Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 C 1.52996 * 109.47376 * 184.95310 * 3 2 1 5 5 C 1.52994 * 109.47248 * 185.41677 * 4 3 2 6 6 H 1.09003 * 109.47100 * 306.22512 * 5 4 3 7 7 C 1.52999 * 109.47270 * 186.22514 * 5 4 3 8 8 C 1.50697 * 109.47183 * 174.99957 * 7 5 4 9 9 C 1.38235 * 120.00079 * 90.00162 * 8 7 5 10 10 C 1.38238 * 120.00120 * 180.02562 * 9 8 7 11 11 C 1.38234 * 120.00029 * 359.97438 * 10 9 8 12 12 C 1.38233 * 119.99891 * 0.25293 * 11 10 9 13 13 C 1.38232 * 120.00092 * 359.49456 * 12 11 10 14 14 N 1.46907 * 109.46939 * 66.22510 * 5 4 3 15 15 C 1.46902 * 110.99772 * 209.55298 * 14 5 4 16 16 H 1.09004 * 109.47292 * 334.31358 * 15 14 5 17 17 C 1.50698 * 109.47214 * 214.31035 * 15 14 5 18 18 H 1.08001 * 119.99765 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00387 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99380 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00320 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47095 * 60.00361 * 21 19 17 23 23 H 1.48501 * 109.47113 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47347 * 300.00195 * 21 19 17 25 25 C 1.53000 * 109.46847 * 94.31183 * 15 14 5 26 26 C 1.52998 * 109.47413 * 293.26696 * 25 15 14 27 27 H 1.08999 * 109.47219 * 184.97245 * 1 2 3 28 28 H 1.08993 * 109.47279 * 304.97240 * 1 2 3 29 29 H 1.09001 * 109.46927 * 64.97677 * 1 2 3 30 30 H 1.09002 * 109.47364 * 240.00243 * 2 1 3 31 31 H 1.08998 * 109.47492 * 120.00123 * 2 1 3 32 32 H 1.09005 * 109.46595 * 64.95784 * 3 2 1 33 33 H 1.09000 * 109.47224 * 304.95762 * 3 2 1 34 34 H 1.09001 * 109.46711 * 65.41504 * 4 3 2 35 35 H 1.08999 * 109.47493 * 305.42199 * 4 3 2 36 36 H 1.09002 * 109.47198 * 55.00210 * 7 5 4 37 37 H 1.09002 * 109.47379 * 294.99824 * 7 5 4 38 38 H 1.08004 * 119.99926 * 359.97438 * 9 8 7 39 39 H 1.07999 * 119.99764 * 179.97438 * 10 9 8 40 40 H 1.07995 * 119.99904 * 179.97438 * 11 10 9 41 41 H 1.07997 * 119.99958 * 179.72620 * 12 11 10 42 42 H 1.08000 * 120.00251 * 180.23320 * 13 12 11 43 43 H 1.00893 * 110.99767 * 333.50976 * 14 5 4 44 44 H 0.97003 * 119.99603 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47468 * 53.27344 * 25 15 14 46 46 H 1.09007 * 109.46952 * 173.26920 * 25 15 14 47 47 H 1.09000 * 109.46983 * 305.96868 * 26 25 15 48 48 H 1.09002 * 109.47239 * 65.96465 * 26 25 15 49 49 H 1.08999 * 109.47512 * 185.96886 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 -0.1245 5 6 4.0859 2.8764 0.0109 6 1 3.5737 3.5188 -0.7054 7 6 5.5902 2.9003 -0.2673 8 6 6.0808 4.3252 -0.2549 9 6 6.5244 4.8932 0.9247 10 6 6.9739 6.2004 0.9362 11 6 6.9804 6.9394 -0.2320 12 6 6.5324 6.3729 -1.4107 13 6 6.0878 5.0641 -1.4233 14 7 3.8322 3.3629 1.3737 15 6 3.6432 4.8197 1.3859 16 1 4.1596 5.2603 0.5330 17 6 4.2061 5.3886 2.6628 18 1 4.6594 4.7336 3.3920 19 6 4.1425 6.7453 2.9000 20 7 3.5900 7.5429 2.0121 21 14 4.8397 7.4505 4.4830 22 1 6.2893 7.1392 4.5674 23 1 4.6487 8.9231 4.4953 24 1 4.1360 6.8498 5.6446 25 6 2.1497 5.1408 1.2993 26 6 1.6143 4.7125 -0.0684 27 1 -0.3633 -1.0238 0.0891 28 1 -0.3633 0.5890 0.8420 29 1 -0.3633 0.4347 -0.9312 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7509 1.9300 0.9311 33 1 1.6060 1.9814 -0.8422 34 1 3.8504 1.0443 -1.0975 35 1 3.9946 0.8253 0.6630 36 1 5.7862 2.4571 -1.2437 37 1 6.1111 2.3301 0.5018 38 1 6.5189 4.3160 1.8375 39 1 7.3200 6.6443 1.8579 40 1 7.3312 7.9607 -0.2230 41 1 6.5333 6.9516 -2.3225 42 1 5.7414 4.6202 -2.3449 43 1 3.0399 2.8920 1.7840 44 1 3.5449 8.4973 2.1791 45 1 1.6164 4.6029 2.0830 46 1 2.0006 6.2129 1.4284 47 1 2.2169 5.1690 -0.8536 48 1 1.6662 3.6272 -0.1553 49 1 0.5786 5.0361 -0.1708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258708018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -0.016714 kcal Electronic energy + Delta-G solvation = -24913.581128 eV Core-core repulsion = 21839.402111 eV Total energy + Delta-G solvation = -3074.179018 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.98354 -37.26535 -34.99292 -33.49468 -31.65348 -30.71450 -29.99953 -29.35275 -27.30106 -25.81785 -23.87964 -22.67654 -21.66341 -21.27536 -20.29767 -19.78720 -19.37875 -16.17781 -15.91102 -15.59195 -15.06790 -14.61853 -14.40087 -14.11462 -13.73143 -13.63471 -13.11456 -12.99232 -12.72639 -12.47627 -12.37284 -12.22898 -12.09395 -11.77036 -11.48200 -11.18876 -11.14245 -11.06412 -10.96018 -10.74048 -10.68005 -10.56042 -10.49733 -10.22735 -10.07698 -9.91106 -9.82447 -9.62304 -9.47323 -8.87638 -8.24931 -7.88334 -7.62276 -7.01036 -5.85915 -3.85806 2.28930 2.39963 3.35583 3.41273 3.44095 4.50643 4.69031 4.94057 5.04581 5.18929 5.27383 5.43951 5.47026 5.55835 5.67566 5.69540 5.76605 5.84438 5.85731 5.93755 5.99190 6.06153 6.11571 6.13269 6.22070 6.24127 6.29447 6.32384 6.37778 6.41384 6.50492 6.51740 6.57054 6.63156 6.75988 6.93390 6.95044 7.00931 7.13425 7.32267 7.38357 7.48779 7.59403 7.64378 7.87538 7.96875 8.01361 8.46335 8.74368 8.77069 9.18376 9.76091 11.19675 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.006435 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.006177 B = 4349.938177 C = 5467.366843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.122 4.122 5 C 0.087 3.913 6 H 0.046 0.954 7 C -0.064 4.064 8 C -0.079 4.079 9 C -0.048 4.048 10 C -0.099 4.099 11 C -0.123 4.123 12 C -0.133 4.133 13 C -0.130 4.130 14 N -0.678 5.678 15 C 0.214 3.786 16 H 0.051 0.949 17 C -0.480 4.480 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.149 4.149 26 C -0.161 4.161 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.322 0.678 44 H 0.256 0.744 45 H 0.027 0.973 46 H 0.096 0.904 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -9.552 -6.335 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.162 4.162 4 C -0.160 4.160 5 C -0.024 4.024 6 H 0.064 0.936 7 C -0.102 4.102 8 C -0.079 4.079 9 C -0.066 4.066 10 C -0.117 4.117 11 C -0.141 4.141 12 C -0.152 4.152 13 C -0.148 4.148 14 N -0.309 5.309 15 C 0.106 3.894 16 H 0.069 0.931 17 C -0.518 4.518 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.189 4.189 26 C -0.218 4.218 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.140 0.860 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.069 -9.313 -6.196 11.237 hybrid contribution -0.847 0.880 0.535 1.334 sum 0.222 -8.432 -5.661 10.159 Atomic orbital electron populations 1.21781 0.96282 1.01120 1.01836 1.21527 0.95506 0.97325 1.01608 1.21796 0.95989 0.96101 1.02339 1.21814 0.94953 0.97722 1.01468 1.21578 0.94160 0.93697 0.92946 0.93635 1.20599 0.96232 0.93134 1.00226 1.19616 0.99007 0.95982 0.93291 1.20874 0.94090 0.94852 0.96757 1.20885 0.99431 0.94581 0.96794 1.20862 1.01200 0.98727 0.93321 1.20767 1.01594 0.95321 0.97484 1.20763 1.02046 0.94738 0.97301 1.60859 1.45458 1.08496 1.16127 1.19427 0.90401 0.81449 0.98074 0.93126 1.21039 1.36190 0.91324 1.03284 0.92586 1.24801 0.95836 0.97157 0.95889 1.69860 1.44826 1.03728 1.34323 0.86880 0.79712 0.77815 0.84828 1.20388 1.21718 1.20699 1.22272 0.99632 1.04639 0.92326 1.22182 0.98893 1.00474 1.00272 0.93197 0.92632 0.92992 0.92465 0.92150 0.91362 0.92006 0.92399 0.91521 0.92698 0.91197 0.85886 0.87560 0.87824 0.87801 0.87879 0.85993 0.93378 0.95410 0.88542 0.94014 0.93133 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.34 5.93 -26.73 -0.16 -1.50 16 3 C -0.12 -1.62 3.70 -26.73 -0.10 -1.72 16 4 C -0.12 -1.65 4.75 -26.74 -0.13 -1.77 16 5 C 0.09 1.45 1.58 -67.71 -0.11 1.35 16 6 H 0.05 0.85 5.49 -51.93 -0.29 0.56 16 7 C -0.06 -1.05 5.03 -27.88 -0.14 -1.19 16 8 C -0.08 -1.48 3.38 -104.62 -0.35 -1.83 16 9 C -0.05 -0.97 6.11 -39.58 -0.24 -1.21 16 10 C -0.10 -2.03 10.02 -39.58 -0.40 -2.43 16 11 C -0.12 -2.38 10.05 -39.58 -0.40 -2.78 16 12 C -0.13 -2.45 10.05 -39.59 -0.40 -2.84 16 13 C -0.13 -2.37 9.63 -39.58 -0.38 -2.75 16 14 N -0.68 -13.20 5.78 -100.95 -0.58 -13.78 16 15 C 0.21 4.92 0.97 -68.86 -0.07 4.86 16 16 H 0.05 1.30 5.16 -51.93 -0.27 1.03 16 17 C -0.48 -12.25 6.75 -34.44 -0.23 -12.49 16 18 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 19 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 20 N -0.89 -24.43 11.29 55.43 0.63 -23.80 16 21 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.15 -3.43 5.18 -26.73 -0.14 -3.57 16 26 C -0.16 -3.17 8.51 37.16 0.32 -2.85 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.99 5.95 -51.93 -0.31 0.68 16 33 H 0.06 0.83 6.91 -51.93 -0.36 0.47 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 38 H 0.12 2.61 7.65 -52.48 -0.40 2.21 16 39 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.32 6.12 5.99 -39.30 -0.24 5.88 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.03 0.63 7.98 -51.93 -0.41 0.21 16 46 H 0.10 2.56 5.92 -51.93 -0.31 2.25 16 47 H 0.04 0.86 7.81 -51.93 -0.41 0.45 16 48 H 0.05 0.87 3.01 -51.93 -0.16 0.72 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -26.50 366.27 -10.71 -37.21 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -8.60 Total: 11.25 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -2.65 Total: -32.36 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.04 Total: -37.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.50 -10.71 -37.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258708018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.191 kcal (2) G-P(sol) polarization free energy of solvation -26.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds