Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 C 1.52996 * 109.47376 * 184.95310 * 3 2 1 5 5 C 1.52994 * 109.47248 * 185.41677 * 4 3 2 6 6 H 1.09003 * 109.47100 * 306.22512 * 5 4 3 7 7 C 1.52999 * 109.47270 * 186.22514 * 5 4 3 8 8 C 1.50697 * 109.47183 * 174.99957 * 7 5 4 9 9 C 1.38235 * 120.00079 * 90.00162 * 8 7 5 10 10 C 1.38238 * 120.00120 * 180.02562 * 9 8 7 11 11 C 1.38234 * 120.00029 * 359.97438 * 10 9 8 12 12 C 1.38233 * 119.99891 * 0.25293 * 11 10 9 13 13 C 1.38232 * 120.00092 * 359.49456 * 12 11 10 14 14 N 1.46907 * 109.46939 * 66.22510 * 5 4 3 15 15 C 1.46902 * 110.99772 * 209.55298 * 14 5 4 16 16 H 1.09004 * 109.47292 * 334.31358 * 15 14 5 17 17 C 1.50698 * 109.47214 * 214.31035 * 15 14 5 18 18 H 1.08001 * 119.99765 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00387 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99380 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00320 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47095 * 60.00361 * 21 19 17 23 23 H 1.48501 * 109.47113 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47347 * 300.00195 * 21 19 17 25 25 C 1.53000 * 109.46847 * 94.31183 * 15 14 5 26 26 C 1.52998 * 109.47413 * 293.26696 * 25 15 14 27 27 H 1.08999 * 109.47219 * 184.97245 * 1 2 3 28 28 H 1.08993 * 109.47279 * 304.97240 * 1 2 3 29 29 H 1.09001 * 109.46927 * 64.97677 * 1 2 3 30 30 H 1.09002 * 109.47364 * 240.00243 * 2 1 3 31 31 H 1.08998 * 109.47492 * 120.00123 * 2 1 3 32 32 H 1.09005 * 109.46595 * 64.95784 * 3 2 1 33 33 H 1.09000 * 109.47224 * 304.95762 * 3 2 1 34 34 H 1.09001 * 109.46711 * 65.41504 * 4 3 2 35 35 H 1.08999 * 109.47493 * 305.42199 * 4 3 2 36 36 H 1.09002 * 109.47198 * 55.00210 * 7 5 4 37 37 H 1.09002 * 109.47379 * 294.99824 * 7 5 4 38 38 H 1.08004 * 119.99926 * 359.97438 * 9 8 7 39 39 H 1.07999 * 119.99764 * 179.97438 * 10 9 8 40 40 H 1.07995 * 119.99904 * 179.97438 * 11 10 9 41 41 H 1.07997 * 119.99958 * 179.72620 * 12 11 10 42 42 H 1.08000 * 120.00251 * 180.23320 * 13 12 11 43 43 H 1.00893 * 110.99767 * 333.50976 * 14 5 4 44 44 H 0.97003 * 119.99603 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47468 * 53.27344 * 25 15 14 46 46 H 1.09007 * 109.46952 * 173.26920 * 25 15 14 47 47 H 1.09000 * 109.46983 * 305.96868 * 26 25 15 48 48 H 1.09002 * 109.47239 * 65.96465 * 26 25 15 49 49 H 1.08999 * 109.47512 * 185.96886 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 -0.1245 5 6 4.0859 2.8764 0.0109 6 1 3.5737 3.5188 -0.7054 7 6 5.5902 2.9003 -0.2673 8 6 6.0808 4.3252 -0.2549 9 6 6.5244 4.8932 0.9247 10 6 6.9739 6.2004 0.9362 11 6 6.9804 6.9394 -0.2320 12 6 6.5324 6.3729 -1.4107 13 6 6.0878 5.0641 -1.4233 14 7 3.8322 3.3629 1.3737 15 6 3.6432 4.8197 1.3859 16 1 4.1596 5.2603 0.5330 17 6 4.2061 5.3886 2.6628 18 1 4.6594 4.7336 3.3920 19 6 4.1425 6.7453 2.9000 20 7 3.5900 7.5429 2.0121 21 14 4.8397 7.4505 4.4830 22 1 6.2893 7.1392 4.5674 23 1 4.6487 8.9231 4.4953 24 1 4.1360 6.8498 5.6446 25 6 2.1497 5.1408 1.2993 26 6 1.6143 4.7125 -0.0684 27 1 -0.3633 -1.0238 0.0891 28 1 -0.3633 0.5890 0.8420 29 1 -0.3633 0.4347 -0.9312 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7509 1.9300 0.9311 33 1 1.6060 1.9814 -0.8422 34 1 3.8504 1.0443 -1.0975 35 1 3.9946 0.8253 0.6630 36 1 5.7862 2.4571 -1.2437 37 1 6.1111 2.3301 0.5018 38 1 6.5189 4.3160 1.8375 39 1 7.3200 6.6443 1.8579 40 1 7.3312 7.9607 -0.2230 41 1 6.5333 6.9516 -2.3225 42 1 5.7414 4.6202 -2.3449 43 1 3.0399 2.8920 1.7840 44 1 3.5449 8.4973 2.1791 45 1 1.6164 4.6029 2.0830 46 1 2.0006 6.2129 1.4284 47 1 2.2169 5.1690 -0.8536 48 1 1.6662 3.6272 -0.1553 49 1 0.5786 5.0361 -0.1708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258708018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -11.445156 kcal Electronic energy + Delta-G solvation = -24914.076703 eV Core-core repulsion = 21839.402111 eV Total energy + Delta-G solvation = -3074.674592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45522 -38.68826 -36.34720 -34.93867 -33.49044 -32.09265 -31.50663 -30.81986 -28.66123 -27.59467 -25.10355 -24.39342 -23.16738 -22.37830 -21.64684 -21.42895 -20.84213 -18.12123 -17.40388 -16.95397 -16.49074 -16.22587 -15.86264 -15.52765 -15.25397 -14.91188 -14.59753 -14.51414 -14.02510 -13.86633 -13.82088 -13.60097 -13.38276 -13.26527 -13.03511 -12.86994 -12.70316 -12.52137 -12.49199 -12.17562 -12.09272 -11.83138 -11.75885 -11.66471 -11.59034 -11.48167 -11.33571 -11.25012 -10.99741 -10.68707 -10.25603 -9.42118 -9.15570 -8.62289 -7.90175 -5.93813 0.79142 0.88965 1.41168 1.43699 1.48105 2.51634 3.19437 3.40869 3.82304 3.90758 4.12896 4.18725 4.26242 4.28242 4.37911 4.49148 4.50757 4.55982 4.60045 4.65902 4.68371 4.76061 4.82797 4.88442 4.90868 4.95124 5.05849 5.08788 5.12924 5.19375 5.22327 5.26368 5.29007 5.35759 5.41975 5.49660 5.50892 5.52684 5.56440 5.63545 5.76023 5.84017 5.91131 5.98352 6.04322 6.12571 6.47810 6.54059 6.93773 7.11852 7.18476 7.71833 9.13141 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.006435 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.006177 B = 4349.938177 C = 5467.366843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.122 4.122 4 C -0.112 4.112 5 C 0.089 3.911 6 H 0.032 0.968 7 C -0.062 4.062 8 C -0.082 4.082 9 C -0.062 4.062 10 C -0.120 4.120 11 C -0.138 4.138 12 C -0.137 4.137 13 C -0.135 4.135 14 N -0.680 5.680 15 C 0.229 3.771 16 H 0.030 0.970 17 C -0.478 4.478 18 H 0.042 0.958 19 C 0.030 3.970 20 N -0.910 5.910 21 Si 0.920 3.080 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.281 1.281 25 C -0.146 4.146 26 C -0.149 4.149 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.325 0.675 44 H 0.251 0.749 45 H 0.023 0.977 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.075 0.925 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -11.500 -7.945 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.160 4.160 4 C -0.150 4.150 5 C -0.021 4.021 6 H 0.050 0.950 7 C -0.100 4.100 8 C -0.083 4.083 9 C -0.080 4.080 10 C -0.138 4.138 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.153 4.153 14 N -0.311 5.311 15 C 0.120 3.880 16 H 0.047 0.953 17 C -0.517 4.517 18 H 0.060 0.940 19 C -0.168 4.168 20 N -0.551 5.551 21 Si 0.748 3.252 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.207 1.207 25 C -0.186 4.186 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.094 0.906 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.755 -11.280 -7.799 13.734 hybrid contribution -0.729 1.455 1.024 1.923 sum 0.025 -9.825 -6.775 11.934 Atomic orbital electron populations 1.21787 0.95892 1.01874 1.01547 1.21482 0.95832 0.95797 1.02363 1.21742 0.95635 0.97467 1.01146 1.21745 0.95127 0.95263 1.02880 1.21609 0.94425 0.95441 0.90652 0.95001 1.20657 0.95697 0.91745 1.01896 1.19905 0.98177 0.97314 0.92860 1.20793 0.95453 0.94814 0.96973 1.20940 1.00605 0.95166 0.97069 1.21094 1.01639 0.99410 0.93439 1.21137 1.00500 0.95791 0.98019 1.21120 1.01340 0.94732 0.98084 1.60735 1.45506 1.06472 1.18418 1.19064 0.89771 0.83336 0.95781 0.95273 1.21225 1.35390 0.91193 1.03913 0.93951 1.25233 0.96300 0.97583 0.97689 1.69980 1.46147 1.03421 1.35525 0.86222 0.79375 0.77001 0.82594 1.20001 1.22008 1.20702 1.22139 0.99896 1.02262 0.94291 1.22054 0.98996 1.01997 0.97548 0.91850 0.93539 0.92820 0.91139 0.91935 0.93205 0.92331 0.90102 0.91177 0.89730 0.91241 0.87655 0.88729 0.86598 0.85156 0.85193 0.85650 0.93974 0.95817 0.92115 0.95137 0.90621 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.21 5.93 30.59 0.18 -2.02 16 3 C -0.12 -2.85 3.70 30.59 0.11 -2.74 16 4 C -0.11 -2.69 4.75 30.59 0.15 -2.54 16 5 C 0.09 2.80 1.58 44.91 0.07 2.87 16 6 H 0.03 1.12 5.49 -2.39 -0.01 1.10 16 7 C -0.06 -1.90 5.03 29.85 0.15 -1.75 16 8 C -0.08 -3.02 3.38 -19.87 -0.07 -3.08 16 9 C -0.06 -2.58 6.11 22.27 0.14 -2.44 16 10 C -0.12 -5.06 10.02 22.27 0.22 -4.83 16 11 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 12 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 13 C -0.13 -4.65 9.63 22.27 0.21 -4.43 16 14 N -0.68 -26.05 5.78 -473.30 -2.74 -28.79 16 15 C 0.23 10.61 0.97 44.17 0.04 10.66 16 16 H 0.03 1.51 5.16 -2.38 -0.01 1.50 16 17 C -0.48 -24.95 6.75 25.60 0.17 -24.77 16 18 H 0.04 2.29 7.81 -2.91 -0.02 2.26 16 19 C 0.03 1.62 5.28 84.65 0.45 2.07 16 20 N -0.91 -51.29 11.29 21.45 0.24 -51.05 16 21 Si 0.92 43.91 29.54 68.60 2.03 45.94 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 C -0.15 -6.77 5.18 30.59 0.16 -6.61 16 26 C -0.15 -5.71 8.51 71.98 0.61 -5.10 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.35 5.95 -2.38 -0.01 1.34 16 33 H 0.06 1.41 6.91 -2.39 -0.02 1.39 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 37 H 0.07 2.14 8.09 -2.39 -0.02 2.12 16 38 H 0.11 4.64 7.65 -2.91 -0.02 4.61 16 39 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.32 12.09 5.99 -89.70 -0.54 11.55 16 44 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 45 H 0.02 1.07 7.98 -2.39 -0.02 1.06 16 46 H 0.06 3.28 5.92 -2.38 -0.01 3.27 16 47 H 0.03 1.22 7.81 -2.39 -0.02 1.20 16 48 H 0.08 2.49 3.01 -2.39 -0.01 2.48 16 49 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -57.78 366.27 3.66 -54.12 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.37 Total: 36.28 kcal Atomic # 6 Polarization: -60.25 SS G_CDS: 3.76 Total: -56.49 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.49 Total: -79.84 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -57.78 3.66 -54.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258708018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.674 kcal (2) G-P(sol) polarization free energy of solvation -57.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds