07 1.33 8.23 -1.81 -0.01 1.31 16 45 H 0.06 1.45 5.30 -1.81 -0.01 1.44 16 46 H 0.07 1.43 8.20 -1.99 -0.02 1.41 16 47 H 0.05 1.34 7.82 -2.00 -0.02 1.32 16 48 H 0.07 1.04 8.14 -2.42 -0.02 1.02 16 49 H 0.07 1.07 8.14 -2.42 -0.02 1.05 16 Total: -1.00 -61.80 348.46 4.22 -57.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.94 Total: 14.26 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 3.43 Total: -45.03 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.18 Total: -73.87 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -61.80 4.22 -57.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257892795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.501 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds