Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 C 1.52991 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47085 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99943 * 95.30624 * 5 4 3 7 7 H 1.08000 * 119.99706 * 218.08622 * 6 5 4 8 8 C 1.38808 * 120.00505 * 38.08007 * 6 5 4 9 9 N 1.31623 * 119.99575 * 20.40717 * 8 6 5 10 10 Si 1.86798 * 120.00528 * 200.40975 * 8 6 5 11 11 H 1.48502 * 109.46685 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47612 * 119.99930 * 10 8 6 13 13 H 1.48502 * 109.47026 * 240.00314 * 10 8 6 14 14 C 1.46499 * 119.99857 * 275.29958 * 5 4 3 15 15 H 1.08996 * 109.47124 * 0.02562 * 14 5 4 16 16 C 1.52998 * 109.47329 * 239.99897 * 14 5 4 17 17 C 1.52999 * 109.46919 * 65.00260 * 16 14 5 18 18 C 1.53001 * 109.47225 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46873 * 119.99856 * 14 5 4 20 20 C 1.50691 * 109.47279 * 295.00097 * 19 14 5 21 21 C 1.38234 * 120.00233 * 269.72659 * 20 19 14 22 22 C 1.38238 * 120.00071 * 179.76832 * 21 20 19 23 23 C 1.38237 * 120.00063 * 0.50258 * 22 21 20 24 24 C 1.38236 * 119.99671 * 359.75235 * 23 22 21 25 25 C 1.38232 * 120.00375 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47408 * 300.00602 * 1 2 3 27 27 H 1.09009 * 109.46870 * 60.00239 * 1 2 3 28 28 H 1.08995 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47408 * 239.99398 * 2 1 3 30 30 H 1.08997 * 109.46557 * 119.99930 * 2 1 3 31 31 H 1.08998 * 109.47098 * 59.99788 * 3 2 1 32 32 H 1.09000 * 109.46919 * 299.99736 * 3 2 1 33 33 H 1.09000 * 109.47436 * 299.99879 * 4 3 2 34 34 H 1.09007 * 109.47563 * 60.00134 * 4 3 2 35 35 H 0.97006 * 119.99486 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47103 * 185.00160 * 16 14 5 37 37 H 1.08996 * 109.47314 * 305.00378 * 16 14 5 38 38 H 1.08999 * 109.47151 * 299.99871 * 17 16 14 39 39 H 1.09003 * 109.47388 * 60.00087 * 17 16 14 40 40 H 1.09002 * 109.47502 * 179.97438 * 18 17 16 41 41 H 1.09000 * 109.47610 * 300.00253 * 18 17 16 42 42 H 1.09003 * 109.46706 * 59.99866 * 18 17 16 43 43 H 1.09000 * 109.46652 * 55.00199 * 19 14 5 44 44 H 1.09003 * 109.46858 * 174.99647 * 19 14 5 45 45 H 1.08002 * 119.99786 * 359.97438 * 21 20 19 46 46 H 1.08001 * 120.00153 * 180.22768 * 22 21 20 47 47 H 1.08001 * 120.00176 * 179.72557 * 23 22 21 48 48 H 1.08003 * 119.99679 * 179.97438 * 24 23 22 49 49 H 1.08005 * 120.00170 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3895 3.4334 1.1806 7 1 4.1590 4.4775 1.3324 8 6 5.0212 2.7094 2.1824 9 7 5.6570 1.5952 1.8880 10 14 4.9690 3.3164 3.9483 11 1 4.1973 4.5834 4.0135 12 1 4.3158 2.2937 4.8042 13 1 6.3531 3.5550 4.4308 14 6 4.1925 3.5526 -1.2637 15 1 3.8842 2.9100 -2.0883 16 6 5.6515 3.9697 -1.4594 17 6 6.5219 2.7214 -1.6178 18 6 7.9808 3.1384 -1.8143 19 6 3.3059 4.7991 -1.2301 20 6 1.8588 4.3845 -1.1607 21 6 1.1382 4.1927 -2.3247 22 6 -0.1880 3.8076 -2.2611 23 6 -0.7965 3.6245 -1.0334 24 6 -0.0773 3.8214 0.1306 25 6 1.2504 4.2009 0.0670 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9338 0.9285 -0.8892 35 1 6.0982 1.0891 2.5881 36 1 5.7360 4.5874 -2.3536 37 1 5.9864 4.5384 -0.5920 38 1 6.4374 2.1037 -0.7237 39 1 6.1870 2.1526 -2.4853 40 1 8.6010 2.2491 -1.9266 41 1 8.0650 3.7559 -2.7085 42 1 8.3159 3.7074 -0.9470 43 1 3.5546 5.3983 -0.3542 44 1 3.4724 5.3878 -2.1322 45 1 1.6122 4.3404 -3.2838 46 1 -0.7500 3.6542 -3.1705 47 1 -1.8338 3.3280 -0.9837 48 1 -0.5528 3.6787 1.0898 49 1 1.8122 4.3552 0.9765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258662902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = 10.729750 kcal Electronic energy + Delta-G solvation = -25114.212780 eV Core-core repulsion = 22040.499764 eV Total energy + Delta-G solvation = -3073.713016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.06209 -36.80946 -34.61627 -33.04001 -32.44148 -30.64065 -30.32724 -29.09713 -27.10562 -25.50986 -24.18884 -22.26727 -21.98418 -21.18124 -20.10480 -20.01532 -19.38176 -16.30183 -15.99175 -15.28950 -14.63581 -14.53642 -14.43694 -14.29869 -13.59519 -13.39879 -13.30805 -12.95793 -12.87078 -12.67922 -12.34086 -12.19848 -12.00628 -11.65814 -11.31720 -11.17419 -11.10083 -10.90656 -10.80192 -10.73491 -10.57205 -10.40050 -10.31242 -10.08871 -10.06227 -9.87124 -9.71936 -9.59390 -9.36117 -9.26749 -8.43593 -8.26282 -7.97812 -6.42040 -5.70964 -3.26881 1.92954 1.99206 3.36501 3.46422 3.47219 4.36757 4.51632 5.30074 5.37318 5.38907 5.43996 5.49138 5.62500 5.63770 5.73862 5.80354 5.83764 5.91747 6.01565 6.07258 6.12013 6.22114 6.28471 6.30392 6.33418 6.37511 6.43308 6.54452 6.60687 6.61707 6.65895 6.68959 6.72535 6.74650 6.79737 6.94174 6.98353 7.00441 7.07786 7.09962 7.14490 7.34482 7.39722 7.44361 7.57274 7.61050 7.85356 7.90741 8.60614 9.29557 9.92139 10.52600 11.28292 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.007290 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.908813 B = 3839.771402 C = 4589.793335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.136 4.136 4 C 0.154 3.846 5 N -0.570 5.570 6 C -0.245 4.245 7 H 0.057 0.943 8 C 0.016 3.984 9 N -0.883 5.883 10 Si 0.885 3.115 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.293 1.293 14 C 0.181 3.819 15 H 0.045 0.955 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.143 4.143 19 C -0.096 4.096 20 C -0.050 4.050 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.080 4.080 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.013 0.987 35 H 0.251 0.749 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.035 0.965 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 2.032 -6.866 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.176 4.176 4 C 0.028 3.972 5 N -0.289 5.289 6 C -0.375 4.375 7 H 0.074 0.926 8 C -0.184 4.184 9 N -0.526 5.526 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.220 1.220 14 C 0.073 3.927 15 H 0.063 0.937 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.200 4.200 19 C -0.135 4.135 20 C -0.050 4.050 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.098 4.098 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.082 1.914 -6.762 9.977 hybrid contribution -0.030 0.114 0.999 1.006 sum -7.112 2.027 -5.763 9.376 Atomic orbital electron populations 1.21725 0.97112 0.99963 1.01302 1.21486 0.94602 0.99154 1.00766 1.22471 1.00227 0.93737 1.01161 1.20861 0.89208 0.86382 1.00757 1.43728 1.73482 1.11040 1.00660 1.18845 1.31797 0.95605 0.91300 0.92558 1.25091 0.96536 0.98126 0.98671 1.69985 1.33901 1.17348 1.31335 0.86514 0.77229 0.78331 0.86390 1.20293 1.21758 1.21975 1.20355 0.91451 0.91288 0.89633 0.93661 1.21860 0.96903 0.97204 0.99513 1.21448 0.92960 0.98682 1.02550 1.21714 0.98014 1.00053 1.00226 1.21149 0.91242 0.99871 1.01275 1.19820 0.95556 0.97069 0.92575 1.20948 0.94323 1.01714 0.97732 1.20897 0.95221 1.01611 0.97093 1.20889 0.99185 1.02344 0.92857 1.21038 0.94929 1.00537 0.97586 1.21165 0.93686 0.96714 0.98279 0.93289 0.93264 0.94131 0.93331 0.92843 0.92434 0.93047 0.89345 0.96846 0.93906 0.94934 0.91505 0.88279 0.94617 0.94021 0.94428 0.93166 0.90819 0.92840 0.87215 0.87405 0.87489 0.87231 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.08 5.93 -26.73 -0.16 -2.24 16 3 C -0.14 -2.62 3.59 -26.73 -0.10 -2.72 16 4 C 0.15 3.40 5.17 -4.04 -0.02 3.38 16 5 N -0.57 -12.44 1.19 -165.66 -0.20 -12.64 16 6 C -0.25 -5.95 7.43 -15.06 -0.11 -6.06 16 7 H 0.06 1.40 6.70 -52.49 -0.35 1.05 16 8 C 0.02 0.41 4.92 -17.43 -0.09 0.32 16 9 N -0.88 -23.64 11.53 55.49 0.64 -23.00 16 10 Si 0.89 20.74 29.60 -169.99 -5.03 15.71 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 C 0.18 3.50 2.13 -67.93 -0.14 3.35 16 15 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 16 C -0.12 -2.20 4.62 -26.73 -0.12 -2.32 16 17 C -0.12 -2.32 5.82 -26.73 -0.16 -2.47 16 18 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 19 C -0.10 -1.69 4.75 -27.89 -0.13 -1.82 16 20 C -0.05 -0.85 3.62 -104.63 -0.38 -1.23 16 21 C -0.13 -1.99 9.33 -39.58 -0.37 -2.36 16 22 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 23 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 24 C -0.12 -1.91 9.09 -39.58 -0.36 -2.27 16 25 C -0.08 -1.40 6.22 -39.58 -0.25 -1.65 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.19 6.58 -51.93 -0.34 0.84 16 32 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 33 H 0.09 2.24 5.60 -51.93 -0.29 1.95 16 34 H 0.01 0.30 8.03 -51.93 -0.42 -0.12 16 35 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.41 7.50 -51.93 -0.39 1.02 16 38 H 0.10 2.34 7.75 -51.93 -0.40 1.94 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.39 6.74 -51.93 -0.35 1.04 16 44 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 47 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 49 H 0.13 2.49 7.32 -52.48 -0.38 2.10 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -24.94 375.95 -10.47 -35.41 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -9.10 Total: 5.33 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -2.44 Total: -26.48 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.44 Total: -35.64 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -24.94 -10.47 -35.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258662902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.136 kcal (2) G-P(sol) polarization free energy of solvation -24.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds