Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.53010 * 109.46874 * 175.05467 * 3 2 1 5 5 C 1.52998 * 109.46806 * 183.76886 * 4 3 2 6 6 H 1.09001 * 109.47508 * 53.88216 * 5 4 3 7 7 C 1.53002 * 109.47028 * 173.88273 * 5 4 3 8 8 C 1.50704 * 109.47303 * 184.99747 * 7 5 4 9 9 C 1.38229 * 119.99835 * 89.99624 * 8 7 5 10 10 C 1.38243 * 119.99947 * 180.25579 * 9 8 7 11 11 C 1.38230 * 119.99692 * 359.53340 * 10 9 8 12 12 C 1.38231 * 120.00020 * 0.42899 * 11 10 9 13 13 C 1.38236 * 119.99785 * 269.97908 * 8 7 5 14 14 N 1.46902 * 109.47180 * 293.88188 * 5 4 3 15 15 C 1.46894 * 111.00110 * 149.63315 * 14 5 4 16 16 H 1.09004 * 109.47464 * 19.02981 * 15 14 5 17 17 C 1.50707 * 109.47328 * 139.02725 * 15 14 5 18 18 H 1.08003 * 119.99568 * 359.97438 * 17 15 14 19 19 C 1.37875 * 120.00405 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99587 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00191 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47275 * 89.99902 * 21 19 17 23 23 H 1.48496 * 109.47231 * 210.00065 * 21 19 17 24 24 H 1.48502 * 109.47465 * 330.00018 * 21 19 17 25 25 C 1.52994 * 109.47335 * 259.02423 * 15 14 5 26 26 C 1.53001 * 109.46874 * 66.75083 * 25 15 14 27 27 H 1.08995 * 109.47075 * 184.96736 * 1 2 3 28 28 H 1.09006 * 109.47043 * 304.97200 * 1 2 3 29 29 H 1.08996 * 109.47063 * 64.96844 * 1 2 3 30 30 H 1.08997 * 109.47429 * 240.00012 * 2 1 3 31 31 H 1.09004 * 109.47285 * 120.00072 * 2 1 3 32 32 H 1.09005 * 109.47132 * 55.06077 * 3 2 1 33 33 H 1.08998 * 109.47217 * 295.05192 * 3 2 1 34 34 H 1.08996 * 109.47079 * 63.76945 * 4 3 2 35 35 H 1.08997 * 109.47349 * 303.76701 * 4 3 2 36 36 H 1.09002 * 109.47148 * 64.99839 * 7 5 4 37 37 H 1.08996 * 109.47017 * 304.99711 * 7 5 4 38 38 H 1.08002 * 120.00391 * 359.97438 * 9 8 7 39 39 H 1.08000 * 119.99931 * 179.73255 * 10 9 8 40 40 H 1.08005 * 119.99811 * 180.21132 * 11 10 9 41 41 H 1.08008 * 120.00194 * 179.78655 * 12 11 10 42 42 H 1.07994 * 120.00063 * 359.97438 * 13 8 7 43 43 H 1.00902 * 111.00018 * 25.67565 * 14 5 4 44 44 H 0.97003 * 119.99616 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47629 * 186.74747 * 25 15 14 46 46 H 1.09000 * 109.47445 * 306.75060 * 25 15 14 47 47 H 1.09004 * 109.47394 * 174.45723 * 26 25 15 48 48 H 1.09000 * 109.47128 * 294.45791 * 26 25 15 49 49 H 1.08999 * 109.47395 * 54.45984 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 0.1244 5 6 4.0672 2.8864 0.2189 6 1 3.5491 3.3992 1.0292 7 6 5.5720 2.8852 0.4958 8 6 6.0444 4.3001 0.7107 9 6 6.0450 4.8429 1.9819 10 6 6.4733 6.1426 2.1783 11 6 6.9101 6.8960 1.1048 12 6 6.9101 6.3528 -0.1663 13 6 6.4773 5.0548 -0.3635 14 7 3.8031 3.5810 -1.0483 15 6 3.5763 5.0150 -0.8252 16 1 3.9777 5.2995 0.1475 17 6 4.2678 5.8070 -1.9050 18 1 4.8208 5.2960 -2.6793 19 6 4.1953 7.1838 -1.9039 20 7 3.5231 7.8061 -0.9602 21 14 5.0529 8.1654 -3.2419 22 1 4.1232 8.3652 -4.3824 23 1 5.4637 9.4859 -2.7009 24 1 6.2538 7.4254 -3.7061 25 6 2.0747 5.3057 -0.8620 26 6 1.3962 4.6365 0.3350 27 1 -0.3633 -1.0238 0.0890 28 1 -0.3633 0.5891 0.8422 29 1 -0.3633 0.4348 -0.9311 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6062 1.9813 0.8425 33 1 1.7508 1.9301 -0.9310 34 1 4.0015 0.9642 -0.7514 35 1 3.8571 0.8983 1.0214 36 1 6.0977 2.4519 -0.3551 37 1 5.7766 2.2943 1.3886 38 1 5.7066 4.2533 2.8212 39 1 6.4698 6.5682 3.1709 40 1 7.2479 7.9102 1.2587 41 1 7.2481 6.9426 -1.0057 42 1 6.4775 4.6304 -1.3565 43 1 3.0239 3.1629 -1.5342 44 1 3.4718 8.7748 -0.9596 45 1 1.9117 6.3825 -0.8167 46 1 1.6510 4.9128 -1.7862 47 1 0.3452 4.9237 0.3644 48 1 1.4743 3.5536 0.2382 49 1 1.8858 4.9553 1.2552 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258708021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -11.091590 kcal Electronic energy + Delta-G solvation = -24929.438617 eV Core-core repulsion = 21854.779357 eV Total energy + Delta-G solvation = -3074.659260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40727 -38.65722 -36.36393 -34.96722 -33.50684 -32.10119 -31.49381 -30.79063 -28.64111 -27.58723 -25.09733 -24.42079 -23.15187 -22.38075 -21.65386 -21.40337 -20.85778 -18.12043 -17.41884 -16.96300 -16.47592 -16.16993 -15.84973 -15.52551 -15.28497 -14.90256 -14.60376 -14.56965 -14.01685 -13.84208 -13.75748 -13.57869 -13.39060 -13.30100 -13.04821 -12.90479 -12.70154 -12.51629 -12.48008 -12.19497 -12.08567 -11.83524 -11.75156 -11.67050 -11.57030 -11.46546 -11.28704 -11.25495 -10.97983 -10.70210 -10.26771 -9.38506 -9.15652 -8.64677 -7.90160 -5.91605 0.81325 0.91509 1.38717 1.43499 1.48940 2.51406 3.20571 3.42959 3.82346 3.89861 4.11748 4.19610 4.27398 4.28695 4.38600 4.49797 4.50645 4.55765 4.60674 4.65944 4.69053 4.76597 4.82027 4.88610 4.91732 4.95566 5.06911 5.10254 5.13841 5.19763 5.21713 5.25686 5.29527 5.34965 5.42153 5.50278 5.52883 5.53604 5.55235 5.62040 5.75044 5.85789 5.90979 5.99868 6.04512 6.14809 6.50413 6.54332 6.92869 7.12019 7.17939 7.72333 9.13469 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.006316 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.187937 B = 4432.146627 C = 5474.220702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.113 4.113 5 C 0.094 3.906 6 H 0.025 0.975 7 C -0.061 4.061 8 C -0.086 4.086 9 C -0.134 4.134 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.119 4.119 13 C -0.054 4.054 14 N -0.679 5.679 15 C 0.233 3.767 16 H 0.018 0.982 17 C -0.470 4.470 18 H 0.044 0.956 19 C 0.032 3.968 20 N -0.911 5.911 21 Si 0.914 3.086 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.269 1.269 25 C -0.145 4.145 26 C -0.151 4.151 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.326 0.674 44 H 0.250 0.750 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.040 0.960 48 H 0.076 0.924 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -12.842 5.595 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.161 4.161 4 C -0.151 4.151 5 C -0.016 4.016 6 H 0.043 0.957 7 C -0.099 4.099 8 C -0.086 4.086 9 C -0.152 4.152 10 C -0.158 4.158 11 C -0.157 4.157 12 C -0.137 4.137 13 C -0.072 4.072 14 N -0.311 5.311 15 C 0.124 3.876 16 H 0.036 0.964 17 C -0.509 4.509 18 H 0.063 0.937 19 C -0.166 4.166 20 N -0.552 5.552 21 Si 0.743 3.257 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.194 1.194 25 C -0.184 4.184 26 C -0.208 4.208 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.635 -12.589 5.490 13.748 hybrid contribution -0.670 1.657 -0.671 1.909 sum -0.035 -10.932 4.819 11.947 Atomic orbital electron populations 1.21792 0.95894 1.01918 1.01524 1.21484 0.95829 0.95746 1.02404 1.21781 0.95618 0.97495 1.01183 1.21758 0.95232 0.95025 1.03037 1.21561 0.94433 0.94143 0.91457 0.95663 1.20647 0.95725 0.91820 1.01726 1.19885 0.98564 0.97334 0.92792 1.21098 1.01333 0.95856 0.96876 1.21100 1.00954 0.94926 0.98771 1.21069 1.01759 0.99436 0.93391 1.20891 1.00760 0.95876 0.96188 1.20772 0.94912 0.93686 0.97801 1.60720 1.46081 1.03830 1.20466 1.19000 0.89607 0.83599 0.95371 0.96432 1.21246 1.29265 0.90264 1.10089 0.93732 1.25190 0.96361 0.98478 0.96556 1.69979 1.43249 1.07833 1.34164 0.86246 0.79658 0.78814 0.81013 1.21390 1.21903 1.19378 1.22102 0.99364 1.01898 0.95063 1.22064 0.98891 1.01832 0.97994 0.91791 0.93110 0.93295 0.91705 0.91280 0.92429 0.92970 0.91085 0.90141 0.91178 0.89849 0.85364 0.85353 0.86826 0.88893 0.87565 0.85573 0.94017 0.92080 0.95531 0.94091 0.90530 0.95297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.16 5.93 30.59 0.18 -1.97 16 3 C -0.12 -2.85 3.58 30.60 0.11 -2.74 16 4 C -0.11 -2.68 4.75 30.60 0.15 -2.54 16 5 C 0.09 2.97 1.57 44.92 0.07 3.04 16 6 H 0.03 0.90 6.25 -2.39 -0.01 0.88 16 7 C -0.06 -1.88 5.03 29.85 0.15 -1.73 16 8 C -0.09 -3.16 3.42 -19.87 -0.07 -3.23 16 9 C -0.13 -4.69 9.66 22.27 0.22 -4.48 16 10 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 11 C -0.14 -5.46 10.05 22.27 0.22 -5.23 16 12 C -0.12 -5.07 9.40 22.27 0.21 -4.86 16 13 C -0.05 -2.23 6.01 22.27 0.13 -2.09 16 14 N -0.68 -25.84 5.70 -473.31 -2.70 -28.54 16 15 C 0.23 10.75 0.96 44.17 0.04 10.79 16 16 H 0.02 0.93 5.58 -2.38 -0.01 0.92 16 17 C -0.47 -24.24 5.83 25.60 0.15 -24.09 16 18 H 0.04 2.38 7.49 -2.91 -0.02 2.36 16 19 C 0.03 1.72 4.96 84.65 0.42 2.14 16 20 N -0.91 -51.35 11.30 21.45 0.24 -51.11 16 21 Si 0.91 43.71 29.54 68.60 2.03 45.73 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.14 -6.67 5.11 30.59 0.16 -6.51 16 26 C -0.15 -5.76 8.69 71.98 0.63 -5.13 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.42 6.59 -2.38 -0.02 1.41 16 33 H 0.05 1.36 6.23 -2.39 -0.01 1.34 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.16 8.09 -2.39 -0.02 2.14 16 37 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 38 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 39 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.09 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.11 4.68 7.25 -2.91 -0.02 4.66 16 43 H 0.33 11.90 5.95 -89.69 -0.53 11.37 16 44 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.06 3.29 5.92 -2.39 -0.01 3.27 16 46 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.08 2.50 3.05 -2.39 -0.01 2.50 16 49 H 0.03 1.15 7.98 -2.39 -0.02 1.13 16 Total: -1.00 -57.58 364.88 3.64 -53.94 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.37 Total: 35.41 kcal Atomic # 6 Polarization: -59.13 SS G_CDS: 3.70 Total: -55.43 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -2.46 Total: -79.65 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -57.58 3.64 -53.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258708021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.848 kcal (2) G-P(sol) polarization free energy of solvation -57.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds