Wall clock time and date at job start Tue Mar 31 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51269 * 120.89244 * 2 1 4 4 C 1.53146 * 108.58069 * 231.60391 * 3 2 1 5 5 H 1.09003 * 109.32508 * 186.42942 * 4 3 2 6 6 C 1.52841 * 109.63450 * 66.59498 * 4 3 2 7 7 C 1.51934 * 110.11560 * 299.08156 * 6 4 3 8 8 N 1.46894 * 109.64858 * 179.32393 * 7 6 4 9 9 C 1.46845 * 111.00119 * 58.78858 * 8 7 6 10 10 C 1.53030 * 109.52530 * 174.15830 * 9 8 7 11 11 C 1.53120 * 109.27851 * 59.17654 * 10 9 8 12 12 C 1.53113 * 109.16077 * 302.34818 * 11 10 9 13 13 H 1.09003 * 109.53669 * 297.69127 * 12 11 10 14 14 C 1.50705 * 109.50433 * 177.59929 * 12 11 10 15 15 H 1.08007 * 119.99568 * 240.19619 * 14 12 11 16 16 C 1.37876 * 120.00490 * 60.19214 * 14 12 11 17 17 N 1.31516 * 119.99597 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00218 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47019 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47311 * 120.00024 * 18 16 14 21 21 H 1.48499 * 109.47053 * 239.99863 * 18 16 14 22 22 C 1.46846 * 111.00065 * 294.57301 * 8 7 6 23 23 C 1.53009 * 109.01829 * 299.19529 * 7 6 4 24 24 C 1.52838 * 109.54604 * 60.46355 * 23 7 6 25 25 H 1.08994 * 108.90449 * 181.01045 * 24 23 7 26 26 C 1.50370 * 120.31413 * 180.67027 * 2 1 3 27 27 C 1.52816 * 109.67780 * 306.29068 * 4 3 2 28 28 H 1.08000 * 119.99643 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00147 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.61765 * 111.87443 * 3 2 1 31 31 H 1.09000 * 109.61675 * 351.32887 * 3 2 1 32 32 H 1.08997 * 109.46603 * 58.59433 * 6 4 3 33 33 H 1.09005 * 109.45452 * 178.55682 * 6 4 3 34 34 H 1.09002 * 109.62301 * 59.04718 * 7 6 4 35 35 H 1.09008 * 109.46114 * 294.17275 * 9 8 7 36 36 H 1.09002 * 109.46344 * 54.13582 * 9 8 7 37 37 H 1.08993 * 109.50422 * 299.23348 * 10 9 8 38 38 H 1.09003 * 109.50484 * 179.11618 * 10 9 8 39 39 H 1.09003 * 109.52188 * 182.43806 * 11 10 9 40 40 H 1.09003 * 109.57371 * 62.28566 * 11 10 9 41 41 H 0.96997 * 119.99557 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.46149 * 305.85570 * 22 8 7 43 43 H 1.08997 * 109.46107 * 65.83586 * 22 8 7 44 44 H 1.08999 * 109.46208 * 300.43640 * 23 7 6 45 45 H 1.09002 * 109.44821 * 180.47692 * 23 7 6 46 46 H 1.09001 * 109.84975 * 8.40346 * 26 2 1 47 47 H 1.09000 * 109.41957 * 248.02803 * 26 2 1 48 48 H 1.09004 * 109.32761 * 182.83199 * 27 4 3 49 49 H 1.08990 * 109.33130 * 302.49192 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0867 1.2981 0.0000 4 6 3.1109 1.2539 -1.1377 5 1 3.7535 2.1325 -1.0789 6 6 2.3847 1.2475 -2.4826 7 6 1.4971 0.0192 -2.5912 8 7 0.7922 0.0316 -3.8799 9 6 1.7424 0.0527 -4.9993 10 6 0.9804 -0.0817 -6.3196 11 6 -0.0149 1.0747 -6.4488 12 6 -0.9623 1.0590 -5.2460 13 1 -1.5324 0.1300 -5.2431 14 6 -1.9079 2.2291 -5.3351 15 1 -1.9239 2.9713 -4.5506 16 6 -2.7525 2.3522 -6.4179 17 7 -2.7333 1.4482 -7.3729 18 14 -3.9240 3.8029 -6.5285 19 1 -3.7507 4.6712 -5.3363 20 1 -3.6296 4.5844 -7.7564 21 1 -5.3227 3.3068 -6.5811 22 6 -0.1441 1.1603 -3.9568 23 6 2.3681 -1.2353 -2.4974 24 6 3.0938 -1.2545 -1.1524 25 1 3.7244 -2.1422 -1.1041 26 6 2.0690 -1.2980 -0.0152 27 6 3.9653 -0.0069 -1.0123 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.6028 1.4157 0.9528 31 1 1.4036 2.1332 -0.1548 32 1 1.7618 2.1383 -2.5633 33 1 3.1166 1.2419 -3.2903 34 1 0.7707 0.0195 -1.7785 35 1 2.2921 0.9939 -4.9914 36 1 2.4419 -0.7771 -4.8976 37 1 0.4415 -1.0290 -6.3340 38 1 1.6846 -0.0503 -7.1510 39 1 -0.5903 0.9591 -7.3673 40 1 0.5258 2.0208 -6.4743 41 1 -3.3272 1.5350 -8.1348 42 1 -0.8147 1.1349 -3.0980 43 1 0.4145 2.0963 -3.9539 44 1 3.1001 -1.2304 -3.3050 45 1 1.7388 -2.1212 -2.5831 46 1 1.3803 -2.1276 -0.1747 47 1 2.5840 -1.4279 0.9367 48 1 4.7245 -0.0075 -1.7945 49 1 4.4519 -0.0175 -0.0371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257894922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:54 Heat of formation + Delta-G solvation = -10.214074 kcal Electronic energy + Delta-G solvation = -25141.512455 eV Core-core repulsion = 22066.891247 eV Total energy + Delta-G solvation = -3074.621209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03701 -39.33649 -35.84618 -34.50301 -33.66892 -33.49567 -31.70490 -29.89947 -27.27201 -27.04950 -26.83447 -24.91590 -23.35618 -22.39499 -22.11545 -20.50319 -19.64747 -18.81303 -18.31106 -16.93809 -16.43073 -16.19848 -15.61794 -15.46500 -15.30754 -15.27661 -14.80804 -14.68483 -14.64364 -14.15468 -13.87488 -13.78157 -13.57774 -13.23173 -13.09474 -12.89819 -12.82963 -12.68328 -12.50078 -12.27796 -12.03805 -11.93441 -11.78503 -11.65224 -11.52921 -11.45919 -11.38536 -11.13761 -10.79619 -10.66746 -10.60502 -10.37478 -9.29074 -8.92067 -8.08699 -6.22902 1.37420 1.38394 1.39682 1.51344 2.41740 3.17608 3.18312 3.68002 3.70106 3.98882 4.11093 4.18424 4.19643 4.25156 4.26602 4.33135 4.37506 4.42912 4.60295 4.61811 4.64397 4.69662 4.72626 4.81969 4.90461 4.91305 4.93681 4.98610 5.01191 5.05964 5.07956 5.11879 5.13086 5.19151 5.23730 5.27277 5.38387 5.39567 5.49549 5.52157 5.54297 5.58431 5.62742 5.83193 5.97892 5.99080 6.14550 6.25697 6.50471 6.54427 6.90081 7.44871 8.96262 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.004655 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.020407 B = 6013.419994 C = 6587.882306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.096 4.096 3 C -0.083 4.083 4 C -0.075 4.075 5 H 0.078 0.922 6 C -0.141 4.141 7 C 0.043 3.957 8 N -0.540 5.540 9 C 0.064 3.936 10 C -0.111 4.111 11 C -0.101 4.101 12 C 0.053 3.947 13 H -0.006 1.006 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.091 3.909 23 C -0.101 4.101 24 C -0.077 4.077 25 H 0.091 0.909 26 C -0.082 4.082 27 C -0.104 4.104 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.022 0.978 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.045 0.955 43 H 0.011 0.989 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.051 -4.690 14.891 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.180 4.180 7 C -0.064 4.064 8 N -0.263 5.263 9 C -0.063 4.063 10 C -0.149 4.149 11 C -0.139 4.139 12 C 0.034 3.966 13 H 0.012 0.988 14 C -0.573 4.573 15 H 0.066 0.934 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.037 4.037 23 C -0.139 4.139 24 C -0.095 4.095 25 H 0.109 0.891 26 C -0.119 4.119 27 C -0.141 4.141 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.040 0.960 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.691 -5.173 14.675 21.399 hybrid contribution -0.858 1.721 -0.726 2.056 sum 13.833 -3.452 13.948 19.946 Atomic orbital electron populations 1.23632 0.95710 1.01912 1.04818 1.21783 0.94842 0.96921 0.96036 1.20895 0.97497 0.94236 0.99398 1.20969 0.96216 0.99298 0.92909 0.90358 1.21950 0.98955 0.98760 0.98322 1.22590 0.96794 0.94564 0.92411 1.62211 1.17995 1.43393 1.02684 1.22037 0.93953 0.99636 0.90697 1.21598 0.97865 0.98696 0.96762 1.21427 0.95994 0.95042 1.01467 1.18587 0.92343 0.94684 0.90982 0.98820 1.21533 1.20546 1.09312 1.05912 0.93393 1.25715 0.98604 0.98709 0.95396 1.70050 1.39065 1.35979 1.10430 0.85574 0.78822 0.79634 0.78038 1.19284 1.20495 1.20467 1.21816 0.93489 0.90083 0.98278 1.21572 0.97900 0.96790 0.97646 1.21033 0.96177 0.99129 0.93209 0.89056 1.20757 0.97765 0.93927 0.99458 1.21447 0.97042 0.92833 1.02795 0.89430 0.88212 0.88828 0.92594 0.94568 0.92638 0.86574 0.95963 0.89599 0.93280 0.91545 0.92502 0.96245 0.93071 0.93623 0.97134 0.92187 0.92428 0.91305 0.88944 0.91612 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.49 11.99 67.78 0.81 -4.68 16 2 C -0.10 -2.05 3.16 -16.41 -0.05 -2.10 16 3 C -0.08 -1.66 5.51 30.08 0.17 -1.49 16 4 C -0.07 -1.51 3.15 -10.86 -0.03 -1.54 16 5 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 6 C -0.14 -3.89 3.97 30.19 0.12 -3.77 16 7 C 0.04 1.29 1.89 44.57 0.08 1.37 16 8 N -0.54 -20.46 4.64 -873.20 -4.05 -24.52 16 9 C 0.06 2.29 4.62 86.32 0.40 2.69 16 10 C -0.11 -4.53 6.09 30.64 0.19 -4.34 16 11 C -0.10 -5.09 5.03 30.67 0.15 -4.94 16 12 C 0.05 2.83 2.26 -11.49 -0.03 2.81 16 13 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 14 C -0.53 -30.89 8.56 25.60 0.22 -30.67 16 15 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 16 C 0.01 0.82 5.30 84.65 0.45 1.27 16 17 N -0.92 -54.72 11.36 21.45 0.24 -54.48 16 18 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 C 0.09 4.12 4.24 86.33 0.37 4.48 16 23 C -0.10 -2.44 4.50 30.54 0.14 -2.31 16 24 C -0.08 -1.34 3.12 -10.86 -0.03 -1.38 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.08 -1.43 5.45 29.79 0.16 -1.27 16 27 C -0.10 -1.68 5.11 30.48 0.16 -1.52 16 28 H 0.09 2.28 7.92 -2.91 -0.02 2.26 16 29 H 0.10 2.38 7.88 -2.91 -0.02 2.36 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.27 7.89 -2.39 -0.02 1.25 16 32 H 0.04 1.17 6.58 -2.39 -0.02 1.15 16 33 H 0.05 1.56 6.53 -2.38 -0.02 1.54 16 34 H 0.12 3.57 2.93 -2.39 -0.01 3.56 16 35 H 0.02 0.80 6.64 -2.38 -0.02 0.78 16 36 H 0.09 2.61 6.04 -2.39 -0.01 2.59 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 3.21 6.17 -2.39 -0.01 3.20 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.05 2.10 8.08 -2.39 -0.02 2.08 16 43 H 0.01 0.49 6.73 -2.39 -0.02 0.47 16 44 H 0.06 1.43 6.32 -2.39 -0.02 1.41 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.26 7.85 -2.39 -0.02 1.24 16 47 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -63.29 343.97 2.38 -60.91 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.90 Total: 18.49 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 3.27 Total: -47.38 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -3.81 Total: -79.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.29 2.38 -60.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257894922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.693 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds