Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51269 * 120.89244 * 2 1 4 4 C 1.53146 * 108.58069 * 231.60391 * 3 2 1 5 5 H 1.09003 * 109.32508 * 186.42942 * 4 3 2 6 6 C 1.52841 * 109.63450 * 66.59498 * 4 3 2 7 7 C 1.51934 * 110.11560 * 299.08156 * 6 4 3 8 8 N 1.46894 * 109.64858 * 179.32393 * 7 6 4 9 9 C 1.46845 * 111.00119 * 58.78858 * 8 7 6 10 10 C 1.53030 * 109.52530 * 174.15830 * 9 8 7 11 11 C 1.53120 * 109.27851 * 59.17654 * 10 9 8 12 12 C 1.53113 * 109.16077 * 302.34818 * 11 10 9 13 13 H 1.09003 * 109.53669 * 297.69127 * 12 11 10 14 14 C 1.50705 * 109.50433 * 177.59929 * 12 11 10 15 15 H 1.08007 * 119.99568 * 240.19619 * 14 12 11 16 16 C 1.37876 * 120.00490 * 60.19214 * 14 12 11 17 17 N 1.31516 * 119.99597 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00218 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47019 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47311 * 120.00024 * 18 16 14 21 21 H 1.48499 * 109.47053 * 239.99863 * 18 16 14 22 22 C 1.46846 * 111.00065 * 294.57301 * 8 7 6 23 23 C 1.53009 * 109.01829 * 299.19529 * 7 6 4 24 24 C 1.52838 * 109.54604 * 60.46355 * 23 7 6 25 25 H 1.08994 * 108.90449 * 181.01045 * 24 23 7 26 26 C 1.50370 * 120.31413 * 180.67027 * 2 1 3 27 27 C 1.52816 * 109.67780 * 306.29068 * 4 3 2 28 28 H 1.08000 * 119.99643 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00147 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.61765 * 111.87443 * 3 2 1 31 31 H 1.09000 * 109.61675 * 351.32887 * 3 2 1 32 32 H 1.08997 * 109.46603 * 58.59433 * 6 4 3 33 33 H 1.09005 * 109.45452 * 178.55682 * 6 4 3 34 34 H 1.09002 * 109.62301 * 59.04718 * 7 6 4 35 35 H 1.09008 * 109.46114 * 294.17275 * 9 8 7 36 36 H 1.09002 * 109.46344 * 54.13582 * 9 8 7 37 37 H 1.08993 * 109.50422 * 299.23348 * 10 9 8 38 38 H 1.09003 * 109.50484 * 179.11618 * 10 9 8 39 39 H 1.09003 * 109.52188 * 182.43806 * 11 10 9 40 40 H 1.09003 * 109.57371 * 62.28566 * 11 10 9 41 41 H 0.96997 * 119.99557 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.46149 * 305.85570 * 22 8 7 43 43 H 1.08997 * 109.46107 * 65.83586 * 22 8 7 44 44 H 1.08999 * 109.46208 * 300.43640 * 23 7 6 45 45 H 1.09002 * 109.44821 * 180.47692 * 23 7 6 46 46 H 1.09001 * 109.84975 * 8.40346 * 26 2 1 47 47 H 1.09000 * 109.41957 * 248.02803 * 26 2 1 48 48 H 1.09004 * 109.32761 * 182.83199 * 27 4 3 49 49 H 1.08990 * 109.33130 * 302.49192 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0867 1.2981 0.0000 4 6 3.1109 1.2539 -1.1377 5 1 3.7535 2.1325 -1.0789 6 6 2.3847 1.2475 -2.4826 7 6 1.4971 0.0192 -2.5912 8 7 0.7922 0.0316 -3.8799 9 6 1.7424 0.0527 -4.9993 10 6 0.9804 -0.0817 -6.3196 11 6 -0.0149 1.0747 -6.4488 12 6 -0.9623 1.0590 -5.2460 13 1 -1.5324 0.1300 -5.2431 14 6 -1.9079 2.2291 -5.3351 15 1 -1.9239 2.9713 -4.5506 16 6 -2.7525 2.3522 -6.4179 17 7 -2.7333 1.4482 -7.3729 18 14 -3.9240 3.8029 -6.5285 19 1 -3.7507 4.6712 -5.3363 20 1 -3.6296 4.5844 -7.7564 21 1 -5.3227 3.3068 -6.5811 22 6 -0.1441 1.1603 -3.9568 23 6 2.3681 -1.2353 -2.4974 24 6 3.0938 -1.2545 -1.1524 25 1 3.7244 -2.1422 -1.1041 26 6 2.0690 -1.2980 -0.0152 27 6 3.9653 -0.0069 -1.0123 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.6028 1.4157 0.9528 31 1 1.4036 2.1332 -0.1548 32 1 1.7618 2.1383 -2.5633 33 1 3.1166 1.2419 -3.2903 34 1 0.7707 0.0195 -1.7785 35 1 2.2921 0.9939 -4.9914 36 1 2.4419 -0.7771 -4.8976 37 1 0.4415 -1.0290 -6.3340 38 1 1.6846 -0.0503 -7.1510 39 1 -0.5903 0.9591 -7.3673 40 1 0.5258 2.0208 -6.4743 41 1 -3.3272 1.5350 -8.1348 42 1 -0.8147 1.1349 -3.0980 43 1 0.4145 2.0963 -3.9539 44 1 3.1001 -1.2304 -3.3050 45 1 1.7388 -2.1212 -2.5831 46 1 1.3803 -2.1276 -0.1747 47 1 2.5840 -1.4279 0.9367 48 1 4.7245 -0.0075 -1.7945 49 1 4.4519 -0.0175 -0.0371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257894922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = 3.959660 kcal Electronic energy + Delta-G solvation = -25140.897836 eV Core-core repulsion = 22066.891247 eV Total energy + Delta-G solvation = -3074.006589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98361 -37.78199 -34.25002 -33.23289 -32.73265 -31.82688 -29.86643 -28.49811 -26.21868 -26.18771 -24.87345 -23.37521 -21.72427 -21.28770 -20.86971 -19.05081 -18.21108 -17.75355 -16.31362 -15.58146 -15.01511 -14.66714 -14.48518 -14.34597 -14.14762 -13.83682 -13.65986 -13.26396 -12.98734 -12.83224 -12.59270 -12.35053 -12.15512 -12.00006 -11.82972 -11.48739 -11.27315 -11.00607 -10.95534 -10.84919 -10.78554 -10.65512 -10.55289 -10.48628 -10.08876 -9.97878 -9.76869 -9.72180 -9.38091 -8.88767 -8.63945 -8.27674 -8.24513 -7.40645 -5.92331 -3.98002 2.29931 3.32435 3.40425 3.44091 4.42799 4.54488 4.57728 4.63255 5.00930 5.08330 5.11598 5.18570 5.23353 5.33653 5.37759 5.49196 5.56835 5.57297 5.74329 5.76873 5.83183 5.85338 5.91723 5.93756 5.98959 6.01445 6.05079 6.11639 6.18976 6.22313 6.25676 6.35405 6.45378 6.51883 6.58469 6.64177 6.70203 6.73564 6.85099 6.87511 6.89381 7.08744 7.31254 7.51020 7.80383 7.86038 8.02435 8.17267 8.25059 8.55786 9.06615 9.65970 11.13707 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.004655 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.020407 B = 6013.419994 C = 6587.882306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.082 4.082 4 C -0.078 4.078 5 H 0.066 0.934 6 C -0.145 4.145 7 C 0.048 3.952 8 N -0.529 5.529 9 C 0.058 3.942 10 C -0.118 4.118 11 C -0.109 4.109 12 C 0.054 3.946 13 H 0.033 0.967 14 C -0.511 4.511 15 H 0.052 0.948 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.071 3.929 23 C -0.105 4.105 24 C -0.082 4.082 25 H 0.068 0.932 26 C -0.082 4.082 27 C -0.107 4.107 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.022 0.978 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.027 0.973 41 H 0.258 0.742 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.809 -4.414 13.356 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.185 4.185 7 C -0.060 4.060 8 N -0.252 5.252 9 C -0.070 4.070 10 C -0.155 4.155 11 C -0.147 4.147 12 C 0.035 3.965 13 H 0.051 0.949 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.056 4.056 23 C -0.142 4.142 24 C -0.101 4.101 25 H 0.087 0.913 26 C -0.119 4.119 27 C -0.144 4.144 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.436 -4.892 13.126 18.732 hybrid contribution -0.136 1.650 -0.241 1.673 sum 12.300 -3.242 12.885 18.106 Atomic orbital electron populations 1.23627 0.94995 1.02335 1.02839 1.21546 0.95056 0.95827 0.97792 1.20851 0.97663 0.95034 0.98329 1.20971 0.96167 0.97652 0.94971 0.91556 1.22021 0.99485 1.00666 0.96279 1.22439 0.96325 0.92614 0.94598 1.62260 1.17231 1.45106 1.00592 1.22074 0.94204 0.98498 0.92237 1.21676 0.98304 1.01258 0.94307 1.21625 0.95725 0.93719 1.03635 1.18665 0.92090 0.97341 0.88365 0.94926 1.21201 1.19442 1.08605 1.05760 0.92932 1.24929 0.97041 0.96060 0.95826 1.69911 1.38431 1.34402 1.10032 0.86605 0.81022 0.82907 0.77852 1.19903 1.21158 1.21065 1.22229 0.93395 0.89127 1.00833 1.21587 0.98330 0.98749 0.95573 1.21032 0.96168 0.97732 0.95149 0.91346 1.20698 0.97818 0.95028 0.98333 1.21438 0.97419 0.94350 1.01213 0.88313 0.88199 0.91216 0.91202 0.91951 0.92267 0.86386 0.95995 0.92441 0.92278 0.93916 0.89327 0.95378 0.93207 0.92682 0.96429 0.92338 0.91562 0.91073 0.91329 0.92110 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.46 11.99 29.01 0.35 -2.11 16 2 C -0.10 -1.17 3.16 -100.95 -0.32 -1.49 16 3 C -0.08 -0.90 5.51 -27.53 -0.15 -1.05 16 4 C -0.08 -0.90 3.15 -90.72 -0.29 -1.18 16 5 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.15 -2.09 3.97 -27.35 -0.11 -2.19 16 7 C 0.05 0.73 1.89 -68.25 -0.13 0.61 16 8 N -0.53 -9.97 4.64 -227.35 -1.06 -11.03 16 9 C 0.06 1.05 4.62 -3.84 -0.02 1.04 16 10 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 12 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.75 11.36 55.43 0.63 -25.12 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.07 1.55 4.24 -3.84 -0.02 1.53 16 23 C -0.10 -1.39 4.50 -26.81 -0.12 -1.51 16 24 C -0.08 -0.87 3.12 -90.71 -0.28 -1.15 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 C -0.08 -0.84 5.45 -27.97 -0.15 -0.99 16 27 C -0.11 -1.09 5.11 -26.91 -0.14 -1.23 16 28 H 0.10 1.22 7.92 -52.49 -0.42 0.81 16 29 H 0.10 1.17 7.88 -52.49 -0.41 0.76 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 32 H 0.06 1.00 6.58 -51.93 -0.34 0.66 16 33 H 0.06 0.88 6.53 -51.93 -0.34 0.54 16 34 H 0.12 1.82 2.93 -51.93 -0.15 1.67 16 35 H 0.02 0.41 6.64 -51.92 -0.34 0.06 16 36 H 0.06 0.94 6.04 -51.93 -0.31 0.63 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 43 H 0.02 0.39 6.73 -51.93 -0.35 0.04 16 44 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -28.31 343.97 -11.28 -39.59 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.75 Total: 1.65 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.27 Total: -26.78 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.43 Total: -36.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.31 -11.28 -39.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257894922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.545 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds