Wall clock time and date at job start Tue Mar 31 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47366 * 2 1 4 4 C 1.52998 * 109.47366 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47401 * 177.15920 * 4 3 2 6 6 H 1.09001 * 109.46947 * 56.35628 * 5 4 3 7 7 C 1.53002 * 109.47505 * 176.35594 * 5 4 3 8 8 C 1.50696 * 109.47549 * 185.00470 * 7 5 4 9 9 C 1.38234 * 119.99810 * 269.73258 * 8 7 5 10 10 C 1.38230 * 119.99958 * 179.76696 * 9 8 7 11 11 C 1.38239 * 120.00093 * 0.49839 * 10 9 8 12 12 C 1.38236 * 119.99649 * 359.74863 * 11 10 9 13 13 C 1.38232 * 120.00264 * 0.02562 * 12 11 10 14 14 N 1.46901 * 109.47324 * 296.35806 * 5 4 3 15 15 C 1.46899 * 110.99872 * 306.01244 * 14 5 4 16 16 C 1.52998 * 109.46898 * 184.50302 * 15 14 5 17 17 C 1.53005 * 109.46887 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46857 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99522 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99735 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46774 * 60.00130 * 22 20 18 24 24 H 1.48494 * 109.47030 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47406 * 300.00654 * 22 20 18 26 26 H 1.08992 * 109.47251 * 59.99267 * 1 2 3 27 27 H 1.08997 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46723 * 299.99498 * 1 2 3 29 29 H 1.09005 * 109.46984 * 240.00026 * 2 1 3 30 30 H 1.09001 * 109.47792 * 120.00628 * 2 1 3 31 31 H 1.09007 * 109.46790 * 60.00542 * 3 2 1 32 32 H 1.09002 * 109.47579 * 300.00643 * 3 2 1 33 33 H 1.09008 * 109.47110 * 57.16397 * 4 3 2 34 34 H 1.08995 * 109.47661 * 297.16503 * 4 3 2 35 35 H 1.09000 * 109.46608 * 305.00549 * 7 5 4 36 36 H 1.08995 * 109.47089 * 64.99838 * 7 5 4 37 37 H 1.08001 * 120.00030 * 359.97438 * 9 8 7 38 38 H 1.08012 * 120.00170 * 180.22446 * 10 9 8 39 39 H 1.08000 * 119.99933 * 179.72787 * 11 10 9 40 40 H 1.08001 * 119.99608 * 179.97438 * 12 11 10 41 41 H 1.07995 * 119.99879 * 179.97438 * 13 12 11 42 42 H 1.00900 * 110.99855 * 69.97062 * 14 5 4 43 43 H 1.08999 * 109.46958 * 304.50675 * 15 14 5 44 44 H 1.09004 * 109.46830 * 64.50898 * 15 14 5 45 45 H 1.08999 * 109.47620 * 299.99967 * 16 15 14 46 46 H 1.08996 * 109.46976 * 60.00334 * 16 15 14 47 47 H 1.08999 * 109.46816 * 300.00279 * 17 16 15 48 48 H 1.08996 * 109.47187 * 60.00282 * 17 16 15 49 49 H 0.97003 * 120.00369 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8831 -0.0708 6 1 3.6641 3.4573 0.7570 7 6 5.6073 2.8887 0.0213 8 6 6.1023 4.3111 0.0747 9 6 6.4066 4.9813 -1.0954 10 6 6.8560 6.2876 -1.0467 11 6 7.0110 6.9203 0.1726 12 6 6.7115 6.2483 1.3429 13 6 6.2577 4.9435 1.2940 14 7 3.6642 3.4873 -1.3436 15 6 4.0866 2.6603 -2.4818 16 6 3.7362 3.3743 -3.7888 17 6 4.1756 2.5126 -4.9743 18 6 3.8311 3.2162 -6.2617 19 1 3.3468 4.1812 -6.2368 20 6 4.1342 2.6279 -7.4713 21 7 4.7235 1.4526 -7.5016 22 14 3.7065 3.4997 -9.0671 23 1 4.4065 4.8083 -9.1192 24 1 4.1342 2.6640 -10.2176 25 1 2.2395 3.7202 -9.1329 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.8850 -0.8626 34 1 3.9330 0.9734 0.9151 35 1 5.9187 2.3615 0.9231 36 1 6.0259 2.3909 -0.8533 37 1 6.2900 4.4855 -2.0477 38 1 7.0903 6.8126 -1.9611 39 1 7.3663 7.9395 0.2108 40 1 6.8330 6.7425 2.2955 41 1 6.0241 4.4185 2.2084 42 1 2.6676 3.6443 -1.3608 43 1 5.1634 2.4985 -2.4335 44 1 3.5727 1.6998 -2.4435 45 1 2.6594 3.5361 -3.8372 46 1 4.2501 4.3348 -3.8271 47 1 5.2524 2.3504 -4.9262 48 1 3.6615 1.5523 -4.9358 49 1 4.9364 1.0386 -8.3526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258706659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:26 Heat of formation + Delta-G solvation = -18.578394 kcal Electronic energy + Delta-G solvation = -23030.838159 eV Core-core repulsion = 19955.854246 eV Total energy + Delta-G solvation = -3074.983913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.44777 -37.93728 -35.00046 -33.92402 -32.43666 -31.27478 -30.67294 -29.59466 -27.71896 -26.01562 -24.19192 -22.91944 -22.34222 -21.61703 -20.77963 -20.24795 -19.36100 -16.60305 -16.35903 -15.94460 -15.74150 -15.07875 -14.73647 -14.50673 -14.28592 -14.14857 -13.90927 -13.57113 -13.17834 -12.98152 -12.74576 -12.63807 -12.25275 -12.13312 -11.91091 -11.73660 -11.50112 -11.26537 -11.08545 -11.07279 -10.83920 -10.82214 -10.75931 -10.57766 -10.49126 -10.42668 -10.28407 -9.62348 -9.28446 -9.03403 -8.71621 -8.47121 -8.31352 -8.00492 -5.96807 -3.98627 1.55241 1.62571 3.35389 3.39515 3.42370 3.97378 4.42122 4.51472 4.66808 4.86115 4.94182 5.00581 5.02019 5.15529 5.20706 5.28639 5.29902 5.39012 5.42805 5.49013 5.62732 5.66000 5.68143 5.74790 5.77828 5.81741 5.88800 5.90098 5.98122 6.02367 6.07409 6.12838 6.23059 6.24866 6.28491 6.33893 6.46903 6.62626 6.73264 6.77535 6.85802 6.89979 7.18893 7.22028 7.45134 7.70990 7.72774 7.87826 8.03934 8.47684 9.08495 9.65221 11.14538 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008959 B = 0.004537 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.523335 B = 6170.177599 C = 8818.890163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.158 4.158 5 C 0.095 3.905 6 H 0.075 0.925 7 C -0.077 4.077 8 C -0.061 4.061 9 C -0.086 4.086 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.128 4.128 13 C -0.126 4.126 14 N -0.678 5.678 15 C 0.054 3.946 16 C -0.105 4.105 17 C 0.023 3.977 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.337 0.663 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.043 0.957 46 H 0.054 0.946 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 2.618 20.305 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.198 4.198 5 C -0.015 4.015 6 H 0.093 0.907 7 C -0.115 4.115 8 C -0.061 4.061 9 C -0.104 4.104 10 C -0.139 4.139 11 C -0.149 4.149 12 C -0.146 4.146 13 C -0.144 4.144 14 N -0.308 5.308 15 C -0.075 4.075 16 C -0.143 4.143 17 C -0.014 4.014 18 C -0.556 4.556 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.137 2.906 20.142 20.351 hybrid contribution -0.878 -0.321 -0.917 1.310 sum -0.742 2.585 19.225 19.412 Atomic orbital electron populations 1.21773 0.96028 1.01439 1.01755 1.21509 0.95747 0.96964 1.01903 1.21593 0.95329 0.96882 1.01857 1.22378 0.95863 0.98903 1.02608 1.21507 0.94204 0.92614 0.93188 0.90655 1.20718 0.95114 0.93146 1.02503 1.19677 0.97582 0.95946 0.92909 1.21127 0.96551 0.94376 0.98373 1.21184 0.99734 0.95325 0.97620 1.21058 1.01410 0.99614 0.92830 1.20995 1.00752 0.94994 0.97876 1.20955 1.01152 0.95163 0.97133 1.60671 1.19959 1.48919 1.01264 1.22196 1.00173 0.94508 0.90581 1.21595 0.99835 0.99630 0.93249 1.19047 0.96441 0.94679 0.91249 1.21223 1.38806 1.04526 0.91087 0.92801 1.25014 0.95296 0.94950 0.99157 1.69951 1.42079 1.15748 1.25851 0.86686 0.78814 0.79607 0.83061 1.20240 1.21332 1.20294 0.92565 0.92952 0.93016 0.91885 0.92383 0.92297 0.91872 0.90964 0.91987 0.91264 0.90521 0.85619 0.86364 0.86810 0.86852 0.86859 0.84492 0.91532 0.95362 0.93864 0.92769 0.96751 0.96950 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.12 -1.24 5.03 -26.73 -0.13 -1.38 16 4 C -0.16 -1.71 4.27 -26.73 -0.11 -1.83 16 5 C 0.10 1.10 2.53 -67.71 -0.17 0.93 16 6 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 7 C -0.08 -0.91 4.75 -27.88 -0.13 -1.04 16 8 C -0.06 -0.78 4.95 -104.63 -0.52 -1.30 16 9 C -0.09 -1.22 9.32 -39.59 -0.37 -1.59 16 10 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 11 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 12 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 13 C -0.13 -1.47 9.70 -39.58 -0.38 -1.85 16 14 N -0.68 -9.32 5.65 -106.72 -0.60 -9.93 16 15 C 0.05 0.89 4.76 -3.83 -0.02 0.87 16 16 C -0.11 -2.15 5.45 -26.73 -0.15 -2.30 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.73 6.86 -51.93 -0.36 0.38 16 33 H 0.07 0.90 6.21 -51.92 -0.32 0.58 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.08 0.99 6.19 -51.93 -0.32 0.67 16 37 H 0.13 1.95 7.72 -52.49 -0.40 1.54 16 38 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.11 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.34 4.50 7.51 -39.29 -0.30 4.20 16 43 H 0.07 1.13 5.87 -51.93 -0.30 0.82 16 44 H 0.03 0.47 6.41 -51.93 -0.33 0.14 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -29.83 386.92 -11.64 -41.47 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -9.06 Total: 3.02 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -3.52 Total: -30.85 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.13 Total: -36.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.83 -11.64 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258706659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.890 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds