Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47366 * 2 1 4 4 C 1.52998 * 109.47366 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47401 * 177.15920 * 4 3 2 6 6 H 1.09001 * 109.46947 * 56.35628 * 5 4 3 7 7 C 1.53002 * 109.47505 * 176.35594 * 5 4 3 8 8 C 1.50696 * 109.47549 * 185.00470 * 7 5 4 9 9 C 1.38234 * 119.99810 * 269.73258 * 8 7 5 10 10 C 1.38230 * 119.99958 * 179.76696 * 9 8 7 11 11 C 1.38239 * 120.00093 * 0.49839 * 10 9 8 12 12 C 1.38236 * 119.99649 * 359.74863 * 11 10 9 13 13 C 1.38232 * 120.00264 * 0.02562 * 12 11 10 14 14 N 1.46901 * 109.47324 * 296.35806 * 5 4 3 15 15 C 1.46899 * 110.99872 * 306.01244 * 14 5 4 16 16 C 1.52998 * 109.46898 * 184.50302 * 15 14 5 17 17 C 1.53005 * 109.46887 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46857 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99522 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99735 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46774 * 60.00130 * 22 20 18 24 24 H 1.48494 * 109.47030 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47406 * 300.00654 * 22 20 18 26 26 H 1.08992 * 109.47251 * 59.99267 * 1 2 3 27 27 H 1.08997 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46723 * 299.99498 * 1 2 3 29 29 H 1.09005 * 109.46984 * 240.00026 * 2 1 3 30 30 H 1.09001 * 109.47792 * 120.00628 * 2 1 3 31 31 H 1.09007 * 109.46790 * 60.00542 * 3 2 1 32 32 H 1.09002 * 109.47579 * 300.00643 * 3 2 1 33 33 H 1.09008 * 109.47110 * 57.16397 * 4 3 2 34 34 H 1.08995 * 109.47661 * 297.16503 * 4 3 2 35 35 H 1.09000 * 109.46608 * 305.00549 * 7 5 4 36 36 H 1.08995 * 109.47089 * 64.99838 * 7 5 4 37 37 H 1.08001 * 120.00030 * 359.97438 * 9 8 7 38 38 H 1.08012 * 120.00170 * 180.22446 * 10 9 8 39 39 H 1.08000 * 119.99933 * 179.72787 * 11 10 9 40 40 H 1.08001 * 119.99608 * 179.97438 * 12 11 10 41 41 H 1.07995 * 119.99879 * 179.97438 * 13 12 11 42 42 H 1.00900 * 110.99855 * 69.97062 * 14 5 4 43 43 H 1.08999 * 109.46958 * 304.50675 * 15 14 5 44 44 H 1.09004 * 109.46830 * 64.50898 * 15 14 5 45 45 H 1.08999 * 109.47620 * 299.99967 * 16 15 14 46 46 H 1.08996 * 109.46976 * 60.00334 * 16 15 14 47 47 H 1.08999 * 109.46816 * 300.00279 * 17 16 15 48 48 H 1.08996 * 109.47187 * 60.00282 * 17 16 15 49 49 H 0.97003 * 120.00369 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8831 -0.0708 6 1 3.6641 3.4573 0.7570 7 6 5.6073 2.8887 0.0213 8 6 6.1023 4.3111 0.0747 9 6 6.4066 4.9813 -1.0954 10 6 6.8560 6.2876 -1.0467 11 6 7.0110 6.9203 0.1726 12 6 6.7115 6.2483 1.3429 13 6 6.2577 4.9435 1.2940 14 7 3.6642 3.4873 -1.3436 15 6 4.0866 2.6603 -2.4818 16 6 3.7362 3.3743 -3.7888 17 6 4.1756 2.5126 -4.9743 18 6 3.8311 3.2162 -6.2617 19 1 3.3468 4.1812 -6.2368 20 6 4.1342 2.6279 -7.4713 21 7 4.7235 1.4526 -7.5016 22 14 3.7065 3.4997 -9.0671 23 1 4.4065 4.8083 -9.1192 24 1 4.1342 2.6640 -10.2176 25 1 2.2395 3.7202 -9.1329 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.8850 -0.8626 34 1 3.9330 0.9734 0.9151 35 1 5.9187 2.3615 0.9231 36 1 6.0259 2.3909 -0.8533 37 1 6.2900 4.4855 -2.0477 38 1 7.0903 6.8126 -1.9611 39 1 7.3663 7.9395 0.2108 40 1 6.8330 6.7425 2.2955 41 1 6.0241 4.4185 2.2084 42 1 2.6676 3.6443 -1.3608 43 1 5.1634 2.4985 -2.4335 44 1 3.5727 1.6998 -2.4435 45 1 2.6594 3.5361 -3.8372 46 1 4.2501 4.3348 -3.8271 47 1 5.2524 2.3504 -4.9262 48 1 3.6615 1.5523 -4.9358 49 1 4.9364 1.0386 -8.3526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258706659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = -32.447109 kcal Electronic energy + Delta-G solvation = -23031.439552 eV Core-core repulsion = 19955.854246 eV Total energy + Delta-G solvation = -3075.585305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42641 -38.96064 -36.28937 -35.41734 -34.04930 -32.56298 -31.61829 -30.87127 -28.77135 -27.70862 -25.20542 -24.55293 -23.31208 -22.49177 -22.11327 -21.60007 -20.43732 -18.46686 -17.51297 -17.15972 -16.82319 -16.50472 -16.00616 -15.75054 -15.53079 -15.24108 -14.95778 -14.65924 -14.30992 -14.14869 -14.01401 -13.67471 -13.63056 -13.47075 -13.16556 -13.03937 -12.73533 -12.67683 -12.54473 -12.28818 -12.22829 -12.00421 -11.90616 -11.73199 -11.62860 -11.50261 -11.41816 -11.29024 -11.23527 -11.06077 -10.55048 -9.67279 -9.43418 -9.14861 -8.20105 -6.31028 0.61390 0.66889 1.38676 1.41847 1.49789 2.40469 3.02385 3.12800 3.33603 3.75442 4.01713 4.03490 4.08715 4.16550 4.25488 4.28980 4.34242 4.39459 4.42229 4.52009 4.57731 4.60764 4.71931 4.78019 4.79579 4.84823 4.89159 4.93618 4.96567 4.98498 5.04775 5.13855 5.17749 5.24072 5.26554 5.30273 5.33178 5.37113 5.43785 5.49702 5.53864 5.71058 5.76572 5.77661 5.86688 5.92519 6.18340 6.28626 6.31146 6.60247 6.85583 7.38043 8.91509 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008959 B = 0.004537 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.523335 B = 6170.177599 C = 8818.890163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.152 4.152 5 C 0.101 3.899 6 H 0.091 0.909 7 C -0.075 4.075 8 C -0.069 4.069 9 C -0.111 4.111 10 C -0.138 4.138 11 C -0.136 4.136 12 C -0.127 4.127 13 C -0.127 4.127 14 N -0.678 5.678 15 C 0.075 3.925 16 C -0.089 4.089 17 C 0.029 3.971 18 C -0.543 4.543 19 H 0.057 0.943 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.267 1.267 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.341 0.659 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.045 0.955 46 H 0.047 0.953 47 H -0.011 1.011 48 H -0.011 1.011 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 3.750 22.384 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.191 4.191 5 C -0.009 4.009 6 H 0.109 0.891 7 C -0.113 4.113 8 C -0.069 4.069 9 C -0.129 4.129 10 C -0.156 4.156 11 C -0.154 4.154 12 C -0.145 4.145 13 C -0.145 4.145 14 N -0.308 5.308 15 C -0.054 4.054 16 C -0.128 4.128 17 C -0.009 4.009 18 C -0.581 4.581 19 H 0.075 0.925 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.787 3.213 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.192 1.192 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.007 0.993 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.514 4.045 22.236 22.607 hybrid contribution -0.643 -0.673 -1.511 1.775 sum -1.157 3.371 20.726 21.030 Atomic orbital electron populations 1.21768 0.95469 1.01868 1.01818 1.21505 0.96269 0.96717 1.01640 1.21564 0.94891 0.97052 1.01808 1.22303 0.96165 0.98047 1.02573 1.21549 0.94169 0.93157 0.92016 0.89092 1.20729 0.95045 0.92807 1.02720 1.19801 0.97780 0.96344 0.93023 1.21054 0.98638 0.95180 0.98035 1.21322 1.00409 0.95225 0.98659 1.21344 1.00965 1.00642 0.92403 1.21389 0.99393 0.94920 0.98828 1.21262 1.00373 0.95495 0.97361 1.60575 1.20297 1.48546 1.01417 1.21794 0.99640 0.94052 0.89929 1.21338 0.99531 0.98509 0.93374 1.18931 0.94484 0.94382 0.93071 1.21658 1.39066 1.04917 0.92462 0.92493 1.25960 0.94934 0.95664 1.03126 1.70086 1.42951 1.17300 1.26978 0.85539 0.79033 0.78548 0.78177 1.19263 1.20679 1.19157 0.93626 0.92400 0.91798 0.93677 0.91110 0.90704 0.93464 0.93145 0.90041 0.88884 0.92544 0.88277 0.86403 0.84697 0.83975 0.84286 0.83992 0.92300 0.95729 0.93654 0.93450 0.99311 0.99301 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.98 16 2 C -0.12 -2.38 5.93 30.59 0.18 -2.20 16 3 C -0.12 -2.25 5.03 30.59 0.15 -2.09 16 4 C -0.15 -3.08 4.27 30.59 0.13 -2.95 16 5 C 0.10 2.19 2.53 44.92 0.11 2.31 16 6 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.08 -1.70 4.75 29.85 0.14 -1.56 16 8 C -0.07 -1.72 4.95 -19.87 -0.10 -1.82 16 9 C -0.11 -3.24 9.32 22.27 0.21 -3.03 16 10 C -0.14 -3.68 10.05 22.27 0.22 -3.45 16 11 C -0.14 -2.98 10.05 22.27 0.22 -2.76 16 12 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 13 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 14 N -0.68 -18.58 5.65 -491.57 -2.78 -21.36 16 15 C 0.07 2.57 4.76 86.30 0.41 2.98 16 16 C -0.09 -3.82 5.45 30.60 0.17 -3.65 16 17 C 0.03 1.57 4.97 29.85 0.15 1.72 16 18 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.00 0.05 5.46 84.66 0.46 0.51 16 21 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 22 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.05 1.07 6.86 -2.39 -0.02 1.05 16 33 H 0.05 1.26 6.21 -2.38 -0.01 1.25 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 36 H 0.06 1.50 6.19 -2.39 -0.01 1.49 16 37 H 0.10 3.34 7.72 -2.91 -0.02 3.32 16 38 H 0.12 2.98 8.06 -2.90 -0.02 2.96 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.34 8.93 7.51 -89.69 -0.67 8.25 16 43 H 0.06 2.12 5.87 -2.39 -0.01 2.11 16 44 H 0.02 0.86 6.41 -2.38 -0.02 0.85 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 47 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -65.68 386.92 3.60 -62.08 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.21 Total: 23.91 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 3.85 Total: -54.27 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.49 Total: -78.92 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.68 3.60 -62.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258706659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.633 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds