Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 C 1.52991 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47085 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99943 * 95.30624 * 5 4 3 7 7 H 1.08000 * 119.99706 * 218.08622 * 6 5 4 8 8 C 1.38808 * 120.00505 * 38.08007 * 6 5 4 9 9 N 1.31623 * 119.99575 * 20.40717 * 8 6 5 10 10 Si 1.86798 * 120.00528 * 200.40975 * 8 6 5 11 11 H 1.48502 * 109.46685 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47612 * 119.99930 * 10 8 6 13 13 H 1.48502 * 109.47026 * 240.00314 * 10 8 6 14 14 C 1.46499 * 119.99857 * 275.29958 * 5 4 3 15 15 H 1.08996 * 109.47124 * 0.02562 * 14 5 4 16 16 C 1.52998 * 109.47329 * 239.99897 * 14 5 4 17 17 C 1.52999 * 109.46919 * 65.00260 * 16 14 5 18 18 C 1.53001 * 109.47225 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46873 * 119.99856 * 14 5 4 20 20 C 1.50691 * 109.47279 * 295.00097 * 19 14 5 21 21 C 1.38234 * 120.00233 * 269.72659 * 20 19 14 22 22 C 1.38238 * 120.00071 * 179.76832 * 21 20 19 23 23 C 1.38237 * 120.00063 * 0.50258 * 22 21 20 24 24 C 1.38236 * 119.99671 * 359.75235 * 23 22 21 25 25 C 1.38232 * 120.00375 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47408 * 300.00602 * 1 2 3 27 27 H 1.09009 * 109.46870 * 60.00239 * 1 2 3 28 28 H 1.08995 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47408 * 239.99398 * 2 1 3 30 30 H 1.08997 * 109.46557 * 119.99930 * 2 1 3 31 31 H 1.08998 * 109.47098 * 59.99788 * 3 2 1 32 32 H 1.09000 * 109.46919 * 299.99736 * 3 2 1 33 33 H 1.09000 * 109.47436 * 299.99879 * 4 3 2 34 34 H 1.09007 * 109.47563 * 60.00134 * 4 3 2 35 35 H 0.97006 * 119.99486 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47103 * 185.00160 * 16 14 5 37 37 H 1.08996 * 109.47314 * 305.00378 * 16 14 5 38 38 H 1.08999 * 109.47151 * 299.99871 * 17 16 14 39 39 H 1.09003 * 109.47388 * 60.00087 * 17 16 14 40 40 H 1.09002 * 109.47502 * 179.97438 * 18 17 16 41 41 H 1.09000 * 109.47610 * 300.00253 * 18 17 16 42 42 H 1.09003 * 109.46706 * 59.99866 * 18 17 16 43 43 H 1.09000 * 109.46652 * 55.00199 * 19 14 5 44 44 H 1.09003 * 109.46858 * 174.99647 * 19 14 5 45 45 H 1.08002 * 119.99786 * 359.97438 * 21 20 19 46 46 H 1.08001 * 120.00153 * 180.22768 * 22 21 20 47 47 H 1.08001 * 120.00176 * 179.72557 * 23 22 21 48 48 H 1.08003 * 119.99679 * 179.97438 * 24 23 22 49 49 H 1.08005 * 120.00170 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3895 3.4334 1.1806 7 1 4.1590 4.4775 1.3324 8 6 5.0212 2.7094 2.1824 9 7 5.6570 1.5952 1.8880 10 14 4.9690 3.3164 3.9483 11 1 4.1973 4.5834 4.0135 12 1 4.3158 2.2937 4.8042 13 1 6.3531 3.5550 4.4308 14 6 4.1925 3.5526 -1.2637 15 1 3.8842 2.9100 -2.0883 16 6 5.6515 3.9697 -1.4594 17 6 6.5219 2.7214 -1.6178 18 6 7.9808 3.1384 -1.8143 19 6 3.3059 4.7991 -1.2301 20 6 1.8588 4.3845 -1.1607 21 6 1.1382 4.1927 -2.3247 22 6 -0.1880 3.8076 -2.2611 23 6 -0.7965 3.6245 -1.0334 24 6 -0.0773 3.8214 0.1306 25 6 1.2504 4.2009 0.0670 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9338 0.9285 -0.8892 35 1 6.0982 1.0891 2.5881 36 1 5.7360 4.5874 -2.3536 37 1 5.9864 4.5384 -0.5920 38 1 6.4374 2.1037 -0.7237 39 1 6.1870 2.1526 -2.4853 40 1 8.6010 2.2491 -1.9266 41 1 8.0650 3.7559 -2.7085 42 1 8.3159 3.7074 -0.9470 43 1 3.5546 5.3983 -0.3542 44 1 3.4724 5.3878 -2.1322 45 1 1.6122 4.3404 -3.2838 46 1 -0.7500 3.6542 -3.1705 47 1 -1.8338 3.3280 -0.9837 48 1 -0.5528 3.6787 1.0898 49 1 1.8122 4.3552 0.9765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258662902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = 3.661375 kcal Electronic energy + Delta-G solvation = -25114.519287 eV Core-core repulsion = 22040.499764 eV Total energy + Delta-G solvation = -3074.019524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.37909 -38.36958 -36.12833 -34.69565 -33.94072 -32.29541 -31.53375 -30.52919 -28.76800 -26.88754 -25.95867 -23.76642 -23.19696 -22.62434 -21.57944 -21.48467 -21.09167 -17.97691 -17.36975 -16.96840 -16.27989 -16.06857 -15.78707 -15.64664 -15.20671 -14.94059 -14.88594 -14.39468 -14.11472 -14.04912 -13.69404 -13.59087 -13.50306 -13.12757 -12.87962 -12.82408 -12.75203 -12.55314 -12.41738 -12.23120 -12.04462 -11.96806 -11.69169 -11.60429 -11.55328 -11.50460 -11.21803 -11.19139 -11.03953 -10.97960 -10.34833 -9.50698 -9.25222 -8.29986 -7.64817 -5.22733 0.72823 0.78531 1.43260 1.49711 1.55134 2.57881 3.14828 3.40369 3.72700 4.08128 4.21390 4.27040 4.31257 4.36586 4.40504 4.43707 4.49262 4.52770 4.57907 4.68948 4.77333 4.80002 4.88010 4.89250 5.01101 5.03118 5.07592 5.11359 5.14092 5.16573 5.19856 5.24771 5.27647 5.33901 5.42616 5.44697 5.49228 5.53356 5.60212 5.73694 5.76951 5.81044 5.82316 5.87864 5.95674 6.04653 6.10910 6.39675 6.63904 7.36188 8.07384 8.61668 9.29315 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.007290 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.908813 B = 3839.771402 C = 4589.793335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.159 3.841 5 N -0.573 5.573 6 C -0.225 4.225 7 H 0.049 0.951 8 C -0.030 4.030 9 N -0.908 5.908 10 Si 0.930 3.070 11 H -0.272 1.272 12 H -0.298 1.298 13 H -0.300 1.300 14 C 0.180 3.820 15 H 0.047 0.953 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.136 4.136 19 C -0.087 4.087 20 C -0.066 4.066 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.098 4.098 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.242 0.758 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.117 0.883 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 2.476 -9.224 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.154 4.154 4 C 0.033 3.967 5 N -0.293 5.293 6 C -0.356 4.356 7 H 0.067 0.933 8 C -0.227 4.227 9 N -0.553 5.553 10 Si 0.761 3.239 11 H -0.197 1.197 12 H -0.226 1.226 13 H -0.228 1.228 14 C 0.073 3.927 15 H 0.065 0.935 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.193 4.193 19 C -0.126 4.126 20 C -0.067 4.067 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.156 0.844 47 H 0.153 0.847 48 H 0.135 0.865 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.118 2.380 -9.129 13.120 hybrid contribution 0.546 -0.005 1.651 1.739 sum -8.573 2.376 -7.478 11.621 Atomic orbital electron populations 1.21637 0.94672 1.01391 1.01532 1.21475 0.96729 0.97335 1.00454 1.22183 0.97656 0.95138 1.00429 1.20707 0.91179 0.86170 0.98616 1.43757 1.73548 1.10883 1.01085 1.18872 1.29574 0.95092 0.92087 0.93315 1.25542 0.97446 0.98781 1.00943 1.70111 1.35484 1.18427 1.31288 0.85782 0.76511 0.77800 0.83764 1.19701 1.22574 1.22765 1.20471 0.92201 0.91819 0.88183 0.93467 1.21805 0.96390 0.97033 0.99664 1.21334 0.94948 0.98277 1.00687 1.21642 0.96206 1.00630 1.00852 1.20999 0.91591 0.98636 1.01404 1.19794 0.95281 0.98398 0.93183 1.21168 0.94954 1.01245 0.97646 1.21268 0.94825 1.00035 0.98278 1.21204 1.00321 1.01011 0.92211 1.21162 0.94251 1.00431 0.98840 1.20974 0.94624 0.98647 0.97379 0.93447 0.92552 0.92163 0.92798 0.94085 0.94148 0.92541 0.92767 0.97668 0.94804 0.91894 0.94140 0.92891 0.93663 0.93324 0.91755 0.94446 0.92968 0.90441 0.85464 0.84376 0.84747 0.86535 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -4.06 5.93 30.60 0.18 -3.88 16 3 C -0.11 -4.40 3.59 30.59 0.11 -4.29 16 4 C 0.16 7.26 5.17 86.38 0.45 7.71 16 5 N -0.57 -25.73 1.19 -678.04 -0.81 -26.54 16 6 C -0.23 -11.34 7.43 84.03 0.62 -10.71 16 7 H 0.05 2.52 6.70 -2.91 -0.02 2.50 16 8 C -0.03 -1.60 4.92 84.86 0.42 -1.18 16 9 N -0.91 -51.02 11.53 21.65 0.25 -50.77 16 10 Si 0.93 44.32 29.60 68.60 2.03 46.36 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 13 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 14 C 0.18 6.93 2.13 44.99 0.10 7.03 16 15 H 0.05 1.80 7.86 -2.39 -0.02 1.79 16 16 C -0.11 -4.13 4.62 30.59 0.14 -3.99 16 17 C -0.11 -4.47 5.82 30.59 0.18 -4.29 16 18 C -0.14 -4.51 9.91 71.98 0.71 -3.80 16 19 C -0.09 -2.99 4.75 29.85 0.14 -2.85 16 20 C -0.07 -2.18 3.62 -19.87 -0.07 -2.25 16 21 C -0.13 -3.67 9.33 22.27 0.21 -3.46 16 22 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 24 C -0.13 -3.81 9.09 22.27 0.20 -3.61 16 25 C -0.10 -3.40 6.22 22.27 0.14 -3.27 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.69 6.58 -2.39 -0.02 1.67 16 32 H 0.06 2.11 5.63 -2.39 -0.01 2.09 16 33 H 0.05 2.89 5.60 -2.39 -0.01 2.87 16 34 H 0.00 0.23 8.03 -2.38 -0.02 0.21 16 35 H 0.24 13.54 8.31 -92.70 -0.77 12.77 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.73 7.50 -2.39 -0.02 1.71 16 38 H 0.05 2.58 7.75 -2.39 -0.02 2.56 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 2.00 6.74 -2.39 -0.02 1.98 16 44 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 45 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 48 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 49 H 0.10 3.90 7.32 -2.91 -0.02 3.88 16 Total: -1.00 -56.08 375.95 7.03 -49.05 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.87 Total: 23.56 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 4.69 Total: -41.65 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -0.56 Total: -77.31 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.36 kcal Total: -56.08 7.03 -49.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258662902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.714 kcal (2) G-P(sol) polarization free energy of solvation -56.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds