Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 C 1.52997 * 109.46625 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46630 * 173.77274 * 4 3 2 6 6 H 1.09007 * 109.47144 * 301.48333 * 5 4 3 7 7 C 1.53004 * 109.47112 * 181.48634 * 5 4 3 8 8 C 1.50701 * 109.47052 * 173.87091 * 7 5 4 9 9 C 1.38233 * 119.99919 * 275.41112 * 8 7 5 10 10 C 1.38236 * 119.99949 * 179.76864 * 9 8 7 11 11 C 1.38227 * 120.00057 * 0.50646 * 10 9 8 12 12 C 1.38234 * 119.99990 * 359.74765 * 11 10 9 13 13 C 1.38232 * 120.00099 * 95.69008 * 8 7 5 14 14 N 1.46899 * 109.47432 * 61.48339 * 5 4 3 15 15 C 1.46899 * 110.99655 * 34.95970 * 14 5 4 16 16 C 1.52994 * 109.47127 * 72.79532 * 15 14 5 17 17 C 1.46902 * 110.99871 * 271.01062 * 14 5 4 18 18 C 1.50704 * 109.46917 * 193.41207 * 17 14 5 19 19 H 1.08000 * 119.99736 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99959 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00228 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47235 * 89.99510 * 22 20 18 24 24 H 1.48496 * 109.47262 * 209.99686 * 22 20 18 25 25 H 1.48506 * 109.47060 * 330.00126 * 22 20 18 26 26 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47325 * 300.00255 * 1 2 3 28 28 H 1.09010 * 109.47177 * 60.00093 * 1 2 3 29 29 H 1.08999 * 109.46851 * 239.99983 * 2 1 3 30 30 H 1.09002 * 109.46867 * 119.99970 * 2 1 3 31 31 H 1.09003 * 109.46785 * 59.99701 * 3 2 1 32 32 H 1.08996 * 109.46991 * 300.00124 * 3 2 1 33 33 H 1.09003 * 109.47270 * 53.77596 * 4 3 2 34 34 H 1.08999 * 109.47276 * 293.76866 * 4 3 2 35 35 H 1.09001 * 109.46463 * 293.86870 * 7 5 4 36 36 H 1.08997 * 109.46958 * 53.86817 * 7 5 4 37 37 H 1.08000 * 120.00140 * 359.97438 * 9 8 7 38 38 H 1.08002 * 119.99887 * 180.23517 * 10 9 8 39 39 H 1.07996 * 120.00145 * 179.72363 * 11 10 9 40 40 H 1.08002 * 120.00299 * 179.97438 * 12 11 10 41 41 H 1.07997 * 120.00109 * 359.97438 * 13 8 7 42 42 H 1.09002 * 109.46715 * 192.79290 * 15 14 5 43 43 H 1.08996 * 109.47312 * 312.78910 * 15 14 5 44 44 H 1.09003 * 109.47301 * 284.46418 * 16 15 14 45 45 H 1.09001 * 109.47293 * 44.46233 * 16 15 14 46 46 H 1.09004 * 109.47307 * 164.46551 * 16 15 14 47 47 H 1.09004 * 109.46808 * 313.40279 * 17 14 5 48 48 H 1.08993 * 109.47438 * 73.41029 * 17 14 5 49 49 H 0.97006 * 120.00323 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8764 -0.1558 6 1 3.6955 3.2996 -1.0839 7 6 5.6097 2.8725 -0.1924 8 6 6.1084 4.2617 -0.4966 9 6 6.2021 4.6908 -1.8073 10 6 6.6551 5.9667 -2.0861 11 6 7.0242 6.8098 -1.0549 12 6 6.9355 6.3789 0.2556 13 6 6.4776 5.1048 0.5347 14 7 3.6195 3.6867 0.9796 15 6 3.5832 2.8908 2.2138 16 6 5.0119 2.6344 2.6974 17 6 2.3075 4.2859 0.7009 18 6 2.0167 5.3556 1.7217 19 1 2.7346 5.5687 2.5000 20 6 0.8339 6.0615 1.6628 21 7 -0.0404 5.8017 0.7154 22 14 0.4731 7.3871 2.9286 23 1 0.9875 8.6915 2.4397 24 1 -0.9934 7.4818 3.1419 25 1 1.1385 7.0416 4.2105 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.8350 -0.8282 34 1 3.9329 1.0283 0.9413 35 1 5.9953 2.5518 0.7753 36 1 5.9528 2.1857 -0.9661 37 1 5.9183 4.0303 -2.6134 38 1 6.7247 6.3033 -3.1100 39 1 7.3823 7.8051 -1.2729 40 1 7.2243 7.0375 1.0614 41 1 6.4083 4.7681 1.5585 42 1 3.0321 3.4350 2.9809 43 1 3.0895 1.9390 2.0180 44 1 5.4748 1.8695 2.0739 45 1 5.5893 3.5564 2.6301 46 1 4.9895 2.2945 3.7329 47 1 2.3140 4.7271 -0.2959 48 1 1.5380 3.5157 0.7524 49 1 -0.8725 6.2985 0.6736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258711070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = 19.038053 kcal Electronic energy + Delta-G solvation = -24442.256196 eV Core-core repulsion = 21368.903455 eV Total energy + Delta-G solvation = -3073.352741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.40734 -38.09862 -34.49401 -33.18267 -32.13645 -30.66526 -30.29298 -29.76967 -27.73023 -25.92046 -23.84858 -22.55016 -22.10926 -21.80367 -20.58025 -20.35856 -18.82418 -16.58796 -16.37452 -15.83136 -15.02773 -14.80686 -14.51255 -14.23076 -13.99045 -13.82092 -13.45659 -12.98584 -12.81645 -12.59095 -12.42344 -12.21988 -12.07959 -11.89431 -11.86251 -11.75198 -11.23265 -11.07842 -10.95672 -10.82449 -10.69870 -10.59470 -10.49954 -10.36184 -10.17762 -10.06499 -9.97644 -9.71846 -9.62776 -9.10454 -8.42803 -8.35543 -8.13774 -6.97094 -5.95518 -3.95034 1.85547 1.91018 3.34860 3.40997 3.44080 4.26588 4.47394 4.92116 5.08555 5.26120 5.29614 5.31731 5.39949 5.40812 5.43172 5.51203 5.56197 5.68619 5.77631 5.80051 5.81797 5.95478 6.00287 6.02528 6.07549 6.12186 6.14722 6.19690 6.25985 6.30574 6.31646 6.35718 6.45873 6.48699 6.57528 6.61764 6.71929 6.79706 6.82351 6.91683 6.92141 7.01802 7.19800 7.42629 7.50459 7.53011 7.90306 8.22744 8.36020 8.67644 9.12781 9.68074 11.14640 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.007309 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.547585 B = 3829.788106 C = 5804.245743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.131 4.131 4 C -0.146 4.146 5 C 0.089 3.911 6 H 0.069 0.931 7 C -0.085 4.085 8 C -0.051 4.051 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.089 4.089 14 N -0.519 5.519 15 C 0.041 3.959 16 C -0.152 4.152 17 C 0.187 3.813 18 C -0.499 4.499 19 H 0.060 0.940 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.892 3.108 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.275 1.275 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.023 0.977 48 H 0.008 0.992 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.625 -8.019 -2.418 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.185 4.185 5 C -0.021 4.021 6 H 0.088 0.912 7 C -0.123 4.123 8 C -0.051 4.051 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.152 4.152 12 C -0.139 4.139 13 C -0.107 4.107 14 N -0.243 5.243 15 C -0.087 4.087 16 C -0.209 4.209 17 C 0.062 3.938 18 C -0.538 4.538 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.720 3.280 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.200 1.200 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.025 0.975 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.770 -7.568 -2.413 13.382 hybrid contribution -1.057 0.331 0.395 1.176 sum 9.713 -7.237 -2.018 12.280 Atomic orbital electron populations 1.21759 0.96112 1.00662 1.02352 1.21515 0.95756 0.97552 1.00903 1.22016 0.95047 0.95903 1.03833 1.22265 0.96178 0.98506 1.01576 1.21684 0.93066 0.91215 0.96137 0.91243 1.21037 0.96122 0.92788 1.02327 1.19689 0.96308 0.96359 0.92711 1.20949 1.00933 0.96266 0.96205 1.20964 1.00439 0.94343 0.98562 1.20976 1.01810 0.99177 0.93188 1.21080 1.00311 0.96283 0.96274 1.21020 0.97128 0.93487 0.99040 1.62279 1.31495 1.30170 1.00362 1.22195 0.95644 0.96652 0.94194 1.22144 0.98436 1.01181 0.99159 1.19966 0.83217 0.93700 0.96926 1.21184 1.02063 1.18034 1.12519 0.92162 1.24943 0.96337 0.97396 0.95904 1.69954 1.09258 1.41698 1.33000 0.86598 0.77093 0.82396 0.81895 1.20818 1.21486 1.19986 0.93506 0.92508 0.92758 0.92889 0.92714 0.89674 0.92046 0.92860 0.91339 0.89772 0.92174 0.86982 0.87011 0.87057 0.86837 0.86099 0.90414 0.94393 0.93222 0.91918 0.93787 0.95893 0.97485 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.80 16 3 C -0.13 -2.15 3.42 -26.73 -0.09 -2.24 16 4 C -0.15 -2.19 4.13 -26.73 -0.11 -2.30 16 5 C 0.09 1.50 1.90 -67.71 -0.13 1.38 16 6 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 7 C -0.09 -1.25 4.72 -27.88 -0.13 -1.38 16 8 C -0.05 -0.81 4.90 -104.63 -0.51 -1.32 16 9 C -0.13 -1.93 9.72 -39.58 -0.38 -2.31 16 10 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 11 C -0.13 -1.98 10.05 -39.59 -0.40 -2.37 16 12 C -0.12 -1.89 10.05 -39.58 -0.40 -2.28 16 13 C -0.09 -1.45 9.60 -39.58 -0.38 -1.83 16 14 N -0.52 -10.34 4.00 -228.08 -0.91 -11.25 16 15 C 0.04 0.75 4.65 -3.83 -0.02 0.73 16 16 C -0.15 -2.24 8.35 37.15 0.31 -1.93 16 17 C 0.19 4.65 4.14 -4.97 -0.02 4.63 16 18 C -0.50 -13.79 8.32 -34.44 -0.29 -14.07 16 19 H 0.06 1.67 7.50 -52.49 -0.39 1.28 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.64 4.24 -51.93 -0.22 1.42 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.99 5.20 -51.93 -0.27 0.72 16 35 H 0.08 1.18 4.15 -51.93 -0.22 0.96 16 36 H 0.06 0.78 8.12 -51.93 -0.42 0.35 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.12 1.93 5.84 -52.49 -0.31 1.62 16 42 H 0.08 1.61 6.85 -51.93 -0.36 1.26 16 43 H 0.04 0.66 4.05 -51.93 -0.21 0.45 16 44 H 0.05 0.66 5.21 -51.93 -0.27 0.39 16 45 H 0.06 0.96 5.86 -51.93 -0.30 0.66 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.02 0.64 7.69 -51.93 -0.40 0.24 16 48 H 0.01 0.20 4.91 -51.93 -0.26 -0.06 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -29.06 366.26 -10.73 -39.79 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.22 Total: 4.54 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -2.83 Total: -29.62 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.18 Total: -37.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.06 -10.73 -39.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258711070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.828 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds