Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32919 * 1 3 3 C 1.50140 * 118.02427 * 2 1 4 4 C 1.51912 * 113.32862 * 198.79256 * 3 2 1 5 5 H 1.10593 * 107.90166 * 201.59289 * 4 3 2 6 6 C 1.52058 * 112.31883 * 83.17442 * 4 3 2 7 7 C 1.52008 * 113.44226 * 289.18747 * 6 4 3 8 8 N 1.46905 * 111.82517 * 81.11856 * 7 6 4 9 9 C 1.46845 * 110.99740 * 54.39281 * 8 7 6 10 10 C 1.53041 * 109.52220 * 185.84401 * 9 8 7 11 11 C 1.53120 * 109.27479 * 300.82052 * 10 9 8 12 12 C 1.53121 * 109.15978 * 57.65505 * 11 10 9 13 13 H 1.09003 * 109.50427 * 62.32931 * 12 11 10 14 14 C 1.50706 * 109.50090 * 182.40324 * 12 11 10 15 15 H 1.07997 * 120.00116 * 119.99574 * 14 12 11 16 16 C 1.37879 * 120.00092 * 299.99990 * 14 12 11 17 17 N 1.31512 * 120.00082 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 119.99956 * 0.02562 * 16 14 12 19 19 H 1.48506 * 109.47396 * 89.99728 * 18 16 14 20 20 H 1.48499 * 109.47638 * 210.00084 * 18 16 14 21 21 H 1.48504 * 109.47192 * 330.00156 * 18 16 14 22 22 C 1.46839 * 111.00035 * 178.60334 * 8 7 6 23 23 C 1.51960 * 113.05823 * 313.81890 * 7 6 4 24 24 C 1.52161 * 113.24811 * 46.62325 * 23 7 6 25 25 H 1.10571 * 107.57270 * 188.59578 * 24 23 7 26 26 C 1.50138 * 118.05391 * 179.30631 * 2 1 3 27 27 C 1.52576 * 110.57784 * 305.49068 * 24 23 7 28 28 H 1.07996 * 120.00278 * 5.06370 * 1 2 3 29 29 H 1.08003 * 119.99867 * 185.07277 * 1 2 3 30 30 H 1.10025 * 108.95668 * 77.18373 * 3 2 1 31 31 H 1.09905 * 109.19562 * 320.85954 * 3 2 1 32 32 H 1.09787 * 108.92327 * 167.51557 * 6 4 3 33 33 H 1.09786 * 108.94178 * 50.87169 * 6 4 3 34 34 H 1.11464 * 106.67053 * 196.86065 * 7 6 4 35 35 H 1.09003 * 109.46067 * 305.85409 * 9 8 7 36 36 H 1.08998 * 109.46489 * 65.83607 * 9 8 7 37 37 H 1.08997 * 109.50632 * 60.75795 * 10 9 8 38 38 H 1.08993 * 109.50533 * 180.87923 * 10 9 8 39 39 H 1.09001 * 109.52244 * 177.56018 * 11 10 9 40 40 H 1.08999 * 109.52539 * 297.68504 * 11 10 9 41 41 H 0.97001 * 120.00048 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46319 * 294.17257 * 22 8 7 43 43 H 1.09005 * 109.46622 * 54.14726 * 22 8 7 44 44 H 1.09778 * 109.11810 * 285.19784 * 23 7 6 45 45 H 1.09734 * 109.19239 * 168.21469 * 23 7 6 46 46 H 1.09948 * 109.11911 * 39.59960 * 26 2 1 47 47 H 1.10038 * 108.94266 * 283.42601 * 26 2 1 48 48 H 1.08877 * 109.65569 * 180.52736 * 27 24 23 49 49 H 1.08899 * 109.63016 * 300.97317 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3292 0.0000 0.0000 3 6 2.0346 1.3254 0.0000 4 6 3.4830 1.2359 -0.4494 5 1 4.0156 2.1229 -0.0585 6 6 3.6196 1.2484 -1.9637 7 6 3.1315 -0.0301 -2.6255 8 7 1.6708 -0.0410 -2.7815 9 6 1.2092 1.1546 -3.4983 10 6 -0.3209 1.1822 -3.5146 11 6 -0.8419 -0.0819 -4.2039 12 6 -0.3073 -1.3129 -3.4667 13 1 -0.6820 -1.3153 -2.4431 14 6 -0.7672 -2.5618 -4.1737 15 1 -0.0414 -3.2564 -4.5700 16 6 -2.1147 -2.8177 -4.3147 17 7 -2.5161 -3.9078 -4.9312 18 14 -3.3702 -1.6159 -3.6300 19 1 -3.7066 -0.6071 -4.6666 20 1 -4.5989 -2.3526 -3.2392 21 1 -2.8033 -0.9324 -2.4397 22 6 1.2223 -1.2681 -3.4518 23 6 3.6358 -1.2870 -1.9363 24 6 3.4869 -1.2429 -0.4226 25 1 4.0178 -2.1202 -0.0092 26 6 2.0353 -1.3249 0.0160 27 6 4.1581 0.0036 0.1462 28 1 -0.5400 0.9316 -0.0825 29 1 -0.5400 -0.9317 0.0827 30 1 1.9988 1.7493 1.0147 31 1 1.4938 2.0226 -0.6552 32 1 4.6740 1.4074 -2.2248 33 1 3.0535 2.0989 -2.3656 34 1 3.5551 -0.0384 -3.6564 35 1 1.5831 2.0465 -2.9954 36 1 1.5828 1.1313 -4.5220 37 1 -0.6951 1.2194 -2.4916 38 1 -0.6632 2.0616 -4.0601 39 1 -1.9316 -0.0873 -4.1793 40 1 -0.5008 -0.0994 -5.2390 41 1 -3.4641 -4.0876 -5.0308 42 1 1.5960 -1.2800 -4.4756 43 1 1.6058 -2.1360 -2.9152 44 1 4.6951 -1.4329 -2.1846 45 1 3.0876 -2.1553 -2.3232 46 1 1.4983 -2.0271 -0.6377 47 1 1.9900 -1.7415 1.0335 48 1 4.0508 0.0153 1.2296 49 1 5.2148 0.0027 -0.1173 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257894921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -7.922592 kcal Electronic energy + Delta-G solvation = -25991.193708 eV Core-core repulsion = 22916.671865 eV Total energy + Delta-G solvation = -3074.521842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41455 -39.07208 -35.94565 -34.72093 -33.83272 -33.40990 -31.83898 -30.14293 -27.64364 -26.69002 -26.58894 -25.18698 -23.22588 -22.32850 -21.75559 -20.57530 -19.73627 -18.82327 -17.90472 -17.48951 -16.45188 -16.09907 -15.71357 -15.44337 -15.28950 -15.05476 -14.84613 -14.66255 -14.43248 -14.39910 -14.17828 -13.79900 -13.47368 -13.27104 -13.20205 -12.92624 -12.74862 -12.48456 -12.38909 -12.16831 -11.97384 -11.89627 -11.73264 -11.67762 -11.54288 -11.32838 -11.07552 -10.95925 -10.79187 -10.72302 -10.58189 -10.31378 -9.27979 -8.80201 -8.30896 -6.32869 1.27149 1.33972 1.45619 1.70301 2.31703 3.04406 3.05946 3.70642 3.81091 3.97726 4.09285 4.14007 4.20593 4.32153 4.33577 4.38558 4.47411 4.49388 4.52792 4.59912 4.61712 4.66839 4.81019 4.83875 4.84865 4.90536 5.00057 5.01143 5.03138 5.08789 5.12129 5.13970 5.17258 5.20638 5.25554 5.27711 5.28166 5.33995 5.50153 5.54148 5.56941 5.61807 5.67526 5.69058 5.81322 6.14716 6.25985 6.33122 6.44041 6.51834 6.75826 7.32593 8.86292 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.006059 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.721280 B = 4620.001976 C = 4650.765604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.053 4.053 3 C -0.064 4.064 4 C -0.071 4.071 5 H 0.083 0.917 6 C -0.102 4.102 7 C 0.096 3.904 8 N -0.514 5.514 9 C 0.063 3.937 10 C -0.110 4.110 11 C -0.121 4.121 12 C 0.030 3.970 13 H 0.028 0.972 14 C -0.516 4.516 15 H 0.028 0.972 16 C 0.014 3.986 17 N -0.952 5.952 18 Si 0.949 3.051 19 H -0.271 1.271 20 H -0.302 1.302 21 H -0.246 1.246 22 C 0.092 3.908 23 C -0.110 4.110 24 C -0.069 4.069 25 H 0.066 0.934 26 C -0.069 4.069 27 C -0.099 4.099 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.005 0.995 35 H 0.099 0.901 36 H 0.018 0.982 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.040 0.960 41 H 0.264 0.736 42 H 0.000 1.000 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.531 14.762 11.354 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.053 4.053 3 C -0.100 4.100 4 C -0.089 4.089 5 H 0.101 0.899 6 C -0.139 4.139 7 C -0.012 4.012 8 N -0.239 5.239 9 C -0.065 4.065 10 C -0.148 4.148 11 C -0.159 4.159 12 C 0.011 3.989 13 H 0.046 0.954 14 C -0.555 4.555 15 H 0.047 0.953 16 C -0.183 4.183 17 N -0.593 5.593 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.230 1.230 21 H -0.170 1.170 22 C -0.035 4.035 23 C -0.148 4.148 24 C -0.088 4.088 25 H 0.084 0.916 26 C -0.106 4.106 27 C -0.137 4.137 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.117 0.883 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.223 14.679 11.757 23.579 hybrid contribution -1.072 -0.710 -1.414 1.911 sum 13.151 13.969 10.343 21.796 Atomic orbital electron populations 1.23741 0.95843 0.99788 1.07758 1.21480 0.93867 0.95099 0.94823 1.20347 0.95182 0.93497 1.01012 1.20629 0.95047 0.98873 0.94375 0.89921 1.21452 1.01356 0.95597 0.95523 1.21397 0.86823 0.96467 0.96482 1.61636 1.11313 1.01121 1.49800 1.22106 0.94772 0.94051 0.95548 1.21591 0.95797 0.96581 1.00836 1.21906 0.98151 0.96666 0.99157 1.18969 0.93031 0.91599 0.95340 0.95354 1.21409 0.92034 1.06272 1.35758 0.95325 1.25799 1.00615 0.96784 0.95063 1.70053 1.16015 1.28082 1.45155 0.85824 0.77635 0.78605 0.80231 1.19705 1.22969 1.16971 1.21761 0.95512 0.92310 0.93944 1.21486 1.00797 0.96628 0.95849 1.20581 0.94656 0.99268 0.94274 0.91576 1.20316 0.95523 0.94710 1.00011 1.21305 0.99111 0.93307 0.99932 0.89267 0.91874 0.91018 0.91837 0.90437 0.91163 0.97735 0.88323 0.96422 0.91648 0.90708 0.95200 0.94085 0.92717 0.98223 0.92190 0.90673 0.93646 0.94179 0.91972 0.91205 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.30 13.50 66.65 0.90 -6.40 16 2 C -0.05 -1.41 3.73 -17.97 -0.07 -1.48 16 3 C -0.06 -1.31 4.85 29.31 0.14 -1.17 16 4 C -0.07 -1.21 2.64 -11.59 -0.03 -1.24 16 5 H 0.08 1.07 8.26 -1.53 -0.01 1.05 16 6 C -0.10 -1.91 4.80 29.96 0.14 -1.77 16 7 C 0.10 2.47 1.55 44.24 0.07 2.54 16 8 N -0.51 -16.06 2.20 -871.53 -1.92 -17.98 16 9 C 0.06 1.82 5.19 86.33 0.45 2.27 16 10 C -0.11 -3.63 6.09 30.65 0.19 -3.44 16 11 C -0.12 -5.23 4.73 30.67 0.15 -5.08 16 12 C 0.03 1.42 1.85 -11.49 -0.02 1.40 16 13 H 0.03 1.42 7.02 -2.39 -0.02 1.40 16 14 C -0.52 -30.42 9.15 25.60 0.23 -30.19 16 15 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 16 C 0.01 0.84 5.45 84.66 0.46 1.30 16 17 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 18 Si 0.95 47.31 24.35 68.60 1.67 48.98 16 19 H -0.27 -12.91 6.89 99.48 0.69 -12.22 16 20 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 21 H -0.25 -11.54 6.53 99.48 0.65 -10.89 16 22 C 0.09 3.78 4.39 86.33 0.38 4.16 16 23 C -0.11 -2.76 4.77 29.97 0.14 -2.62 16 24 C -0.07 -1.54 2.65 -11.59 -0.03 -1.57 16 25 H 0.07 1.35 8.26 -1.54 -0.01 1.34 16 26 C -0.07 -1.87 4.80 29.30 0.14 -1.73 16 27 C -0.10 -1.66 5.20 30.33 0.16 -1.50 16 28 H 0.09 2.64 8.03 -2.91 -0.02 2.61 16 29 H 0.06 2.25 8.03 -2.91 -0.02 2.22 16 30 H 0.07 1.29 8.23 -1.84 -0.02 1.28 16 31 H 0.06 1.37 7.73 -1.90 -0.01 1.35 16 32 H 0.08 1.20 8.21 -1.97 -0.02 1.18 16 33 H 0.07 1.29 5.42 -1.97 -0.01 1.28 16 34 H 0.00 0.13 8.30 -1.05 -0.01 0.12 16 35 H 0.10 2.29 5.47 -2.39 -0.01 2.27 16 36 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.36 3.34 -2.39 -0.01 1.35 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 41 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.06 2.55 5.24 -2.38 -0.01 2.54 16 44 H 0.07 1.59 8.21 -1.97 -0.02 1.58 16 45 H 0.04 1.40 5.42 -2.00 -0.01 1.39 16 46 H 0.04 1.37 7.51 -1.88 -0.01 1.36 16 47 H 0.06 1.57 8.23 -1.83 -0.02 1.55 16 48 H 0.07 1.08 8.13 -2.45 -0.02 1.06 16 49 H 0.08 1.05 8.13 -2.44 -0.02 1.03 16 Total: -1.00 -66.79 340.39 4.32 -62.48 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.87 Total: 14.18 kcal Atomic # 6 Polarization: -49.92 SS G_CDS: 3.40 Total: -46.52 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.62 Total: -79.11 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.67 Total: 48.98 kcal Total: -66.79 4.32 -62.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257894921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.554 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds