Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 C 1.52999 * 109.46894 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46628 * 175.10664 * 4 3 2 6 6 H 1.08993 * 109.47560 * 303.36886 * 5 4 3 7 7 C 1.53007 * 109.46837 * 183.36971 * 5 4 3 8 8 C 1.50702 * 109.46930 * 175.00629 * 7 5 4 9 9 C 1.38244 * 119.99470 * 269.72140 * 8 7 5 10 10 C 1.38231 * 119.99534 * 179.76759 * 9 8 7 11 11 C 1.38237 * 120.00468 * 0.50589 * 10 9 8 12 12 C 1.38236 * 119.99579 * 359.75114 * 11 10 9 13 13 C 1.38231 * 120.00104 * 359.97438 * 12 11 10 14 14 N 1.46894 * 109.47104 * 63.37126 * 5 4 3 15 15 C 1.46899 * 111.00313 * 55.84593 * 14 5 4 16 16 C 1.52999 * 109.47621 * 174.86183 * 15 14 5 17 17 C 1.52993 * 109.47424 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47280 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99804 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00360 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47277 * 59.99956 * 22 20 18 24 24 H 1.48496 * 109.47338 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46905 * 299.99884 * 22 20 18 26 26 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47446 * 300.00163 * 1 2 3 28 28 H 1.09006 * 109.47063 * 60.00005 * 1 2 3 29 29 H 1.09000 * 109.47446 * 239.99837 * 2 1 3 30 30 H 1.08996 * 109.47017 * 120.00069 * 2 1 3 31 31 H 1.09004 * 109.46971 * 60.00130 * 3 2 1 32 32 H 1.08996 * 109.47282 * 299.99907 * 3 2 1 33 33 H 1.08999 * 109.47124 * 55.11507 * 4 3 2 34 34 H 1.09000 * 109.47408 * 295.10687 * 4 3 2 35 35 H 1.09003 * 109.46754 * 295.00092 * 7 5 4 36 36 H 1.08996 * 109.47256 * 55.00240 * 7 5 4 37 37 H 1.07994 * 120.00093 * 0.02562 * 9 8 7 38 38 H 1.07998 * 120.00075 * 180.23247 * 10 9 8 39 39 H 1.07998 * 120.00293 * 179.71880 * 11 10 9 40 40 H 1.08003 * 119.99864 * 179.97438 * 12 11 10 41 41 H 1.08003 * 119.99886 * 179.97438 * 13 12 11 42 42 H 1.00907 * 111.00309 * 179.80122 * 14 5 4 43 43 H 1.09002 * 109.47104 * 54.86717 * 15 14 5 44 44 H 1.08999 * 109.47386 * 294.86678 * 15 14 5 45 45 H 1.08999 * 109.47144 * 300.00643 * 16 15 14 46 46 H 1.09010 * 109.46802 * 60.00083 * 16 15 14 47 47 H 1.08999 * 109.47758 * 300.00601 * 17 16 15 48 48 H 1.09002 * 109.46929 * 60.00761 * 17 16 15 49 49 H 0.96999 * 120.00325 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8798 -0.1224 6 1 3.6685 3.3355 -1.0230 7 6 5.6077 2.8734 -0.2063 8 6 6.1032 4.2755 -0.4504 9 6 6.2702 4.7342 -1.7438 10 6 6.7202 6.0219 -1.9677 11 6 7.0130 6.8475 -0.8984 12 6 6.8510 6.3871 0.3949 13 6 6.3957 5.1013 0.6189 14 7 3.6573 3.6517 1.0538 15 6 4.1117 3.0108 2.2951 16 6 3.7659 3.9054 3.4872 17 6 4.2385 3.2377 4.7800 18 6 3.8974 4.1186 5.9542 19 1 3.3935 5.0604 5.7943 20 6 4.2286 3.7223 7.2326 21 7 4.8427 2.5758 7.4273 22 14 3.8052 4.8139 8.6881 23 1 2.3351 5.0154 8.7446 24 1 4.2640 4.1658 9.9429 25 1 4.4794 6.1280 8.5339 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9336 0.8546 -0.8421 34 1 3.9329 1.0066 0.9314 35 1 6.0214 2.4998 0.7304 36 1 5.9238 2.2284 -1.0261 37 1 6.0453 4.0878 -2.5792 38 1 6.8471 6.3815 -2.9781 39 1 7.3689 7.8521 -1.0734 40 1 7.0802 7.0320 1.2304 41 1 6.2695 4.7415 1.6293 42 1 3.9849 4.6045 0.9979 43 1 5.1907 2.8622 2.2534 44 1 3.6162 2.0466 2.4087 45 1 4.2614 4.8696 3.3736 46 1 2.6868 4.0541 3.5289 47 1 3.7428 2.2736 4.8934 48 1 5.3175 3.0887 4.7386 49 1 5.0761 2.2971 8.3266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258706660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = -33.974988 kcal Electronic energy + Delta-G solvation = -23036.556485 eV Core-core repulsion = 19960.904926 eV Total energy + Delta-G solvation = -3075.651559 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64998 -38.82528 -36.32146 -35.48685 -34.03880 -32.46253 -31.77934 -31.00412 -28.79493 -27.63292 -25.21478 -24.59355 -23.44641 -22.44039 -22.14260 -21.56346 -20.51814 -18.48223 -17.62858 -17.22257 -16.61519 -16.45929 -16.09506 -15.96814 -15.55332 -15.20126 -15.08028 -14.47923 -14.29284 -14.16159 -14.01507 -13.89905 -13.61407 -13.52872 -13.28873 -13.05357 -12.79015 -12.55381 -12.55294 -12.27320 -12.24173 -12.05098 -11.85503 -11.80638 -11.67904 -11.44239 -11.37972 -11.25230 -11.15493 -11.07375 -10.55351 -9.82557 -9.69877 -9.14021 -8.20287 -6.31342 0.46004 0.50662 1.38738 1.41973 1.49888 2.40411 2.88240 3.12627 3.35081 3.69572 3.95441 4.01314 4.14794 4.18169 4.20644 4.26187 4.30554 4.32471 4.38655 4.51106 4.52514 4.60441 4.66686 4.71146 4.75657 4.81994 4.89939 4.92590 5.00946 5.06467 5.07810 5.14660 5.18816 5.21882 5.22266 5.28130 5.30488 5.39769 5.51321 5.56095 5.60222 5.65177 5.65697 5.74173 5.75220 5.85412 6.14689 6.16736 6.29507 6.53219 6.85047 7.37742 8.91376 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.004544 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.903760 B = 6160.849120 C = 8837.782412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.112 4.112 5 C 0.099 3.901 6 H 0.091 0.909 7 C -0.117 4.117 8 C -0.086 4.086 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.129 4.129 13 C -0.139 4.139 14 N -0.678 5.678 15 C 0.072 3.928 16 C -0.093 4.093 17 C 0.030 3.970 18 C -0.544 4.544 19 H 0.057 0.943 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.267 1.267 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.338 0.662 43 H 0.023 0.977 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.049 0.951 47 H -0.010 1.010 48 H -0.011 1.011 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 1.595 -22.870 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.150 4.150 5 C -0.010 4.010 6 H 0.109 0.891 7 C -0.156 4.156 8 C -0.087 4.087 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.149 4.149 12 C -0.147 4.147 13 C -0.157 4.157 14 N -0.309 5.309 15 C -0.057 4.057 16 C -0.131 4.131 17 C -0.008 4.008 18 C -0.582 4.582 19 H 0.076 0.924 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.788 3.212 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.192 1.192 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.287 1.195 -22.717 22.750 hybrid contribution 1.010 0.497 1.485 1.863 sum 0.722 1.691 -21.232 21.311 Atomic orbital electron populations 1.21760 0.95734 1.01725 1.01647 1.21552 0.96132 0.96907 1.01665 1.21414 0.94697 0.96233 1.01897 1.21693 0.96347 0.94959 1.01970 1.21653 0.90997 0.94803 0.93597 0.89125 1.21378 0.97899 0.93357 1.02919 1.19954 0.99022 0.96048 0.93634 1.21292 0.99818 0.96732 0.96112 1.21477 0.98534 0.93826 0.99991 1.21427 1.00334 1.00853 0.92269 1.21356 0.99429 0.95754 0.98140 1.21182 1.00860 0.95147 0.98499 1.60712 1.63231 1.05777 1.01160 1.21849 0.96883 0.97879 0.89067 1.21387 1.00050 0.97865 0.93787 1.18918 0.94390 0.94888 0.92604 1.21655 1.38134 1.05635 0.92726 0.92446 1.25964 0.94901 0.96607 1.02216 1.70088 1.41951 1.22721 1.22541 0.85528 0.78998 0.78863 0.77847 1.19216 1.20682 1.19173 0.92268 0.93826 0.92109 0.91079 0.93389 0.93271 0.91640 0.89954 0.93302 0.92345 0.88765 0.84112 0.83581 0.84190 0.85797 0.88081 0.84278 0.95897 0.91872 0.93666 0.93234 0.99186 0.99289 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.18 16 2 C -0.13 -2.54 5.93 30.59 0.18 -2.36 16 3 C -0.10 -2.35 5.03 30.60 0.15 -2.20 16 4 C -0.11 -2.46 4.32 30.59 0.13 -2.33 16 5 C 0.10 2.26 2.57 44.92 0.12 2.38 16 6 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 7 C -0.12 -2.58 4.71 29.85 0.14 -2.44 16 8 C -0.09 -2.00 4.72 -19.86 -0.09 -2.09 16 9 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 10 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 11 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 12 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 13 C -0.14 -3.69 8.27 22.27 0.18 -3.50 16 14 N -0.68 -19.51 5.91 -491.58 -2.90 -22.42 16 15 C 0.07 2.54 4.68 86.30 0.40 2.94 16 16 C -0.09 -4.00 5.36 30.59 0.16 -3.83 16 17 C 0.03 1.61 4.97 29.85 0.15 1.76 16 18 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 20 C 0.00 0.05 5.46 84.66 0.46 0.51 16 21 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 22 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.38 7.85 -2.39 -0.02 1.36 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.27 6.27 -2.39 -0.01 1.26 16 35 H 0.06 1.55 6.12 -2.39 -0.01 1.53 16 36 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.10 3.11 7.36 -2.91 -0.02 3.09 16 42 H 0.34 9.90 6.75 -89.69 -0.61 9.30 16 43 H 0.02 0.83 5.57 -2.39 -0.01 0.81 16 44 H 0.06 2.32 6.47 -2.39 -0.02 2.30 16 45 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 47 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 48 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.21 385.38 3.51 -61.70 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.28 Total: 25.23 kcal Atomic # 6 Polarization: -57.95 SS G_CDS: 3.83 Total: -54.12 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.62 Total: -79.98 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.21 3.51 -61.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258706660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.724 kcal (2) G-P(sol) polarization free energy of solvation -65.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds