Wall clock time and date at job start Tue Mar 31 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46986 * 2 1 4 4 C 1.52999 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47453 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.46545 * 305.00352 * 6 5 4 8 8 C 1.52992 * 109.47494 * 185.00577 * 6 5 4 9 9 C 1.53004 * 109.47537 * 175.00083 * 8 6 5 10 10 N 1.46499 * 109.47302 * 64.99679 * 6 5 4 11 11 C 1.36937 * 119.99463 * 60.00169 * 10 6 5 12 12 H 1.08001 * 120.00144 * 330.34114 * 11 10 6 13 13 C 1.38812 * 119.99869 * 150.34274 * 11 10 6 14 14 N 1.31615 * 120.00448 * 158.62497 * 13 11 10 15 15 Si 1.86804 * 119.99704 * 338.61843 * 13 11 10 16 16 H 1.48499 * 109.46666 * 95.28565 * 15 13 11 17 17 H 1.48496 * 109.46902 * 215.28153 * 15 13 11 18 18 H 1.48497 * 109.47368 * 335.28699 * 15 13 11 19 19 C 1.46495 * 120.00225 * 240.00403 * 10 6 5 20 20 C 1.50703 * 109.47072 * 86.31684 * 19 10 6 21 21 C 1.38237 * 119.99888 * 263.94631 * 20 19 10 22 22 C 1.38238 * 120.00046 * 179.76480 * 21 20 19 23 23 C 1.38229 * 119.99617 * 0.51135 * 22 21 20 24 24 C 1.38234 * 120.00421 * 359.74233 * 23 22 21 25 25 C 1.38233 * 120.00040 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46909 * 299.99872 * 1 2 3 28 28 H 1.08998 * 109.47226 * 60.00328 * 1 2 3 29 29 H 1.08997 * 109.47334 * 239.99762 * 2 1 3 30 30 H 1.09006 * 109.47491 * 119.99733 * 2 1 3 31 31 H 1.08997 * 109.47210 * 60.00280 * 3 2 1 32 32 H 1.09001 * 109.47331 * 299.99707 * 3 2 1 33 33 H 1.08997 * 109.47334 * 59.99762 * 4 3 2 34 34 H 1.09006 * 109.47491 * 299.99733 * 4 3 2 35 35 H 1.09007 * 109.47356 * 60.00491 * 5 4 3 36 36 H 1.09001 * 109.47522 * 299.99925 * 5 4 3 37 37 H 1.09001 * 109.46806 * 294.99856 * 8 6 5 38 38 H 1.09001 * 109.47513 * 54.99383 * 8 6 5 39 39 H 1.08993 * 109.47101 * 179.97438 * 9 8 6 40 40 H 1.09001 * 109.46887 * 299.99723 * 9 8 6 41 41 H 1.09000 * 109.46857 * 59.99476 * 9 8 6 42 42 H 0.96999 * 120.00643 * 180.02562 * 14 13 11 43 43 H 1.09006 * 109.47118 * 206.31418 * 19 10 6 44 44 H 1.08995 * 109.47363 * 326.31374 * 19 10 6 45 45 H 1.08002 * 119.99632 * 359.97438 * 21 20 19 46 46 H 1.07998 * 120.00203 * 180.22973 * 22 21 20 47 47 H 1.08003 * 119.99964 * 179.72610 * 23 22 21 48 48 H 1.08009 * 120.00232 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00387 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8851 -0.0026 7 1 5.9740 2.2957 0.8391 8 6 6.1201 4.3220 0.1226 9 6 7.6451 4.3130 0.2467 10 7 6.0974 2.3011 -1.2547 11 6 5.7655 2.8754 -2.4527 12 1 4.8308 3.4065 -2.5564 13 6 6.6304 2.7749 -3.5337 14 7 6.1746 2.9336 -4.7582 15 14 8.4414 2.4146 -3.2506 16 1 8.6823 0.9553 -3.3833 17 1 9.2543 3.1441 -4.2566 18 1 8.8270 2.8579 -1.8868 19 6 6.9396 1.1029 -1.2251 20 6 6.0659 -0.1246 -1.1941 21 6 5.7685 -0.7311 0.0121 22 6 4.9631 -1.8542 0.0410 23 6 4.4637 -2.3770 -1.1371 24 6 4.7654 -1.7737 -2.3438 25 6 5.5668 -0.6478 -2.3723 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9338 0.9286 0.8892 35 1 3.7171 3.3991 0.8888 36 1 3.7163 3.3986 -0.8913 37 1 5.8310 4.8886 -0.7626 38 1 5.6862 4.7858 1.0085 39 1 8.0084 5.3367 0.3355 40 1 7.9342 3.7464 1.1319 41 1 8.0789 3.8492 -0.6392 42 1 6.7789 2.8631 -5.5137 43 1 7.5686 1.0788 -2.1150 44 1 7.5693 1.1232 -0.3356 45 1 6.1627 -0.3253 0.9321 46 1 4.7277 -2.3258 0.9836 47 1 3.8381 -3.2571 -1.1150 48 1 4.3755 -2.1825 -3.2643 49 1 5.8029 -0.1767 -3.3150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258446972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:37 Heat of formation + Delta-G solvation = 12.278252 kcal Electronic energy + Delta-G solvation = -25082.774941 eV Core-core repulsion = 22009.129073 eV Total energy + Delta-G solvation = -3073.645868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39720 -38.66076 -36.61798 -34.75530 -33.54286 -32.56429 -31.61165 -31.41612 -28.75096 -27.28294 -25.62803 -24.33905 -23.24190 -22.33362 -22.15164 -21.59309 -20.92220 -18.46205 -17.47841 -17.18614 -16.97130 -16.28399 -15.98257 -15.60277 -15.30279 -14.75624 -14.64120 -14.50409 -14.30778 -14.17906 -14.15374 -13.97083 -13.85894 -13.34215 -13.29347 -12.90399 -12.59253 -12.51048 -12.33487 -12.21129 -12.12694 -12.03382 -11.83057 -11.66806 -11.55482 -11.51998 -11.18987 -11.15219 -11.09757 -10.90475 -10.53151 -9.60080 -9.40099 -8.74329 -8.07146 -5.34971 0.65466 0.69895 1.30281 1.41498 1.50055 2.47254 2.96317 3.27393 3.50590 3.90759 4.07720 4.15934 4.17152 4.30614 4.31539 4.34174 4.42743 4.47071 4.48937 4.54097 4.58617 4.71782 4.73634 4.83016 4.85800 4.88675 4.94349 4.94719 4.97906 5.12281 5.16130 5.18261 5.22304 5.30415 5.32830 5.33688 5.37450 5.47679 5.50163 5.60404 5.62929 5.71772 5.74119 5.78674 5.83390 5.97558 6.05768 6.28540 6.33090 7.07383 7.77836 8.15041 9.13128 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.007220 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.592901 B = 3877.267924 C = 4620.296444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.120 4.120 6 C 0.176 3.824 7 H 0.075 0.925 8 C -0.126 4.126 9 C -0.147 4.147 10 N -0.589 5.589 11 C -0.207 4.207 12 H 0.046 0.954 13 C -0.028 4.028 14 N -0.958 5.958 15 Si 0.925 3.075 16 H -0.293 1.293 17 H -0.328 1.328 18 H -0.233 1.233 19 C 0.162 3.838 20 C -0.090 4.090 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.122 4.122 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.254 0.746 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.132 0.868 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.118 0.882 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -8.119 15.365 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.151 4.151 4 C -0.140 4.140 5 C -0.159 4.159 6 C 0.070 3.930 7 H 0.093 0.907 8 C -0.165 4.165 9 C -0.204 4.204 10 N -0.310 5.310 11 C -0.337 4.337 12 H 0.063 0.937 13 C -0.222 4.222 14 N -0.605 5.605 15 Si 0.759 3.241 16 H -0.222 1.222 17 H -0.259 1.259 18 H -0.157 1.157 19 C 0.038 3.962 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.141 4.141 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.165 0.835 47 H 0.159 0.841 48 H 0.136 0.864 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.497 -8.059 15.253 17.828 hybrid contribution 0.919 0.319 -1.452 1.748 sum -3.578 -7.740 13.801 16.223 Atomic orbital electron populations 1.21758 0.95312 1.01898 1.01578 1.21425 0.96077 0.96259 1.01478 1.21567 0.95910 0.97027 1.00613 1.21525 0.94541 0.96349 1.01595 1.21885 0.96799 0.97231 1.00021 1.20658 0.92574 0.92803 0.86929 0.90692 1.21826 0.96105 0.98024 1.00503 1.21793 0.96404 1.00880 1.01357 1.44158 1.59534 1.25105 1.02215 1.18465 0.99563 1.28326 0.87386 0.93659 1.25689 1.00544 1.01041 0.94949 1.69981 1.35412 1.56617 0.98496 0.86276 0.84066 0.75585 0.78201 1.22217 1.25885 1.15700 1.20316 0.91840 0.84674 0.99383 1.20641 0.99260 0.95845 0.93529 1.21096 0.99076 0.96251 0.96525 1.21315 0.97209 0.96044 0.98773 1.21252 1.00584 1.00571 0.91918 1.21209 0.98695 0.96013 0.99138 1.20948 0.99010 0.96543 0.97580 0.91957 0.92024 0.93827 0.93919 0.91224 0.91510 0.94843 0.92980 0.91827 0.91213 0.95251 0.94414 0.90764 0.93127 0.92025 0.94124 0.93706 0.94946 0.91083 0.85019 0.83541 0.84128 0.86389 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.91 71.98 0.71 -2.37 16 2 C -0.11 -2.83 5.93 30.59 0.18 -2.65 16 3 C -0.11 -3.22 5.21 30.59 0.16 -3.06 16 4 C -0.10 -3.25 4.00 30.59 0.12 -3.13 16 5 C -0.12 -4.08 4.62 30.60 0.14 -3.93 16 6 C 0.18 6.16 2.14 44.99 0.10 6.26 16 7 H 0.07 2.29 7.84 -2.38 -0.02 2.27 16 8 C -0.13 -4.28 5.33 30.59 0.16 -4.11 16 9 C -0.15 -4.82 9.80 71.98 0.71 -4.11 16 10 N -0.59 -25.22 1.10 -682.35 -0.75 -25.97 16 11 C -0.21 -11.11 8.68 84.03 0.73 -10.38 16 12 H 0.05 2.76 6.86 -2.91 -0.02 2.74 16 13 C -0.03 -1.62 5.36 84.86 0.45 -1.17 16 14 N -0.96 -60.40 13.97 21.65 0.30 -60.10 16 15 Si 0.93 46.27 24.36 68.60 1.67 47.94 16 16 H -0.29 -14.57 6.71 99.48 0.67 -13.90 16 17 H -0.33 -17.30 7.11 99.48 0.71 -16.59 16 18 H -0.23 -10.49 4.81 99.48 0.48 -10.01 16 19 C 0.16 6.61 4.42 85.63 0.38 6.99 16 20 C -0.09 -3.33 3.65 -19.86 -0.07 -3.41 16 21 C -0.11 -3.18 7.61 22.27 0.17 -3.01 16 22 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 23 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 25 C -0.12 -4.94 9.42 22.27 0.21 -4.73 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 2.02 5.32 -2.39 -0.01 2.01 16 34 H 0.06 1.78 7.30 -2.38 -0.02 1.76 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.03 1.20 6.78 -2.39 -0.02 1.18 16 37 H 0.04 1.53 7.50 -2.39 -0.02 1.51 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.59 5.11 -2.39 -0.01 1.58 16 42 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.03 1.52 2.29 -2.38 -0.01 1.51 16 44 H 0.07 2.50 7.90 -2.39 -0.02 2.48 16 45 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 46 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 48 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 49 H 0.08 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -64.56 369.35 6.66 -57.90 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.61 Total: 22.86 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 4.82 Total: -42.64 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -0.45 Total: -86.07 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Total: -64.56 6.66 -57.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258446972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.183 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds