Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46940 * 2 1 4 4 C 1.53001 * 109.46940 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47376 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00275 * 265.51563 * 5 4 3 7 7 H 1.07995 * 120.00403 * 146.32497 * 6 5 4 8 8 C 1.38819 * 119.99630 * 326.31801 * 6 5 4 9 9 N 1.31618 * 119.99901 * 337.12599 * 8 6 5 10 10 Si 1.86792 * 119.99923 * 157.12421 * 8 6 5 11 11 H 1.48500 * 109.47379 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47218 * 120.00013 * 10 8 6 13 13 H 1.48501 * 109.47369 * 240.00105 * 10 8 6 14 14 C 1.46500 * 120.00045 * 85.50697 * 5 4 3 15 15 H 1.09001 * 109.47498 * 0.02562 * 14 5 4 16 16 C 1.53002 * 109.47088 * 120.00180 * 14 5 4 17 17 C 1.52996 * 109.47416 * 295.00490 * 16 14 5 18 18 C 1.52995 * 109.47671 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47364 * 240.00299 * 14 5 4 20 20 C 1.50697 * 109.47167 * 65.00451 * 19 14 5 21 21 C 1.38241 * 119.99747 * 269.72941 * 20 19 14 22 22 C 1.38239 * 120.00174 * 179.76793 * 21 20 19 23 23 C 1.38233 * 119.99545 * 0.49885 * 22 21 20 24 24 C 1.38237 * 120.00491 * 359.75168 * 23 22 21 25 25 C 1.38231 * 120.00810 * 89.99769 * 20 19 14 26 26 H 1.08999 * 109.46961 * 60.00530 * 1 2 3 27 27 H 1.09004 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47711 * 300.00151 * 1 2 3 29 29 H 1.08995 * 109.46995 * 239.99643 * 2 1 3 30 30 H 1.08998 * 109.46742 * 119.99976 * 2 1 3 31 31 H 1.08995 * 109.47568 * 59.99994 * 3 2 1 32 32 H 1.08998 * 109.47384 * 299.99583 * 3 2 1 33 33 H 1.08996 * 109.47711 * 59.99849 * 4 3 2 34 34 H 1.08999 * 109.46961 * 299.99470 * 4 3 2 35 35 H 0.96996 * 120.00195 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46694 * 55.00129 * 16 14 5 37 37 H 1.09000 * 109.47456 * 175.00030 * 16 14 5 38 38 H 1.09007 * 109.47078 * 300.00016 * 17 16 14 39 39 H 1.09000 * 109.47184 * 59.99373 * 17 16 14 40 40 H 1.08996 * 109.47469 * 179.97438 * 18 17 16 41 41 H 1.09007 * 109.46988 * 300.00200 * 18 17 16 42 42 H 1.09000 * 109.47223 * 59.99526 * 18 17 16 43 43 H 1.09003 * 109.46830 * 185.00107 * 19 14 5 44 44 H 1.08996 * 109.47223 * 305.00257 * 19 14 5 45 45 H 1.08002 * 119.99859 * 359.97438 * 21 20 19 46 46 H 1.07993 * 120.00016 * 180.22988 * 22 21 20 47 47 H 1.07999 * 119.99847 * 179.72509 * 23 22 21 48 48 H 1.07997 * 120.00552 * 179.97438 * 24 23 22 49 49 H 1.08009 * 119.99253 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.3745 3.4376 -1.1824 7 1 4.2077 4.4978 -1.3019 8 6 4.9097 2.6970 -2.2276 9 7 5.5255 1.5602 -1.9808 10 14 4.7559 3.3139 -3.9840 11 1 4.0258 4.6070 -3.9924 12 1 6.1104 3.5070 -4.5612 13 1 4.0096 2.3184 -4.7947 14 6 4.2083 3.5481 1.2645 15 1 3.9111 2.9024 2.0908 16 6 5.6697 3.9645 1.4435 17 6 6.5420 2.7157 1.5865 18 6 8.0034 3.1320 1.7648 19 6 3.3214 4.7947 1.2464 20 6 1.8735 4.3803 1.1938 21 6 1.2481 4.2069 -0.0268 22 6 -0.0788 3.8221 -0.0752 23 6 -0.7831 3.6207 1.0971 24 6 -0.1592 3.7991 2.3177 25 6 1.1690 4.1789 2.3660 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9285 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 5.8991 1.0426 -2.7111 36 1 5.9936 4.5363 0.5738 37 1 5.7654 4.5791 2.3386 38 1 6.2180 2.1439 2.4561 39 1 6.4463 2.1012 0.6914 40 1 8.6247 2.2424 1.8672 41 1 8.3271 3.7037 0.8950 42 1 8.0994 3.7468 2.6598 43 1 3.4992 5.3802 2.1485 44 1 3.5590 5.3970 0.3696 45 1 1.7971 4.3689 -0.9427 46 1 -0.5663 3.6831 -1.0287 47 1 -1.8210 3.3244 1.0594 48 1 -0.7096 3.6422 3.2336 49 1 1.6564 4.3190 3.3196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258662901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = 11.941077 kcal Electronic energy + Delta-G solvation = -25118.442515 eV Core-core repulsion = 22044.782026 eV Total energy + Delta-G solvation = -3073.660489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.06357 -36.82864 -34.62489 -33.06513 -32.44903 -30.62886 -30.32706 -29.09491 -27.11629 -25.52547 -24.20213 -22.26903 -21.98574 -21.18474 -20.11905 -20.00861 -19.38991 -16.31549 -15.99513 -15.31429 -14.63562 -14.53455 -14.41555 -14.30968 -13.60192 -13.41165 -13.31244 -12.96276 -12.87102 -12.69265 -12.35051 -12.20414 -11.99785 -11.65976 -11.32437 -11.19248 -11.10320 -10.89972 -10.79780 -10.73247 -10.58249 -10.40161 -10.31089 -10.09268 -10.06738 -9.86690 -9.74025 -9.61453 -9.36875 -9.27008 -8.43525 -8.26111 -7.97933 -6.47772 -5.70607 -3.21559 1.92901 1.99111 3.37230 3.47233 3.47947 4.36625 4.52431 5.29213 5.36962 5.38810 5.43494 5.49055 5.63002 5.63468 5.73741 5.78602 5.84479 5.89180 6.00190 6.05750 6.11739 6.20837 6.28198 6.30340 6.32267 6.38287 6.41930 6.53658 6.60531 6.60749 6.65373 6.67782 6.70595 6.74444 6.79299 6.92822 6.96964 6.99913 7.08136 7.11115 7.14456 7.32536 7.38395 7.45011 7.52332 7.60908 7.86520 7.93203 8.58027 9.28510 9.93489 10.50666 11.28577 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.007415 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.291212 B = 3775.417300 C = 4567.385497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.135 4.135 4 C 0.148 3.852 5 N -0.570 5.570 6 C -0.241 4.241 7 H 0.059 0.941 8 C 0.011 3.989 9 N -0.884 5.884 10 Si 0.885 3.115 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.291 1.291 14 C 0.180 3.820 15 H 0.046 0.954 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.143 4.143 19 C -0.096 4.096 20 C -0.050 4.050 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.129 4.129 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.012 0.988 35 H 0.251 0.749 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 2.117 7.154 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.175 4.175 4 C 0.021 3.979 5 N -0.289 5.289 6 C -0.371 4.371 7 H 0.077 0.923 8 C -0.189 4.189 9 N -0.527 5.527 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.218 1.218 14 C 0.072 3.928 15 H 0.064 0.936 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.201 4.201 19 C -0.135 4.135 20 C -0.050 4.050 21 C -0.098 4.098 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.147 4.147 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.146 0.854 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.812 2.002 7.043 10.000 hybrid contribution -0.110 0.122 -0.992 1.005 sum -6.922 2.124 6.051 9.436 Atomic orbital electron populations 1.21726 0.97132 0.99959 1.01289 1.21480 0.94576 0.99165 1.00762 1.22441 1.00220 0.93712 1.01099 1.20974 0.89344 0.86307 1.01228 1.43793 1.73449 1.11180 1.00497 1.18890 1.34952 0.93670 0.89619 0.92305 1.24957 0.97452 0.97994 0.98476 1.69979 1.36454 1.15956 1.30306 0.86515 0.77299 0.78321 0.86374 1.20342 1.22055 1.21777 1.20357 0.91426 0.91372 0.89644 0.93572 1.21881 0.96878 0.97222 0.99612 1.21422 0.93015 0.98599 1.02458 1.21718 0.97928 1.00106 1.00303 1.21148 0.91264 0.99839 1.01276 1.19811 0.95551 0.97100 0.92562 1.21166 0.93603 0.96719 0.98345 1.21039 0.95021 1.00472 0.97524 1.20890 0.99194 1.02338 0.92853 1.20895 0.95131 1.01642 0.97155 1.20945 0.94377 1.01723 0.97668 0.93305 0.94134 0.93263 0.92823 0.93353 0.93100 0.92493 0.88589 0.96916 0.93922 0.91523 0.94824 0.94496 0.88646 0.93972 0.93131 0.94365 0.92813 0.90829 0.85389 0.87225 0.87485 0.87398 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.10 5.93 -26.73 -0.16 -2.26 16 3 C -0.14 -2.62 3.61 -26.73 -0.10 -2.71 16 4 C 0.15 3.27 5.20 -4.04 -0.02 3.25 16 5 N -0.57 -12.45 1.24 -165.66 -0.21 -12.66 16 6 C -0.24 -5.86 7.50 -15.06 -0.11 -5.97 16 7 H 0.06 1.46 6.74 -52.49 -0.35 1.10 16 8 C 0.01 0.28 4.91 -17.43 -0.09 0.19 16 9 N -0.88 -23.73 11.35 55.49 0.63 -23.10 16 10 Si 0.88 20.80 29.61 -169.99 -5.03 15.77 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.18 3.47 2.13 -67.93 -0.14 3.32 16 15 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 16 C -0.12 -2.20 4.62 -26.73 -0.12 -2.32 16 17 C -0.12 -2.26 5.82 -26.74 -0.16 -2.42 16 18 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 19 C -0.10 -1.68 4.75 -27.88 -0.13 -1.81 16 20 C -0.05 -0.85 3.64 -104.63 -0.38 -1.23 16 21 C -0.08 -1.41 6.27 -39.58 -0.25 -1.65 16 22 C -0.12 -1.92 9.07 -39.58 -0.36 -2.27 16 23 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 24 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.13 -1.99 9.35 -39.59 -0.37 -2.36 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.98 5.58 -51.93 -0.29 0.69 16 32 H 0.06 1.19 6.67 -51.93 -0.35 0.84 16 33 H 0.10 2.45 5.33 -51.93 -0.28 2.17 16 34 H 0.01 0.28 8.02 -51.93 -0.42 -0.14 16 35 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.07 1.39 7.50 -51.93 -0.39 1.00 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 39 H 0.09 2.24 7.75 -51.93 -0.40 1.84 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 44 H 0.07 1.38 6.72 -51.93 -0.35 1.03 16 45 H 0.13 2.50 7.39 -52.49 -0.39 2.11 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 48 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -25.03 375.84 -10.49 -35.51 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -9.09 Total: 5.45 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -2.45 Total: -26.64 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.42 Total: -35.76 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -25.03 -10.49 -35.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258662901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.456 kcal (2) G-P(sol) polarization free energy of solvation -25.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds