Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 C 1.52993 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47059 * 174.63073 * 4 3 2 6 6 H 1.08996 * 109.47457 * 306.02832 * 5 4 3 7 7 C 1.53001 * 109.47136 * 186.02261 * 5 4 3 8 8 C 1.50708 * 109.46935 * 174.99976 * 7 5 4 9 9 C 1.38236 * 119.99808 * 90.00583 * 8 7 5 10 10 C 1.38227 * 120.00102 * 180.02562 * 9 8 7 11 11 C 1.38243 * 119.99885 * 359.95488 * 10 9 8 12 12 C 1.38226 * 119.99968 * 0.27703 * 11 10 9 13 13 C 1.38234 * 119.99977 * 270.02194 * 8 7 5 14 14 N 1.46897 * 109.47087 * 66.02652 * 5 4 3 15 15 C 1.46904 * 111.00121 * 273.52442 * 14 5 4 16 16 H 1.08996 * 109.47046 * 24.35618 * 15 14 5 17 17 C 1.50693 * 109.47410 * 144.36068 * 15 14 5 18 18 H 1.08000 * 120.00083 * 359.97438 * 17 15 14 19 19 C 1.37880 * 120.00321 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99421 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00189 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47446 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47156 * 119.99980 * 21 19 17 24 24 H 1.48502 * 109.46814 * 239.99765 * 21 19 17 25 25 C 1.53005 * 109.46851 * 264.35727 * 15 14 5 26 26 C 1.53003 * 109.46839 * 66.94206 * 25 15 14 27 27 H 1.08999 * 109.46629 * 300.00136 * 1 2 3 28 28 H 1.08994 * 109.46657 * 60.00092 * 1 2 3 29 29 H 1.09003 * 109.46744 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47510 * 240.00017 * 2 1 3 31 31 H 1.09000 * 109.47347 * 119.99405 * 2 1 3 32 32 H 1.08996 * 109.46855 * 59.99616 * 3 2 1 33 33 H 1.09003 * 109.46956 * 300.00083 * 3 2 1 34 34 H 1.09001 * 109.47366 * 54.63609 * 4 3 2 35 35 H 1.08999 * 109.47498 * 294.63436 * 4 3 2 36 36 H 1.09001 * 109.46901 * 55.00823 * 7 5 4 37 37 H 1.08997 * 109.47204 * 295.00227 * 7 5 4 38 38 H 1.08006 * 119.99972 * 359.97438 * 9 8 7 39 39 H 1.08003 * 120.00587 * 179.97438 * 10 9 8 40 40 H 1.07999 * 119.99616 * 180.02562 * 11 10 9 41 41 H 1.07997 * 120.00381 * 179.72717 * 12 11 10 42 42 H 1.07995 * 120.00438 * 0.02562 * 13 8 7 43 43 H 1.00904 * 111.00411 * 37.47518 * 14 5 4 44 44 H 0.97001 * 119.99544 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.46695 * 186.93762 * 25 15 14 46 46 H 1.08994 * 109.47659 * 306.94243 * 25 15 14 47 47 H 1.09002 * 109.47175 * 186.96952 * 26 25 15 48 48 H 1.08990 * 109.47539 * 306.97447 * 26 25 15 49 49 H 1.09005 * 109.47274 * 66.97776 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8787 -0.1343 6 1 3.6317 3.3425 -1.0129 7 6 5.6026 2.8672 -0.2846 8 6 6.0927 4.2692 -0.5403 9 6 6.4353 5.0859 0.5211 10 6 6.8843 6.3720 0.2867 11 6 6.9917 6.8412 -1.0092 12 6 6.6447 6.0262 -2.0703 13 6 6.1994 4.7386 -1.8361 14 7 3.7122 3.6437 1.0646 15 6 2.3641 4.2123 0.9332 16 1 1.7874 3.6198 0.2230 17 6 1.6786 4.1953 2.2751 18 1 2.1928 3.8010 3.1391 19 6 0.3946 4.6821 2.3997 20 7 -0.2320 5.1608 1.3472 21 14 -0.4552 4.6602 4.0629 22 1 0.4570 4.0737 5.0774 23 1 -0.8077 6.0479 4.4570 24 1 -1.6909 3.8412 3.9766 25 6 2.4655 5.6540 0.4307 26 6 3.0021 5.6580 -1.0022 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.8477 -0.8372 35 1 3.9330 1.0144 0.9350 36 1 5.8802 2.2270 -1.1220 37 1 6.0551 2.4852 0.6305 38 1 6.3513 4.7194 1.5336 39 1 7.1516 7.0103 1.1159 40 1 7.3430 7.8459 -1.1924 41 1 6.7244 6.3941 -3.0825 42 1 5.9312 4.1008 -2.6653 43 1 3.7847 3.0734 1.8938 44 1 -1.1352 5.5036 1.4349 45 1 1.4783 6.1158 0.4502 46 1 3.1425 6.2162 1.0737 47 1 3.1914 6.6844 -1.3164 48 1 3.9302 5.0881 -1.0442 49 1 2.2668 5.2043 -1.6668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258708019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -5.128955 kcal Electronic energy + Delta-G solvation = -24575.478957 eV Core-core repulsion = 21501.078256 eV Total energy + Delta-G solvation = -3074.400701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.15979 -37.51218 -34.54719 -33.64720 -31.69615 -30.95706 -30.45381 -29.07216 -27.59794 -25.83105 -23.73384 -22.59525 -22.14703 -21.23463 -20.54615 -19.84309 -19.09416 -16.53894 -16.21242 -15.49675 -14.87985 -14.75723 -14.61321 -14.17136 -13.71638 -13.67142 -13.14867 -13.00923 -12.92047 -12.53342 -12.36124 -12.18886 -11.94219 -11.76659 -11.61781 -11.44121 -11.11728 -10.91669 -10.85671 -10.80832 -10.60555 -10.59690 -10.46673 -10.38335 -10.09678 -9.95833 -9.91645 -9.49041 -9.28527 -8.68523 -8.45593 -8.36988 -8.10762 -7.04596 -5.98681 -4.05047 1.80467 1.87185 3.28224 3.37178 3.40152 4.22779 4.42028 5.07304 5.17039 5.28850 5.29671 5.38213 5.39238 5.43840 5.50041 5.56312 5.74141 5.81488 5.85855 5.90267 5.97654 6.05603 6.14748 6.17980 6.27260 6.32860 6.37248 6.42072 6.46587 6.49218 6.54992 6.59280 6.61655 6.65637 6.80084 6.84629 6.87572 6.94209 7.10459 7.14184 7.24413 7.32559 7.45853 7.56620 7.70726 7.82636 8.03838 8.38647 8.50168 8.77993 9.09586 9.60519 11.05679 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.006051 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.477869 B = 4626.068637 C = 5967.912531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.086 3.914 6 H 0.079 0.921 7 C -0.072 4.072 8 C -0.051 4.051 9 C -0.083 4.083 10 C -0.122 4.122 11 C -0.133 4.133 12 C -0.126 4.126 13 C -0.124 4.124 14 N -0.677 5.677 15 C 0.211 3.789 16 H 0.024 0.976 17 C -0.518 4.518 18 H 0.056 0.944 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.102 4.102 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.328 0.672 44 H 0.259 0.741 45 H 0.084 0.916 46 H 0.031 0.969 47 H 0.021 0.979 48 H 0.065 0.935 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 -4.445 -5.274 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.180 4.180 5 C -0.025 4.025 6 H 0.097 0.903 7 C -0.110 4.110 8 C -0.051 4.051 9 C -0.101 4.101 10 C -0.141 4.141 11 C -0.151 4.151 12 C -0.144 4.144 13 C -0.143 4.143 14 N -0.307 5.307 15 C 0.104 3.896 16 H 0.042 0.958 17 C -0.557 4.557 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.523 5.523 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.141 4.141 26 C -0.213 4.213 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.311 -3.779 -5.534 12.297 hybrid contribution -1.275 -0.573 0.944 1.687 sum 9.037 -4.352 -4.590 11.030 Atomic orbital electron populations 1.21745 0.96210 1.00418 1.02421 1.21509 0.95730 0.97804 1.00596 1.21894 0.94716 0.95687 1.04337 1.22317 0.96567 0.98256 1.00854 1.21721 0.92685 0.91512 0.96550 0.90334 1.20702 0.96627 0.92564 1.01151 1.19672 0.96437 0.96332 0.92674 1.20959 0.96709 0.93436 0.98953 1.21082 1.00381 0.96152 0.96444 1.20972 1.01808 0.99216 0.93101 1.20943 1.00616 0.94406 0.98401 1.20936 1.00932 0.96024 0.96361 1.60776 1.31377 1.36526 1.02029 1.19309 0.82761 0.91684 0.95865 0.95845 1.21410 0.98701 1.40743 0.94815 0.92596 1.24875 0.97359 0.95267 0.96188 1.69910 1.12603 1.41353 1.28441 0.86620 0.79500 0.77634 0.84702 1.19893 1.21136 1.21232 1.21485 1.00907 0.99641 0.92025 1.22078 1.00864 0.98980 0.99365 0.92254 0.92968 0.93745 0.93276 0.92767 0.88528 0.92542 0.93183 0.92535 0.92036 0.91457 0.86050 0.86879 0.87130 0.87073 0.87021 0.85483 0.93140 0.89791 0.94987 0.95937 0.91609 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.93 16 3 C -0.13 -2.24 3.70 -26.73 -0.10 -2.33 16 4 C -0.14 -2.15 4.67 -26.74 -0.12 -2.28 16 5 C 0.09 1.43 1.52 -67.71 -0.10 1.32 16 6 H 0.08 1.45 5.55 -51.93 -0.29 1.16 16 7 C -0.07 -1.03 5.03 -27.88 -0.14 -1.17 16 8 C -0.05 -0.77 3.64 -104.62 -0.38 -1.15 16 9 C -0.08 -1.28 9.31 -39.59 -0.37 -1.65 16 10 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 11 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 12 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 13 C -0.12 -1.79 8.44 -39.58 -0.33 -2.13 16 14 N -0.68 -13.04 5.28 -100.96 -0.53 -13.58 16 15 C 0.21 4.90 1.09 -68.86 -0.07 4.82 16 16 H 0.02 0.59 4.81 -51.93 -0.25 0.34 16 17 C -0.52 -13.38 8.03 -34.44 -0.28 -13.66 16 18 H 0.06 1.45 7.47 -52.49 -0.39 1.06 16 19 C 0.07 1.73 5.28 -17.82 -0.09 1.64 16 20 N -0.88 -24.53 11.30 55.43 0.63 -23.90 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.10 -2.46 5.46 -26.73 -0.15 -2.60 16 26 C -0.16 -3.29 9.00 37.16 0.33 -2.96 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 2.01 5.71 -51.93 -0.30 1.72 16 33 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 36 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.33 6.37 7.64 -39.29 -0.30 6.07 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.08 2.29 5.92 -51.93 -0.31 1.98 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 1.26 2.65 -51.93 -0.14 1.13 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -26.70 372.07 -10.79 -37.49 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.68 Total: 11.01 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -2.79 Total: -32.53 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.09 Total: -37.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.70 -10.79 -37.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258708019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.361 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds