Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 C 1.52993 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47059 * 174.63073 * 4 3 2 6 6 H 1.08996 * 109.47457 * 306.02832 * 5 4 3 7 7 C 1.53001 * 109.47136 * 186.02261 * 5 4 3 8 8 C 1.50708 * 109.46935 * 174.99976 * 7 5 4 9 9 C 1.38236 * 119.99808 * 90.00583 * 8 7 5 10 10 C 1.38227 * 120.00102 * 180.02562 * 9 8 7 11 11 C 1.38243 * 119.99885 * 359.95488 * 10 9 8 12 12 C 1.38226 * 119.99968 * 0.27703 * 11 10 9 13 13 C 1.38234 * 119.99977 * 270.02194 * 8 7 5 14 14 N 1.46897 * 109.47087 * 66.02652 * 5 4 3 15 15 C 1.46904 * 111.00121 * 273.52442 * 14 5 4 16 16 H 1.08996 * 109.47046 * 24.35618 * 15 14 5 17 17 C 1.50693 * 109.47410 * 144.36068 * 15 14 5 18 18 H 1.08000 * 120.00083 * 359.97438 * 17 15 14 19 19 C 1.37880 * 120.00321 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99421 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00189 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47446 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47156 * 119.99980 * 21 19 17 24 24 H 1.48502 * 109.46814 * 239.99765 * 21 19 17 25 25 C 1.53005 * 109.46851 * 264.35727 * 15 14 5 26 26 C 1.53003 * 109.46839 * 66.94206 * 25 15 14 27 27 H 1.08999 * 109.46629 * 300.00136 * 1 2 3 28 28 H 1.08994 * 109.46657 * 60.00092 * 1 2 3 29 29 H 1.09003 * 109.46744 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47510 * 240.00017 * 2 1 3 31 31 H 1.09000 * 109.47347 * 119.99405 * 2 1 3 32 32 H 1.08996 * 109.46855 * 59.99616 * 3 2 1 33 33 H 1.09003 * 109.46956 * 300.00083 * 3 2 1 34 34 H 1.09001 * 109.47366 * 54.63609 * 4 3 2 35 35 H 1.08999 * 109.47498 * 294.63436 * 4 3 2 36 36 H 1.09001 * 109.46901 * 55.00823 * 7 5 4 37 37 H 1.08997 * 109.47204 * 295.00227 * 7 5 4 38 38 H 1.08006 * 119.99972 * 359.97438 * 9 8 7 39 39 H 1.08003 * 120.00587 * 179.97438 * 10 9 8 40 40 H 1.07999 * 119.99616 * 180.02562 * 11 10 9 41 41 H 1.07997 * 120.00381 * 179.72717 * 12 11 10 42 42 H 1.07995 * 120.00438 * 0.02562 * 13 8 7 43 43 H 1.00904 * 111.00411 * 37.47518 * 14 5 4 44 44 H 0.97001 * 119.99544 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.46695 * 186.93762 * 25 15 14 46 46 H 1.08994 * 109.47659 * 306.94243 * 25 15 14 47 47 H 1.09002 * 109.47175 * 186.96952 * 26 25 15 48 48 H 1.08990 * 109.47539 * 306.97447 * 26 25 15 49 49 H 1.09005 * 109.47274 * 66.97776 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8787 -0.1343 6 1 3.6317 3.3425 -1.0129 7 6 5.6026 2.8672 -0.2846 8 6 6.0927 4.2692 -0.5403 9 6 6.4353 5.0859 0.5211 10 6 6.8843 6.3720 0.2867 11 6 6.9917 6.8412 -1.0092 12 6 6.6447 6.0262 -2.0703 13 6 6.1994 4.7386 -1.8361 14 7 3.7122 3.6437 1.0646 15 6 2.3641 4.2123 0.9332 16 1 1.7874 3.6198 0.2230 17 6 1.6786 4.1953 2.2751 18 1 2.1928 3.8010 3.1391 19 6 0.3946 4.6821 2.3997 20 7 -0.2320 5.1608 1.3472 21 14 -0.4552 4.6602 4.0629 22 1 0.4570 4.0737 5.0774 23 1 -0.8077 6.0479 4.4570 24 1 -1.6909 3.8412 3.9766 25 6 2.4655 5.6540 0.4307 26 6 3.0021 5.6580 -1.0022 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.8477 -0.8372 35 1 3.9330 1.0144 0.9350 36 1 5.8802 2.2270 -1.1220 37 1 6.0551 2.4852 0.6305 38 1 6.3513 4.7194 1.5336 39 1 7.1516 7.0103 1.1159 40 1 7.3430 7.8459 -1.1924 41 1 6.7244 6.3941 -3.0825 42 1 5.9312 4.1008 -2.6653 43 1 3.7847 3.0734 1.8938 44 1 -1.1352 5.5036 1.4349 45 1 1.4783 6.1158 0.4502 46 1 3.1425 6.2162 1.0737 47 1 3.1914 6.6844 -1.3164 48 1 3.9302 5.0881 -1.0442 49 1 2.2668 5.2043 -1.6668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258708019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -16.569313 kcal Electronic energy + Delta-G solvation = -24575.975048 eV Core-core repulsion = 21501.078256 eV Total energy + Delta-G solvation = -3074.896792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36683 -38.90458 -36.13114 -35.08396 -33.46042 -32.40356 -31.54903 -30.61944 -28.98133 -27.52440 -25.09812 -24.38183 -23.25402 -22.48153 -21.88871 -21.15793 -20.87593 -18.35284 -17.44616 -17.05139 -16.42941 -16.03760 -15.89735 -15.64427 -15.17262 -15.05782 -14.54974 -14.48418 -14.08305 -14.03891 -13.68216 -13.57887 -13.43274 -13.20764 -13.07988 -12.97872 -12.87784 -12.67751 -12.41256 -12.22836 -12.05343 -11.94779 -11.79959 -11.78267 -11.55880 -11.44865 -11.35241 -11.17055 -10.96127 -10.63468 -10.41284 -9.56549 -9.26982 -8.66306 -8.03899 -6.15447 0.69688 0.76099 1.37949 1.41774 1.50721 2.43973 3.10926 3.23354 3.78307 3.89787 4.13345 4.18094 4.21698 4.30009 4.34888 4.42544 4.50277 4.56794 4.61816 4.69226 4.70969 4.79805 4.84953 4.87430 4.94136 4.96574 5.03399 5.04421 5.09477 5.15239 5.16503 5.27940 5.34910 5.38311 5.41432 5.44042 5.47159 5.52597 5.62938 5.70123 5.76940 5.79557 5.83473 5.85217 6.03323 6.08547 6.36922 6.40746 6.66420 7.00534 7.22449 7.53903 8.99189 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.006051 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.477869 B = 4626.068637 C = 5967.912531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.123 4.123 4 C -0.133 4.133 5 C 0.089 3.911 6 H 0.060 0.940 7 C -0.065 4.065 8 C -0.064 4.064 9 C -0.101 4.101 10 C -0.136 4.136 11 C -0.139 4.139 12 C -0.131 4.131 13 C -0.134 4.134 14 N -0.672 5.672 15 C 0.224 3.776 16 H 0.006 0.994 17 C -0.525 4.525 18 H 0.052 0.948 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.284 1.284 25 C -0.096 4.096 26 C -0.145 4.145 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.327 0.673 44 H 0.257 0.743 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.028 0.972 48 H 0.087 0.913 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -5.681 -5.962 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.161 4.161 4 C -0.172 4.172 5 C -0.022 4.022 6 H 0.078 0.922 7 C -0.102 4.102 8 C -0.065 4.065 9 C -0.119 4.119 10 C -0.154 4.154 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.152 4.152 14 N -0.301 5.301 15 C 0.116 3.884 16 H 0.023 0.977 17 C -0.564 4.564 18 H 0.070 0.930 19 C -0.180 4.180 20 N -0.552 5.552 21 Si 0.770 3.230 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.211 1.211 25 C -0.135 4.135 26 C -0.202 4.202 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.047 0.953 48 H 0.105 0.895 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.817 -5.025 -6.218 14.267 hybrid contribution -1.706 -0.165 1.132 2.054 sum 10.111 -5.190 -5.086 12.451 Atomic orbital electron populations 1.21745 0.96652 1.01570 1.00827 1.21479 0.95350 0.96170 1.02099 1.21747 0.96322 0.96777 1.01245 1.22231 0.94820 0.97694 1.02413 1.21724 0.94432 0.91780 0.94259 0.92211 1.20647 0.94266 0.92793 1.02540 1.19816 0.96933 0.96723 0.92981 1.21056 0.97740 0.94191 0.98920 1.21325 1.00490 0.96158 0.97460 1.21289 1.01336 1.00296 0.92788 1.21289 0.99798 0.94223 0.99576 1.21203 1.00801 0.96660 0.96513 1.60679 1.28695 1.37474 1.03298 1.18995 0.84284 0.91068 0.94065 0.97693 1.21731 0.98928 1.39871 0.95831 0.92992 1.25536 0.98189 0.95328 0.98963 1.70037 1.12699 1.42379 1.30062 0.85740 0.78537 0.77326 0.81399 1.19249 1.21304 1.21059 1.21328 0.98638 0.99728 0.93762 1.21973 1.01442 0.99702 0.97052 0.94740 0.93696 0.91180 0.90979 0.91833 0.92598 0.94691 0.90477 0.91658 0.89605 0.90773 0.86789 0.85866 0.85049 0.84820 0.85484 0.85554 0.93402 0.93184 0.96523 0.95324 0.89494 0.95885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.91 71.98 0.71 -3.72 16 2 C -0.11 -3.19 5.93 30.60 0.18 -3.01 16 3 C -0.12 -4.25 3.70 30.59 0.11 -4.13 16 4 C -0.13 -3.80 4.67 30.59 0.14 -3.66 16 5 C 0.09 2.82 1.52 44.92 0.07 2.89 16 6 H 0.06 2.15 5.55 -2.39 -0.01 2.14 16 7 C -0.06 -1.69 5.03 29.85 0.15 -1.54 16 8 C -0.06 -1.84 3.64 -19.86 -0.07 -1.91 16 9 C -0.10 -3.05 9.31 22.27 0.21 -2.85 16 10 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 11 C -0.14 -3.59 10.05 22.27 0.22 -3.37 16 12 C -0.13 -3.30 10.05 22.27 0.22 -3.07 16 13 C -0.13 -3.54 8.44 22.27 0.19 -3.36 16 14 N -0.67 -25.91 5.28 -473.32 -2.50 -28.41 16 15 C 0.22 10.68 1.09 44.17 0.05 10.72 16 16 H 0.01 0.28 4.81 -2.39 -0.01 0.27 16 17 C -0.52 -27.80 8.03 25.60 0.21 -27.60 16 18 H 0.05 2.73 7.47 -2.91 -0.02 2.71 16 19 C 0.02 1.03 5.28 84.65 0.45 1.48 16 20 N -0.91 -52.28 11.30 21.45 0.24 -52.04 16 21 Si 0.94 43.74 29.54 68.60 2.03 45.77 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 C -0.10 -4.74 5.46 30.60 0.17 -4.57 16 26 C -0.14 -6.14 9.00 71.98 0.65 -5.49 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 2.39 5.71 -2.39 -0.01 2.37 16 33 H 0.03 1.32 7.69 -2.39 -0.02 1.30 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.79 8.01 -2.39 -0.02 1.77 16 36 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 37 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 38 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 39 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 41 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.33 12.71 7.64 -89.69 -0.68 12.03 16 44 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.05 2.83 5.92 -2.39 -0.01 2.81 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.09 3.29 2.65 -2.39 -0.01 3.29 16 49 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -58.83 372.07 3.87 -54.97 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.22 Total: 36.52 kcal Atomic # 6 Polarization: -60.69 SS G_CDS: 3.88 Total: -56.81 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.26 Total: -80.44 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -58.83 3.87 -54.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258708019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.398 kcal (2) G-P(sol) polarization free energy of solvation -58.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds