Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46986 * 2 1 4 4 C 1.52999 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47453 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.46545 * 305.00352 * 6 5 4 8 8 C 1.52992 * 109.47494 * 185.00577 * 6 5 4 9 9 C 1.53004 * 109.47537 * 175.00083 * 8 6 5 10 10 N 1.46499 * 109.47302 * 64.99679 * 6 5 4 11 11 C 1.36937 * 119.99463 * 60.00169 * 10 6 5 12 12 H 1.08001 * 120.00144 * 330.34114 * 11 10 6 13 13 C 1.38812 * 119.99869 * 150.34274 * 11 10 6 14 14 N 1.31615 * 120.00448 * 158.62497 * 13 11 10 15 15 Si 1.86804 * 119.99704 * 338.61843 * 13 11 10 16 16 H 1.48499 * 109.46666 * 95.28565 * 15 13 11 17 17 H 1.48496 * 109.46902 * 215.28153 * 15 13 11 18 18 H 1.48497 * 109.47368 * 335.28699 * 15 13 11 19 19 C 1.46495 * 120.00225 * 240.00403 * 10 6 5 20 20 C 1.50703 * 109.47072 * 86.31684 * 19 10 6 21 21 C 1.38237 * 119.99888 * 263.94631 * 20 19 10 22 22 C 1.38238 * 120.00046 * 179.76480 * 21 20 19 23 23 C 1.38229 * 119.99617 * 0.51135 * 22 21 20 24 24 C 1.38234 * 120.00421 * 359.74233 * 23 22 21 25 25 C 1.38233 * 120.00040 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46909 * 299.99872 * 1 2 3 28 28 H 1.08998 * 109.47226 * 60.00328 * 1 2 3 29 29 H 1.08997 * 109.47334 * 239.99762 * 2 1 3 30 30 H 1.09006 * 109.47491 * 119.99733 * 2 1 3 31 31 H 1.08997 * 109.47210 * 60.00280 * 3 2 1 32 32 H 1.09001 * 109.47331 * 299.99707 * 3 2 1 33 33 H 1.08997 * 109.47334 * 59.99762 * 4 3 2 34 34 H 1.09006 * 109.47491 * 299.99733 * 4 3 2 35 35 H 1.09007 * 109.47356 * 60.00491 * 5 4 3 36 36 H 1.09001 * 109.47522 * 299.99925 * 5 4 3 37 37 H 1.09001 * 109.46806 * 294.99856 * 8 6 5 38 38 H 1.09001 * 109.47513 * 54.99383 * 8 6 5 39 39 H 1.08993 * 109.47101 * 179.97438 * 9 8 6 40 40 H 1.09001 * 109.46887 * 299.99723 * 9 8 6 41 41 H 1.09000 * 109.46857 * 59.99476 * 9 8 6 42 42 H 0.96999 * 120.00643 * 180.02562 * 14 13 11 43 43 H 1.09006 * 109.47118 * 206.31418 * 19 10 6 44 44 H 1.08995 * 109.47363 * 326.31374 * 19 10 6 45 45 H 1.08002 * 119.99632 * 359.97438 * 21 20 19 46 46 H 1.07998 * 120.00203 * 180.22973 * 22 21 20 47 47 H 1.08003 * 119.99964 * 179.72610 * 23 22 21 48 48 H 1.08009 * 120.00232 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00387 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8851 -0.0026 7 1 5.9740 2.2957 0.8391 8 6 6.1201 4.3220 0.1226 9 6 7.6451 4.3130 0.2467 10 7 6.0974 2.3011 -1.2547 11 6 5.7655 2.8754 -2.4527 12 1 4.8308 3.4065 -2.5564 13 6 6.6304 2.7749 -3.5337 14 7 6.1746 2.9336 -4.7582 15 14 8.4414 2.4146 -3.2506 16 1 8.6823 0.9553 -3.3833 17 1 9.2543 3.1441 -4.2566 18 1 8.8270 2.8579 -1.8868 19 6 6.9396 1.1029 -1.2251 20 6 6.0659 -0.1246 -1.1941 21 6 5.7685 -0.7311 0.0121 22 6 4.9631 -1.8542 0.0410 23 6 4.4637 -2.3770 -1.1371 24 6 4.7654 -1.7737 -2.3438 25 6 5.5668 -0.6478 -2.3723 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9338 0.9286 0.8892 35 1 3.7171 3.3991 0.8888 36 1 3.7163 3.3986 -0.8913 37 1 5.8310 4.8886 -0.7626 38 1 5.6862 4.7858 1.0085 39 1 8.0084 5.3367 0.3355 40 1 7.9342 3.7464 1.1319 41 1 8.0789 3.8492 -0.6392 42 1 6.7789 2.8631 -5.5137 43 1 7.5686 1.0788 -2.1150 44 1 7.5693 1.1232 -0.3356 45 1 6.1627 -0.3253 0.9321 46 1 4.7277 -2.3258 0.9836 47 1 3.8381 -3.2571 -1.1150 48 1 4.3755 -2.1825 -3.2643 49 1 5.8029 -0.1767 -3.3150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258446972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = 23.223939 kcal Electronic energy + Delta-G solvation = -25082.300301 eV Core-core repulsion = 22009.129073 eV Total energy + Delta-G solvation = -3073.171227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.98258 -37.18426 -35.34152 -33.16733 -31.74034 -31.28119 -30.28226 -29.87159 -27.43609 -25.54889 -24.19541 -22.78217 -21.90105 -21.12631 -20.75017 -20.28470 -19.26918 -16.75222 -15.89988 -15.54176 -15.42589 -14.95743 -14.60786 -14.14365 -13.96706 -13.38576 -13.19475 -13.00591 -12.86746 -12.83658 -12.62751 -12.55984 -12.24978 -12.00024 -11.78175 -11.55592 -11.19755 -11.12652 -10.94408 -10.84787 -10.60379 -10.49859 -10.40425 -10.26772 -10.20166 -9.88540 -9.80962 -9.68170 -9.56049 -9.22718 -8.52423 -8.29542 -8.03915 -6.90934 -5.94942 -3.28747 1.96067 2.01832 3.29396 3.44694 3.49026 4.35769 4.51542 5.05889 5.12396 5.25817 5.32685 5.40564 5.42105 5.44853 5.55399 5.62150 5.72461 5.74603 5.89982 5.94130 5.95750 6.01255 6.06312 6.06756 6.11239 6.14150 6.23613 6.26364 6.32363 6.39744 6.43741 6.49879 6.53817 6.55536 6.62360 6.66222 6.68995 6.76666 6.85335 7.01169 7.05033 7.08291 7.12408 7.18591 7.21840 7.39050 7.63135 8.02758 8.38783 8.99584 9.74885 10.11664 11.20701 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.007220 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.592901 B = 3877.267924 C = 4620.296444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.116 4.116 4 C -0.111 4.111 5 C -0.126 4.126 6 C 0.180 3.820 7 H 0.049 0.951 8 C -0.128 4.128 9 C -0.151 4.151 10 N -0.587 5.587 11 C -0.246 4.246 12 H 0.085 0.915 13 C 0.029 3.971 14 N -0.903 5.903 15 Si 0.869 3.131 16 H -0.289 1.289 17 H -0.308 1.308 18 H -0.259 1.259 19 C 0.166 3.834 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.092 4.092 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.261 0.739 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -6.190 10.556 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.149 4.149 5 C -0.165 4.165 6 C 0.074 3.926 7 H 0.067 0.933 8 C -0.167 4.167 9 C -0.208 4.208 10 N -0.307 5.307 11 C -0.374 4.374 12 H 0.102 0.898 13 C -0.170 4.170 14 N -0.546 5.546 15 Si 0.702 3.298 16 H -0.218 1.218 17 H -0.237 1.237 18 H -0.185 1.185 19 C 0.041 3.959 20 C -0.079 4.079 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.110 4.110 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.017 -6.114 10.379 12.698 hybrid contribution 0.903 -0.226 -0.049 0.932 sum -3.114 -6.339 10.331 12.514 Atomic orbital electron populations 1.21783 0.96762 1.00877 1.01372 1.21484 0.94793 0.97660 1.01826 1.21598 0.97089 0.95798 1.00893 1.21641 0.93423 0.97377 1.02425 1.21947 0.97362 0.96570 1.00588 1.20422 0.92139 0.92237 0.87818 0.93290 1.21849 0.95427 0.98746 1.00671 1.21846 0.97153 0.99885 1.01907 1.44148 1.59637 1.24328 1.02601 1.18723 1.01857 1.30881 0.85964 0.89791 1.25229 0.97186 0.99405 0.95206 1.69843 1.34552 1.52543 0.97630 0.87189 0.88454 0.76350 0.77778 1.21842 1.23680 1.18516 1.20311 0.91683 0.84199 0.99731 1.20868 0.98760 0.95749 0.92570 1.20905 0.99286 0.96051 0.97196 1.20893 0.99082 0.97203 0.97368 1.20889 1.01376 1.00241 0.92899 1.21077 0.99112 0.96740 0.97375 1.21156 0.96366 0.94647 0.98875 0.93363 0.93266 0.92941 0.91958 0.92684 0.93331 0.92503 0.89818 0.93638 0.93930 0.91521 0.90990 0.93877 0.94434 0.94516 0.90882 0.92913 0.92180 0.93584 0.87321 0.87413 0.87424 0.87102 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.12 -1.75 5.21 -26.73 -0.14 -1.89 16 4 C -0.11 -1.87 4.00 -26.73 -0.11 -1.98 16 5 C -0.13 -2.20 4.62 -26.73 -0.12 -2.33 16 6 C 0.18 3.33 2.14 -67.93 -0.15 3.18 16 7 H 0.05 0.86 7.84 -51.92 -0.41 0.45 16 8 C -0.13 -2.29 5.33 -26.73 -0.14 -2.43 16 9 C -0.15 -2.66 9.80 37.16 0.36 -2.30 16 10 N -0.59 -12.48 1.10 -167.03 -0.18 -12.67 16 11 C -0.25 -6.23 8.68 -15.06 -0.13 -6.37 16 12 H 0.08 2.35 6.86 -52.49 -0.36 1.99 16 13 C 0.03 0.77 5.36 -17.43 -0.09 0.68 16 14 N -0.90 -26.38 13.97 55.49 0.78 -25.61 16 15 Si 0.87 21.18 24.36 -169.99 -4.14 17.04 16 16 H -0.29 -7.00 6.71 56.52 0.38 -6.62 16 17 H -0.31 -7.87 7.11 56.52 0.40 -7.46 16 18 H -0.26 -5.97 4.81 56.52 0.27 -5.70 16 19 C 0.17 3.42 4.42 -5.20 -0.02 3.40 16 20 C -0.08 -1.44 3.65 -104.62 -0.38 -1.83 16 21 C -0.12 -1.87 7.61 -39.58 -0.30 -2.18 16 22 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 23 C -0.14 -2.01 10.05 -39.59 -0.40 -2.41 16 24 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 25 C -0.09 -1.80 9.42 -39.58 -0.37 -2.17 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.64 5.32 -51.93 -0.28 1.37 16 34 H 0.04 0.73 7.30 -51.93 -0.38 0.35 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.33 6.78 -51.93 -0.35 0.98 16 37 H 0.07 1.45 7.50 -51.93 -0.39 1.06 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.50 5.11 -51.93 -0.27 1.24 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.06 1.38 2.29 -51.93 -0.12 1.26 16 44 H 0.05 0.87 7.90 -51.93 -0.41 0.46 16 45 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 48 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 49 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -26.88 369.35 -9.58 -36.45 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -9.01 Total: 5.78 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -2.58 Total: -26.56 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.59 Total: -38.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.88 -9.58 -36.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258446972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.675 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds