Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46940 * 2 1 4 4 C 1.53001 * 109.46940 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47376 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00275 * 265.51563 * 5 4 3 7 7 H 1.07995 * 120.00403 * 146.32497 * 6 5 4 8 8 C 1.38819 * 119.99630 * 326.31801 * 6 5 4 9 9 N 1.31618 * 119.99901 * 337.12599 * 8 6 5 10 10 Si 1.86792 * 119.99923 * 157.12421 * 8 6 5 11 11 H 1.48500 * 109.47379 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47218 * 120.00013 * 10 8 6 13 13 H 1.48501 * 109.47369 * 240.00105 * 10 8 6 14 14 C 1.46500 * 120.00045 * 85.50697 * 5 4 3 15 15 H 1.09001 * 109.47498 * 0.02562 * 14 5 4 16 16 C 1.53002 * 109.47088 * 120.00180 * 14 5 4 17 17 C 1.52996 * 109.47416 * 295.00490 * 16 14 5 18 18 C 1.52995 * 109.47671 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47364 * 240.00299 * 14 5 4 20 20 C 1.50697 * 109.47167 * 65.00451 * 19 14 5 21 21 C 1.38241 * 119.99747 * 269.72941 * 20 19 14 22 22 C 1.38239 * 120.00174 * 179.76793 * 21 20 19 23 23 C 1.38233 * 119.99545 * 0.49885 * 22 21 20 24 24 C 1.38237 * 120.00491 * 359.75168 * 23 22 21 25 25 C 1.38231 * 120.00810 * 89.99769 * 20 19 14 26 26 H 1.08999 * 109.46961 * 60.00530 * 1 2 3 27 27 H 1.09004 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47711 * 300.00151 * 1 2 3 29 29 H 1.08995 * 109.46995 * 239.99643 * 2 1 3 30 30 H 1.08998 * 109.46742 * 119.99976 * 2 1 3 31 31 H 1.08995 * 109.47568 * 59.99994 * 3 2 1 32 32 H 1.08998 * 109.47384 * 299.99583 * 3 2 1 33 33 H 1.08996 * 109.47711 * 59.99849 * 4 3 2 34 34 H 1.08999 * 109.46961 * 299.99470 * 4 3 2 35 35 H 0.96996 * 120.00195 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46694 * 55.00129 * 16 14 5 37 37 H 1.09000 * 109.47456 * 175.00030 * 16 14 5 38 38 H 1.09007 * 109.47078 * 300.00016 * 17 16 14 39 39 H 1.09000 * 109.47184 * 59.99373 * 17 16 14 40 40 H 1.08996 * 109.47469 * 179.97438 * 18 17 16 41 41 H 1.09007 * 109.46988 * 300.00200 * 18 17 16 42 42 H 1.09000 * 109.47223 * 59.99526 * 18 17 16 43 43 H 1.09003 * 109.46830 * 185.00107 * 19 14 5 44 44 H 1.08996 * 109.47223 * 305.00257 * 19 14 5 45 45 H 1.08002 * 119.99859 * 359.97438 * 21 20 19 46 46 H 1.07993 * 120.00016 * 180.22988 * 22 21 20 47 47 H 1.07999 * 119.99847 * 179.72509 * 23 22 21 48 48 H 1.07997 * 120.00552 * 179.97438 * 24 23 22 49 49 H 1.08009 * 119.99253 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.3745 3.4376 -1.1824 7 1 4.2077 4.4978 -1.3019 8 6 4.9097 2.6970 -2.2276 9 7 5.5255 1.5602 -1.9808 10 14 4.7559 3.3139 -3.9840 11 1 4.0258 4.6070 -3.9924 12 1 6.1104 3.5070 -4.5612 13 1 4.0096 2.3184 -4.7947 14 6 4.2083 3.5481 1.2645 15 1 3.9111 2.9024 2.0908 16 6 5.6697 3.9645 1.4435 17 6 6.5420 2.7157 1.5865 18 6 8.0034 3.1320 1.7648 19 6 3.3214 4.7947 1.2464 20 6 1.8735 4.3803 1.1938 21 6 1.2481 4.2069 -0.0268 22 6 -0.0788 3.8221 -0.0752 23 6 -0.7831 3.6207 1.0971 24 6 -0.1592 3.7991 2.3177 25 6 1.1690 4.1789 2.3660 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9285 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 5.8991 1.0426 -2.7111 36 1 5.9936 4.5363 0.5738 37 1 5.7654 4.5791 2.3386 38 1 6.2180 2.1439 2.4561 39 1 6.4463 2.1012 0.6914 40 1 8.6247 2.2424 1.8672 41 1 8.3271 3.7037 0.8950 42 1 8.0994 3.7468 2.6598 43 1 3.4992 5.3802 2.1485 44 1 3.5590 5.3970 0.3696 45 1 1.7971 4.3689 -0.9427 46 1 -0.5663 3.6831 -1.0287 47 1 -1.8210 3.3244 1.0594 48 1 -0.7096 3.6422 3.2336 49 1 1.6564 4.3190 3.3196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258662901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = 4.761729 kcal Electronic energy + Delta-G solvation = -25118.753835 eV Core-core repulsion = 22044.782026 eV Total energy + Delta-G solvation = -3073.971809 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38291 -38.38754 -36.14403 -34.71357 -33.94380 -32.28575 -31.53606 -30.52940 -28.78215 -26.89492 -25.97451 -23.76707 -23.20067 -22.63022 -21.58079 -21.49149 -21.09668 -17.99815 -17.36977 -16.99589 -16.26112 -16.06639 -15.79280 -15.65438 -15.20990 -14.95497 -14.89154 -14.40320 -14.12142 -14.05348 -13.69467 -13.59470 -13.50271 -13.14631 -12.87389 -12.81503 -12.74840 -12.56698 -12.41106 -12.23760 -12.04989 -11.96989 -11.70013 -11.60762 -11.56105 -11.50710 -11.23039 -11.19981 -11.05600 -10.99216 -10.33201 -9.51230 -9.25712 -8.35685 -7.65267 -5.17581 0.72507 0.78157 1.43300 1.49882 1.55185 2.58477 3.14430 3.39294 3.71861 4.07190 4.21036 4.26867 4.30585 4.36033 4.39733 4.42662 4.48848 4.52555 4.56723 4.68315 4.77196 4.79609 4.87507 4.88785 5.00421 5.02410 5.07481 5.10779 5.13375 5.15594 5.19505 5.24331 5.27448 5.33059 5.42231 5.45774 5.48212 5.53196 5.59769 5.72978 5.75904 5.80425 5.82174 5.87413 5.92019 6.07814 6.10604 6.39340 6.61584 7.34508 8.08281 8.59439 9.29352 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.007415 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.291212 B = 3775.417300 C = 4567.385497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.152 3.848 5 N -0.573 5.573 6 C -0.220 4.220 7 H 0.052 0.948 8 C -0.036 4.036 9 N -0.909 5.909 10 Si 0.929 3.071 11 H -0.273 1.273 12 H -0.301 1.301 13 H -0.299 1.299 14 C 0.179 3.821 15 H 0.048 0.952 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.137 4.137 19 C -0.087 4.087 20 C -0.066 4.066 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.132 4.132 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.005 0.995 35 H 0.242 0.758 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.135 0.865 48 H 0.139 0.861 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 2.597 9.629 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.153 4.153 4 C 0.026 3.974 5 N -0.293 5.293 6 C -0.351 4.351 7 H 0.070 0.930 8 C -0.233 4.233 9 N -0.555 5.555 10 Si 0.761 3.239 11 H -0.197 1.197 12 H -0.229 1.229 13 H -0.226 1.226 14 C 0.072 3.928 15 H 0.066 0.934 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.194 4.194 19 C -0.126 4.126 20 C -0.066 4.066 21 C -0.117 4.117 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.150 4.150 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.134 0.866 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.773 2.506 9.529 13.193 hybrid contribution 0.445 -0.005 -1.673 1.731 sum -8.328 2.501 7.856 11.718 Atomic orbital electron populations 1.21638 0.94689 1.01396 1.01513 1.21469 0.96710 0.97356 1.00434 1.22153 0.97715 0.95091 1.00320 1.20825 0.91272 0.86154 0.99167 1.43827 1.73463 1.11016 1.00950 1.18925 1.32498 0.93233 0.90435 0.93005 1.25401 0.98536 0.98634 1.00679 1.70105 1.38247 1.17018 1.30162 0.85786 0.76528 0.77812 0.83805 1.19722 1.22887 1.22635 1.20486 0.92237 0.91902 0.88158 0.93357 1.21827 0.96295 0.97060 0.99827 1.21305 0.95032 0.98172 1.00513 1.21649 0.96088 1.00696 1.00968 1.21002 0.91568 0.98606 1.01454 1.19793 0.95296 0.98398 0.93161 1.20976 0.94567 0.98672 0.97438 1.21160 0.94357 1.00404 0.98773 1.21204 1.00343 1.01020 0.92196 1.21268 0.94729 1.00054 0.98348 1.21169 0.95028 1.01222 0.97576 0.93516 0.92147 0.92512 0.94146 0.92765 0.92551 0.94338 0.91924 0.97657 0.94826 0.94092 0.91715 0.93514 0.93418 0.93266 0.94359 0.91677 0.90348 0.92946 0.88607 0.86586 0.84756 0.84351 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.91 71.98 0.71 -2.97 16 2 C -0.12 -4.10 5.93 30.59 0.18 -3.91 16 3 C -0.11 -4.39 3.61 30.59 0.11 -4.28 16 4 C 0.15 6.94 5.20 86.38 0.45 7.39 16 5 N -0.57 -25.73 1.24 -678.03 -0.84 -26.57 16 6 C -0.22 -11.08 7.50 84.04 0.63 -10.45 16 7 H 0.05 2.68 6.74 -2.91 -0.02 2.66 16 8 C -0.04 -1.92 4.91 84.86 0.42 -1.51 16 9 N -0.91 -51.31 11.35 21.65 0.25 -51.06 16 10 Si 0.93 44.48 29.61 68.60 2.03 46.51 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 14 C 0.18 6.85 2.13 44.99 0.10 6.94 16 15 H 0.05 1.83 7.85 -2.39 -0.02 1.81 16 16 C -0.11 -4.12 4.62 30.59 0.14 -3.98 16 17 C -0.11 -4.33 5.82 30.59 0.18 -4.15 16 18 C -0.14 -4.46 9.91 71.98 0.71 -3.75 16 19 C -0.09 -2.98 4.75 29.85 0.14 -2.83 16 20 C -0.07 -2.18 3.64 -19.87 -0.07 -2.25 16 21 C -0.10 -3.43 6.27 22.27 0.14 -3.29 16 22 C -0.13 -3.84 9.07 22.27 0.20 -3.64 16 23 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 24 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 25 C -0.13 -3.66 9.35 22.27 0.21 -3.45 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.12 5.58 -2.39 -0.01 2.10 16 32 H 0.04 1.63 6.67 -2.39 -0.02 1.61 16 33 H 0.06 3.35 5.33 -2.39 -0.01 3.34 16 34 H 0.01 0.23 8.02 -2.39 -0.02 0.21 16 35 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16 36 H 0.04 1.72 7.50 -2.38 -0.02 1.71 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.05 2.31 7.75 -2.39 -0.02 2.29 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 44 H 0.05 1.99 6.72 -2.39 -0.02 1.98 16 45 H 0.10 3.91 7.39 -2.91 -0.02 3.88 16 46 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 47 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 48 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 49 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -56.37 375.84 7.00 -49.37 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.87 Total: 23.78 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.70 Total: -42.02 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -0.59 Total: -77.63 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -56.37 7.00 -49.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258662901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.130 kcal (2) G-P(sol) polarization free energy of solvation -56.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds