Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32919 * 1 3 3 C 1.50140 * 118.02427 * 2 1 4 4 C 1.51912 * 113.32862 * 198.79256 * 3 2 1 5 5 H 1.10593 * 107.90166 * 201.59289 * 4 3 2 6 6 C 1.52058 * 112.31883 * 83.17442 * 4 3 2 7 7 C 1.52008 * 113.44226 * 289.18747 * 6 4 3 8 8 N 1.46905 * 111.82517 * 81.11856 * 7 6 4 9 9 C 1.46845 * 110.99740 * 54.39281 * 8 7 6 10 10 C 1.53041 * 109.52220 * 185.84401 * 9 8 7 11 11 C 1.53120 * 109.27479 * 300.82052 * 10 9 8 12 12 C 1.53121 * 109.15978 * 57.65505 * 11 10 9 13 13 H 1.09003 * 109.50427 * 62.32931 * 12 11 10 14 14 C 1.50706 * 109.50090 * 182.40324 * 12 11 10 15 15 H 1.07997 * 120.00116 * 119.99574 * 14 12 11 16 16 C 1.37879 * 120.00092 * 299.99990 * 14 12 11 17 17 N 1.31512 * 120.00082 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 119.99956 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47396 * 89.99728 * 18 16 14 20 20 H 1.48499 * 109.47638 * 210.00084 * 18 16 14 21 21 H 1.48504 * 109.47192 * 330.00156 * 18 16 14 22 22 C 1.46839 * 111.00035 * 178.60334 * 8 7 6 23 23 C 1.51960 * 113.05823 * 313.81890 * 7 6 4 24 24 C 1.52161 * 113.24811 * 46.62325 * 23 7 6 25 25 H 1.10571 * 107.57270 * 188.59578 * 24 23 7 26 26 C 1.50138 * 118.05391 * 179.30631 * 2 1 3 27 27 C 1.52576 * 110.57784 * 305.49068 * 24 23 7 28 28 H 1.07996 * 120.00278 * 5.06370 * 1 2 3 29 29 H 1.08003 * 119.99867 * 185.07277 * 1 2 3 30 30 H 1.10025 * 108.95668 * 77.18373 * 3 2 1 31 31 H 1.09905 * 109.19562 * 320.85954 * 3 2 1 32 32 H 1.09787 * 108.92327 * 167.51557 * 6 4 3 33 33 H 1.09786 * 108.94178 * 50.87169 * 6 4 3 34 34 H 1.11464 * 106.67053 * 196.86065 * 7 6 4 35 35 H 1.09003 * 109.46067 * 305.85409 * 9 8 7 36 36 H 1.08998 * 109.46489 * 65.83607 * 9 8 7 37 37 H 1.08997 * 109.50632 * 60.75795 * 10 9 8 38 38 H 1.08993 * 109.50533 * 180.87923 * 10 9 8 39 39 H 1.09001 * 109.52244 * 177.56018 * 11 10 9 40 40 H 1.08999 * 109.52539 * 297.68504 * 11 10 9 41 41 H 0.97001 * 120.00048 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46319 * 294.17257 * 22 8 7 43 43 H 1.09005 * 109.46622 * 54.14726 * 22 8 7 44 44 H 1.09778 * 109.11810 * 285.19784 * 23 7 6 45 45 H 1.09734 * 109.19239 * 168.21469 * 23 7 6 46 46 H 1.09948 * 109.11911 * 39.59960 * 26 2 1 47 47 H 1.10038 * 108.94266 * 283.42601 * 26 2 1 48 48 H 1.08877 * 109.65569 * 180.52736 * 27 24 23 49 49 H 1.08899 * 109.63016 * 300.97317 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3292 0.0000 0.0000 3 6 2.0346 1.3254 0.0000 4 6 3.4830 1.2359 -0.4494 5 1 4.0156 2.1229 -0.0585 6 6 3.6196 1.2484 -1.9637 7 6 3.1315 -0.0301 -2.6255 8 7 1.6708 -0.0410 -2.7815 9 6 1.2092 1.1546 -3.4983 10 6 -0.3209 1.1822 -3.5146 11 6 -0.8419 -0.0819 -4.2039 12 6 -0.3073 -1.3129 -3.4667 13 1 -0.6820 -1.3153 -2.4431 14 6 -0.7672 -2.5618 -4.1737 15 1 -0.0414 -3.2564 -4.5700 16 6 -2.1147 -2.8177 -4.3147 17 7 -2.5161 -3.9078 -4.9312 18 14 -3.3702 -1.6159 -3.6300 19 1 -3.7066 -0.6071 -4.6666 20 1 -4.5989 -2.3526 -3.2392 21 1 -2.8033 -0.9324 -2.4397 22 6 1.2223 -1.2681 -3.4518 23 6 3.6358 -1.2870 -1.9363 24 6 3.4869 -1.2429 -0.4226 25 1 4.0178 -2.1202 -0.0092 26 6 2.0353 -1.3249 0.0160 27 6 4.1581 0.0036 0.1462 28 1 -0.5400 0.9316 -0.0825 29 1 -0.5400 -0.9317 0.0827 30 1 1.9988 1.7493 1.0147 31 1 1.4938 2.0226 -0.6552 32 1 4.6740 1.4074 -2.2248 33 1 3.0535 2.0989 -2.3656 34 1 3.5551 -0.0384 -3.6564 35 1 1.5831 2.0465 -2.9954 36 1 1.5828 1.1313 -4.5220 37 1 -0.6951 1.2194 -2.4916 38 1 -0.6632 2.0616 -4.0601 39 1 -1.9316 -0.0873 -4.1793 40 1 -0.5008 -0.0994 -5.2390 41 1 -3.4641 -4.0876 -5.0308 42 1 1.5960 -1.2800 -4.4756 43 1 1.6058 -2.1360 -2.9152 44 1 4.6951 -1.4329 -2.1846 45 1 3.0876 -2.1553 -2.3232 46 1 1.4983 -2.0271 -0.6377 47 1 1.9900 -1.7415 1.0335 48 1 4.0508 0.0153 1.2296 49 1 5.2148 0.0027 -0.1173 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257894921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = 6.945223 kcal Electronic energy + Delta-G solvation = -25990.548991 eV Core-core repulsion = 22916.671865 eV Total energy + Delta-G solvation = -3073.877126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30376 -37.66302 -34.52829 -33.08486 -32.78335 -31.82831 -30.14957 -28.93536 -26.47648 -25.65871 -24.75937 -23.75959 -21.81317 -21.16040 -20.51065 -18.94036 -18.54344 -17.08990 -16.52267 -16.05752 -15.16344 -14.45638 -14.43887 -14.31469 -14.06394 -13.70929 -13.38416 -13.22372 -13.15716 -12.96614 -12.58290 -12.45024 -12.17059 -12.07099 -11.84987 -11.68893 -11.20017 -11.12324 -10.96041 -10.89303 -10.73936 -10.61051 -10.28172 -10.14952 -9.99132 -9.86551 -9.76223 -9.63079 -9.34714 -9.00002 -8.81130 -8.45559 -8.10806 -7.45054 -6.01969 -4.00127 2.87444 3.32442 3.43598 3.47795 4.32706 4.47486 4.67069 4.76725 4.94442 5.23604 5.28819 5.30637 5.36219 5.41476 5.52040 5.53800 5.55428 5.63312 5.66378 5.76965 5.80115 5.90197 5.92957 6.00659 6.07951 6.09603 6.11531 6.13642 6.16721 6.23892 6.35021 6.37540 6.42916 6.43391 6.47111 6.50310 6.57304 6.61976 6.68152 6.76925 6.94386 6.94710 7.29203 7.32740 7.47279 7.56662 7.77219 7.81226 7.99226 8.58749 9.02021 9.61776 11.11472 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.006059 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.721280 B = 4620.001976 C = 4650.765604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C -0.062 4.062 4 C -0.071 4.071 5 H 0.054 0.946 6 C -0.105 4.105 7 C 0.099 3.901 8 N -0.519 5.519 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.121 4.121 12 C 0.024 3.976 13 H 0.039 0.961 14 C -0.512 4.512 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.905 5.905 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.301 1.301 21 H -0.261 1.261 22 C 0.077 3.923 23 C -0.109 4.109 24 C -0.070 4.070 25 H 0.056 0.944 26 C -0.067 4.067 27 C -0.104 4.104 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.014 0.986 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.262 0.738 42 H 0.019 0.981 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 11.090 9.583 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.067 4.067 3 C -0.099 4.099 4 C -0.089 4.089 5 H 0.072 0.928 6 C -0.143 4.143 7 C -0.010 4.010 8 N -0.244 5.244 9 C -0.065 4.065 10 C -0.155 4.155 11 C -0.158 4.158 12 C 0.005 3.995 13 H 0.057 0.943 14 C -0.550 4.550 15 H 0.088 0.912 16 C -0.131 4.131 17 N -0.543 5.543 18 Si 0.717 3.283 19 H -0.210 1.210 20 H -0.229 1.229 21 H -0.185 1.185 22 C -0.050 4.050 23 C -0.147 4.147 24 C -0.089 4.089 25 H 0.075 0.925 26 C -0.104 4.104 27 C -0.142 4.142 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.207 10.988 9.980 19.218 hybrid contribution -0.538 0.564 -0.833 1.141 sum 11.669 11.552 9.147 18.796 Atomic orbital electron populations 1.23830 0.95059 1.00716 1.04829 1.21215 0.94267 0.93885 0.97378 1.20283 0.94436 0.95335 0.99833 1.20601 0.95872 0.97509 0.94965 0.92788 1.21450 1.00104 0.97578 0.95143 1.21222 0.88861 0.94536 0.96360 1.61676 1.09289 1.02595 1.50847 1.22026 0.95949 0.93279 0.95241 1.21634 0.94607 0.98113 1.01147 1.22002 0.99034 0.95261 0.99542 1.19120 0.90683 0.92954 0.96714 0.94305 1.21050 0.92628 1.05052 1.36294 0.91192 1.24971 0.98428 0.95064 0.94624 1.69906 1.15481 1.25856 1.43084 0.86846 0.80514 0.80693 0.80210 1.20969 1.22856 1.18539 1.22127 0.97806 0.90289 0.94761 1.21482 1.00159 0.98020 0.95035 1.20589 0.95874 0.97315 0.95082 0.92524 1.20300 0.94416 0.95349 1.00305 1.21309 0.98427 0.94960 0.99490 0.89791 0.89299 0.92796 0.91721 0.92648 0.91586 0.96820 0.91686 0.96081 0.91675 0.93389 0.93861 0.92961 0.92824 0.96311 0.91215 0.92626 0.90669 0.90587 0.92845 0.92188 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.27 13.50 28.89 0.39 -2.88 16 2 C -0.07 -0.96 3.73 -101.73 -0.38 -1.34 16 3 C -0.06 -0.76 4.85 -28.71 -0.14 -0.90 16 4 C -0.07 -0.79 2.64 -91.85 -0.24 -1.03 16 5 H 0.05 0.53 8.26 -51.02 -0.42 0.11 16 6 C -0.11 -1.23 4.80 -27.72 -0.13 -1.37 16 7 C 0.10 1.38 1.55 -68.74 -0.11 1.27 16 8 N -0.52 -8.39 2.20 -226.82 -0.50 -8.89 16 9 C 0.06 1.00 5.19 -3.83 -0.02 0.98 16 10 C -0.12 -2.07 6.09 -26.65 -0.16 -2.23 16 11 C -0.12 -2.62 4.73 -26.61 -0.13 -2.75 16 12 C 0.02 0.56 1.85 -91.69 -0.17 0.39 16 13 H 0.04 0.94 7.02 -51.93 -0.36 0.58 16 14 C -0.51 -14.28 9.15 -34.44 -0.31 -14.60 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 18 Si 0.89 22.37 24.35 -169.99 -4.14 18.23 16 19 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 22 C 0.08 1.52 4.39 -3.84 -0.02 1.50 16 23 C -0.11 -1.45 4.77 -27.69 -0.13 -1.58 16 24 C -0.07 -0.86 2.65 -91.84 -0.24 -1.10 16 25 H 0.06 0.64 8.26 -51.03 -0.42 0.22 16 26 C -0.07 -0.93 4.80 -28.73 -0.14 -1.07 16 27 C -0.10 -1.11 5.20 -27.15 -0.14 -1.26 16 28 H 0.08 1.29 8.03 -52.49 -0.42 0.87 16 29 H 0.09 1.52 8.03 -52.48 -0.42 1.09 16 30 H 0.05 0.61 8.23 -51.35 -0.42 0.19 16 31 H 0.06 0.84 7.73 -51.41 -0.40 0.44 16 32 H 0.05 0.58 8.21 -51.48 -0.42 0.16 16 33 H 0.07 0.78 5.42 -51.48 -0.28 0.50 16 34 H 0.01 0.21 8.30 -50.50 -0.42 -0.21 16 35 H 0.06 0.90 5.47 -51.93 -0.28 0.62 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 1.00 3.34 -51.93 -0.17 0.83 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 1.39 5.24 -51.93 -0.27 1.12 16 44 H 0.06 0.65 8.21 -51.49 -0.42 0.23 16 45 H 0.07 1.13 5.42 -51.51 -0.28 0.85 16 46 H 0.08 1.24 7.51 -51.39 -0.39 0.86 16 47 H 0.05 0.69 8.23 -51.34 -0.42 0.27 16 48 H 0.06 0.61 8.13 -52.00 -0.42 0.19 16 49 H 0.06 0.56 8.13 -51.99 -0.42 0.13 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -29.04 340.39 -9.69 -38.73 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.78 Total: -0.04 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.17 Total: -26.01 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.27 Total: -36.04 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.04 -9.69 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257894921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.676 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds