Wall clock time and date at job start Tue Mar 31 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 C 1.52999 * 109.46894 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46628 * 175.10664 * 4 3 2 6 6 H 1.08993 * 109.47560 * 303.36886 * 5 4 3 7 7 C 1.53007 * 109.46837 * 183.36971 * 5 4 3 8 8 C 1.50702 * 109.46930 * 175.00629 * 7 5 4 9 9 C 1.38244 * 119.99470 * 269.72140 * 8 7 5 10 10 C 1.38231 * 119.99534 * 179.76759 * 9 8 7 11 11 C 1.38237 * 120.00468 * 0.50589 * 10 9 8 12 12 C 1.38236 * 119.99579 * 359.75114 * 11 10 9 13 13 C 1.38231 * 120.00104 * 359.97438 * 12 11 10 14 14 N 1.46894 * 109.47104 * 63.37126 * 5 4 3 15 15 C 1.46899 * 111.00313 * 55.84593 * 14 5 4 16 16 C 1.52999 * 109.47621 * 174.86183 * 15 14 5 17 17 C 1.52993 * 109.47424 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47280 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99804 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00360 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47277 * 59.99956 * 22 20 18 24 24 H 1.48496 * 109.47338 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46905 * 299.99884 * 22 20 18 26 26 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47446 * 300.00163 * 1 2 3 28 28 H 1.09006 * 109.47063 * 60.00005 * 1 2 3 29 29 H 1.09000 * 109.47446 * 239.99837 * 2 1 3 30 30 H 1.08996 * 109.47017 * 120.00069 * 2 1 3 31 31 H 1.09004 * 109.46971 * 60.00130 * 3 2 1 32 32 H 1.08996 * 109.47282 * 299.99907 * 3 2 1 33 33 H 1.08999 * 109.47124 * 55.11507 * 4 3 2 34 34 H 1.09000 * 109.47408 * 295.10687 * 4 3 2 35 35 H 1.09003 * 109.46754 * 295.00092 * 7 5 4 36 36 H 1.08996 * 109.47256 * 55.00240 * 7 5 4 37 37 H 1.07994 * 120.00093 * 0.02562 * 9 8 7 38 38 H 1.07998 * 120.00075 * 180.23247 * 10 9 8 39 39 H 1.07998 * 120.00293 * 179.71880 * 11 10 9 40 40 H 1.08003 * 119.99864 * 179.97438 * 12 11 10 41 41 H 1.08003 * 119.99886 * 179.97438 * 13 12 11 42 42 H 1.00907 * 111.00309 * 179.80122 * 14 5 4 43 43 H 1.09002 * 109.47104 * 54.86717 * 15 14 5 44 44 H 1.08999 * 109.47386 * 294.86678 * 15 14 5 45 45 H 1.08999 * 109.47144 * 300.00643 * 16 15 14 46 46 H 1.09010 * 109.46802 * 60.00083 * 16 15 14 47 47 H 1.08999 * 109.47758 * 300.00601 * 17 16 15 48 48 H 1.09002 * 109.46929 * 60.00761 * 17 16 15 49 49 H 0.96999 * 120.00325 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8798 -0.1224 6 1 3.6685 3.3355 -1.0230 7 6 5.6077 2.8734 -0.2063 8 6 6.1032 4.2755 -0.4504 9 6 6.2702 4.7342 -1.7438 10 6 6.7202 6.0219 -1.9677 11 6 7.0130 6.8475 -0.8984 12 6 6.8510 6.3871 0.3949 13 6 6.3957 5.1013 0.6189 14 7 3.6573 3.6517 1.0538 15 6 4.1117 3.0108 2.2951 16 6 3.7659 3.9054 3.4872 17 6 4.2385 3.2377 4.7800 18 6 3.8974 4.1186 5.9542 19 1 3.3935 5.0604 5.7943 20 6 4.2286 3.7223 7.2326 21 7 4.8427 2.5758 7.4273 22 14 3.8052 4.8139 8.6881 23 1 2.3351 5.0154 8.7446 24 1 4.2640 4.1658 9.9429 25 1 4.4794 6.1280 8.5339 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9336 0.8546 -0.8421 34 1 3.9329 1.0066 0.9314 35 1 6.0214 2.4998 0.7304 36 1 5.9238 2.2284 -1.0261 37 1 6.0453 4.0878 -2.5792 38 1 6.8471 6.3815 -2.9781 39 1 7.3689 7.8521 -1.0734 40 1 7.0802 7.0320 1.2304 41 1 6.2695 4.7415 1.6293 42 1 3.9849 4.6045 0.9979 43 1 5.1907 2.8622 2.2534 44 1 3.6162 2.0466 2.4087 45 1 4.2614 4.8696 3.3736 46 1 2.6868 4.0541 3.5289 47 1 3.7428 2.2736 4.8934 48 1 5.3175 3.0887 4.7386 49 1 5.0761 2.2971 8.3266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258706660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:29 Heat of formation + Delta-G solvation = -20.161062 kcal Electronic energy + Delta-G solvation = -23035.957468 eV Core-core repulsion = 19960.904926 eV Total energy + Delta-G solvation = -3075.052542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.71335 -37.79201 -35.03412 -33.94604 -32.39698 -31.26218 -30.90022 -29.69035 -27.69123 -25.96164 -24.21302 -22.91488 -22.56652 -21.57157 -20.69585 -20.28082 -19.42952 -16.79752 -16.35772 -15.98124 -15.44769 -15.20009 -14.98188 -14.52319 -14.29484 -14.11966 -13.92072 -13.38574 -13.35665 -13.08228 -12.80032 -12.59426 -12.36380 -12.22955 -11.98233 -11.62332 -11.38016 -11.33679 -11.18776 -10.97272 -10.91006 -10.82577 -10.71493 -10.50822 -10.48766 -10.35056 -10.15922 -9.65097 -9.29772 -9.03250 -8.94759 -8.77706 -8.31523 -7.98259 -5.96930 -3.98843 1.32462 1.37602 3.35280 3.39442 3.42227 3.75096 4.45177 4.53925 4.64016 4.81822 4.90698 5.00464 5.05570 5.09491 5.13228 5.26024 5.34497 5.38391 5.38928 5.47108 5.52707 5.60841 5.71927 5.74358 5.82111 5.87114 5.93307 5.94628 5.97838 6.03928 6.06848 6.14715 6.18795 6.24887 6.38035 6.43591 6.49400 6.52667 6.58977 6.64275 6.76767 6.86994 6.99455 7.17295 7.45243 7.70960 7.74172 7.87100 8.03630 8.47208 9.08173 9.64997 11.14424 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.004544 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.903760 B = 6160.849120 C = 8837.782412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.115 4.115 5 C 0.096 3.904 6 H 0.076 0.924 7 C -0.123 4.123 8 C -0.077 4.077 9 C -0.120 4.120 10 C -0.121 4.121 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.117 4.117 14 N -0.680 5.680 15 C 0.052 3.948 16 C -0.108 4.108 17 C 0.024 3.976 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.338 0.662 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.054 0.946 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 0.640 -20.729 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.152 4.152 5 C -0.015 4.015 6 H 0.095 0.905 7 C -0.162 4.162 8 C -0.077 4.077 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.147 4.147 12 C -0.131 4.131 13 C -0.135 4.135 14 N -0.310 5.310 15 C -0.076 4.076 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.008 0.236 -20.559 20.560 hybrid contribution 0.897 0.798 0.874 1.484 sum 0.889 1.034 -19.685 19.732 Atomic orbital electron populations 1.21760 0.96180 1.01122 1.01824 1.21564 0.95706 0.97626 1.01497 1.21481 0.94663 0.95728 1.02837 1.21699 0.96450 0.95112 1.01971 1.21590 0.90510 0.94859 0.94545 0.90542 1.21459 0.98561 0.93018 1.03188 1.19891 0.98512 0.96123 0.93179 1.21004 1.00506 0.96046 0.96253 1.21094 0.99874 0.94216 0.98767 1.21128 1.00969 0.99685 0.92869 1.21208 0.98904 0.95995 0.97007 1.21257 0.99013 0.94110 0.99160 1.60763 1.63253 1.05629 1.01397 1.22224 0.97214 0.99094 0.89065 1.21640 1.00802 0.97591 0.94592 1.19038 0.96181 0.95871 0.90273 1.21222 1.37861 1.05117 0.91482 0.92801 1.25013 0.95280 0.95150 0.98976 1.69953 1.41077 1.20926 1.21648 0.86680 0.78833 0.80719 0.81908 1.20236 1.21328 1.20297 0.93229 0.92510 0.93077 0.92737 0.92122 0.90493 0.92664 0.92320 0.91370 0.90231 0.90896 0.86410 0.86429 0.86386 0.85948 0.85629 0.84267 0.95565 0.91137 0.93892 0.92686 0.96650 0.96935 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.15 0.37 -1.15 16 2 C -0.13 -1.34 5.93 -26.73 -0.16 -1.50 16 3 C -0.11 -1.28 5.03 -26.73 -0.13 -1.41 16 4 C -0.11 -1.32 4.32 -26.73 -0.12 -1.43 16 5 C 0.10 1.14 2.57 -67.71 -0.17 0.97 16 6 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.12 -1.42 4.71 -27.88 -0.13 -1.55 16 8 C -0.08 -0.92 4.72 -104.62 -0.49 -1.42 16 9 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 10 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 11 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 12 C -0.11 -1.35 10.05 -39.58 -0.40 -1.75 16 13 C -0.12 -1.53 8.27 -39.59 -0.33 -1.86 16 14 N -0.68 -9.71 5.91 -106.73 -0.63 -10.34 16 15 C 0.05 0.88 4.68 -3.82 -0.02 0.86 16 16 C -0.11 -2.23 5.36 -26.73 -0.14 -2.38 16 17 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 18 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 19 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.88 6.27 -51.93 -0.33 0.55 16 35 H 0.08 1.03 6.12 -51.93 -0.32 0.71 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.13 1.79 7.36 -52.48 -0.39 1.40 16 42 H 0.34 4.92 6.75 -39.29 -0.27 4.65 16 43 H 0.03 0.44 5.57 -51.93 -0.29 0.16 16 44 H 0.07 1.23 6.47 -51.93 -0.34 0.89 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -29.67 385.38 -11.62 -41.29 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -9.05 Total: 3.61 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -3.45 Total: -30.82 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.11 Total: -36.74 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.67 -11.62 -41.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258706660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.128 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds