Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 C 1.52997 * 109.46625 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46630 * 173.77274 * 4 3 2 6 6 H 1.09007 * 109.47144 * 301.48333 * 5 4 3 7 7 C 1.53004 * 109.47112 * 181.48634 * 5 4 3 8 8 C 1.50701 * 109.47052 * 173.87091 * 7 5 4 9 9 C 1.38233 * 119.99919 * 275.41112 * 8 7 5 10 10 C 1.38236 * 119.99949 * 179.76864 * 9 8 7 11 11 C 1.38227 * 120.00057 * 0.50646 * 10 9 8 12 12 C 1.38234 * 119.99990 * 359.74765 * 11 10 9 13 13 C 1.38232 * 120.00099 * 95.69008 * 8 7 5 14 14 N 1.46899 * 109.47432 * 61.48339 * 5 4 3 15 15 C 1.46899 * 110.99655 * 34.95970 * 14 5 4 16 16 C 1.52994 * 109.47127 * 72.79532 * 15 14 5 17 17 C 1.46902 * 110.99871 * 271.01062 * 14 5 4 18 18 C 1.50704 * 109.46917 * 193.41207 * 17 14 5 19 19 H 1.08000 * 119.99736 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99959 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00228 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47235 * 89.99510 * 22 20 18 24 24 H 1.48496 * 109.47262 * 209.99686 * 22 20 18 25 25 H 1.48506 * 109.47060 * 330.00126 * 22 20 18 26 26 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47325 * 300.00255 * 1 2 3 28 28 H 1.09010 * 109.47177 * 60.00093 * 1 2 3 29 29 H 1.08999 * 109.46851 * 239.99983 * 2 1 3 30 30 H 1.09002 * 109.46867 * 119.99970 * 2 1 3 31 31 H 1.09003 * 109.46785 * 59.99701 * 3 2 1 32 32 H 1.08996 * 109.46991 * 300.00124 * 3 2 1 33 33 H 1.09003 * 109.47270 * 53.77596 * 4 3 2 34 34 H 1.08999 * 109.47276 * 293.76866 * 4 3 2 35 35 H 1.09001 * 109.46463 * 293.86870 * 7 5 4 36 36 H 1.08997 * 109.46958 * 53.86817 * 7 5 4 37 37 H 1.08000 * 120.00140 * 359.97438 * 9 8 7 38 38 H 1.08002 * 119.99887 * 180.23517 * 10 9 8 39 39 H 1.07996 * 120.00145 * 179.72363 * 11 10 9 40 40 H 1.08002 * 120.00299 * 179.97438 * 12 11 10 41 41 H 1.07997 * 120.00109 * 359.97438 * 13 8 7 42 42 H 1.09002 * 109.46715 * 192.79290 * 15 14 5 43 43 H 1.08996 * 109.47312 * 312.78910 * 15 14 5 44 44 H 1.09003 * 109.47301 * 284.46418 * 16 15 14 45 45 H 1.09001 * 109.47293 * 44.46233 * 16 15 14 46 46 H 1.09004 * 109.47307 * 164.46551 * 16 15 14 47 47 H 1.09004 * 109.46808 * 313.40279 * 17 14 5 48 48 H 1.08993 * 109.47438 * 73.41029 * 17 14 5 49 49 H 0.97006 * 120.00323 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8764 -0.1558 6 1 3.6955 3.2996 -1.0839 7 6 5.6097 2.8725 -0.1924 8 6 6.1084 4.2617 -0.4966 9 6 6.2021 4.6908 -1.8073 10 6 6.6551 5.9667 -2.0861 11 6 7.0242 6.8098 -1.0549 12 6 6.9355 6.3789 0.2556 13 6 6.4776 5.1048 0.5347 14 7 3.6195 3.6867 0.9796 15 6 3.5832 2.8908 2.2138 16 6 5.0119 2.6344 2.6974 17 6 2.3075 4.2859 0.7009 18 6 2.0167 5.3556 1.7217 19 1 2.7346 5.5687 2.5000 20 6 0.8339 6.0615 1.6628 21 7 -0.0404 5.8017 0.7154 22 14 0.4731 7.3871 2.9286 23 1 0.9875 8.6915 2.4397 24 1 -0.9934 7.4818 3.1419 25 1 1.1385 7.0416 4.2105 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.8350 -0.8282 34 1 3.9329 1.0283 0.9413 35 1 5.9953 2.5518 0.7753 36 1 5.9528 2.1857 -0.9661 37 1 5.9183 4.0303 -2.6134 38 1 6.7247 6.3033 -3.1100 39 1 7.3823 7.8051 -1.2729 40 1 7.2243 7.0375 1.0614 41 1 6.4083 4.7681 1.5585 42 1 3.0321 3.4350 2.9809 43 1 3.0895 1.9390 2.0180 44 1 5.4748 1.8695 2.0739 45 1 5.5893 3.5564 2.6301 46 1 4.9895 2.2945 3.7329 47 1 2.3140 4.7271 -0.2959 48 1 1.5380 3.5157 0.7524 49 1 -0.8725 6.2985 0.6736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258711070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = 5.182614 kcal Electronic energy + Delta-G solvation = -24442.857013 eV Core-core repulsion = 21368.903455 eV Total energy + Delta-G solvation = -3073.953558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74867 -39.38427 -35.80528 -35.02372 -33.68647 -31.93605 -31.48970 -31.34013 -29.04550 -27.76567 -25.15901 -24.15978 -23.42068 -23.14011 -21.95179 -21.60512 -20.25141 -18.46306 -17.67912 -17.35357 -16.68884 -16.19938 -15.91864 -15.52353 -15.37505 -15.29615 -14.72533 -14.21866 -14.20122 -14.07247 -13.81914 -13.68059 -13.39285 -13.38584 -13.19096 -13.03529 -12.83807 -12.79238 -12.34092 -12.29398 -12.25176 -12.00643 -11.82608 -11.76753 -11.66600 -11.43723 -11.38661 -11.31226 -11.11000 -10.90471 -10.54175 -9.61871 -9.34824 -8.61599 -8.13227 -6.21448 0.66688 0.71967 1.37838 1.38991 1.49298 2.41177 3.06759 3.17488 3.44506 3.82252 4.04335 4.10831 4.14857 4.22781 4.29491 4.32436 4.36971 4.41561 4.53719 4.57989 4.59154 4.69267 4.76431 4.81006 4.85919 4.89566 4.96239 4.99261 5.02738 5.05327 5.11781 5.13929 5.20684 5.25908 5.29211 5.34655 5.38821 5.41697 5.45801 5.53449 5.60767 5.65136 5.74285 5.75242 5.82114 5.99079 6.19849 6.34501 6.58232 6.87430 6.97846 7.46783 8.95336 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.007309 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.547585 B = 3829.788106 C = 5804.245743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.138 4.138 5 C 0.089 3.911 6 H 0.041 0.959 7 C -0.076 4.076 8 C -0.067 4.067 9 C -0.139 4.139 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.137 4.137 13 C -0.108 4.108 14 N -0.521 5.521 15 C 0.043 3.957 16 C -0.142 4.142 17 C 0.207 3.793 18 C -0.510 4.510 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.933 5.933 22 Si 0.957 3.043 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.265 1.265 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.062 0.938 47 H -0.019 1.019 48 H -0.008 1.008 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 -9.216 -2.016 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.164 4.164 4 C -0.176 4.176 5 C -0.020 4.020 6 H 0.059 0.941 7 C -0.113 4.113 8 C -0.067 4.067 9 C -0.157 4.157 10 C -0.152 4.152 11 C -0.160 4.160 12 C -0.155 4.155 13 C -0.126 4.126 14 N -0.245 5.245 15 C -0.085 4.085 16 C -0.199 4.199 17 C 0.081 3.919 18 C -0.549 4.549 19 H 0.073 0.927 20 C -0.195 4.195 21 N -0.575 5.575 22 Si 0.782 3.218 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.190 1.190 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.081 0.919 47 H -0.001 1.001 48 H 0.010 0.990 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.431 -8.778 -2.003 15.349 hybrid contribution -1.567 0.712 0.218 1.735 sum 10.864 -8.066 -1.785 13.648 Atomic orbital electron populations 1.21769 0.96443 1.01861 1.00901 1.21478 0.95480 0.95532 1.02534 1.21887 0.96409 0.97332 1.00736 1.22195 0.94713 0.97318 1.03372 1.21709 0.94837 0.91874 0.93596 0.94090 1.20991 0.93637 0.92840 1.03847 1.19919 0.96679 0.97096 0.93035 1.21246 1.00949 0.97019 0.96509 1.21326 0.99795 0.94185 0.99846 1.21319 1.01443 1.00277 0.92954 1.21375 1.00413 0.96421 0.97281 1.21184 0.97986 0.94187 0.99227 1.62205 1.28182 1.31910 1.02191 1.22202 0.97909 0.96053 0.92375 1.22052 0.95587 1.01660 1.00616 1.19528 0.85590 0.92891 0.93872 1.21500 1.01993 1.18639 1.12741 0.92667 1.25777 0.96244 0.99677 0.97845 1.70085 1.09699 1.42930 1.34751 0.85572 0.77078 0.79426 0.79686 1.20469 1.20918 1.18954 0.90912 0.94382 0.93867 0.90860 0.91236 0.93162 0.94846 0.90132 0.89897 0.88685 0.89621 0.85619 0.84779 0.84842 0.85483 0.86185 0.93737 0.93567 0.90974 0.92525 0.91908 1.00113 0.99020 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.91 71.98 0.71 -3.40 16 2 C -0.11 -2.93 5.93 30.60 0.18 -2.75 16 3 C -0.13 -4.20 3.42 30.59 0.10 -4.09 16 4 C -0.14 -3.89 4.13 30.59 0.13 -3.76 16 5 C 0.09 3.01 1.90 44.92 0.09 3.09 16 6 H 0.04 1.61 7.52 -2.38 -0.02 1.60 16 7 C -0.08 -2.09 4.72 29.85 0.14 -1.95 16 8 C -0.07 -2.11 4.90 -19.87 -0.10 -2.20 16 9 C -0.14 -4.17 9.72 22.27 0.22 -3.95 16 10 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 11 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 12 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 13 C -0.11 -3.49 9.60 22.27 0.21 -3.28 16 14 N -0.52 -21.25 4.00 -875.51 -3.50 -24.75 16 15 C 0.04 1.54 4.65 86.30 0.40 1.94 16 16 C -0.14 -3.90 8.35 71.98 0.60 -3.30 16 17 C 0.21 10.91 4.14 85.56 0.35 11.26 16 18 C -0.51 -29.23 8.32 25.60 0.21 -29.02 16 19 H 0.06 3.15 7.50 -2.91 -0.02 3.13 16 20 C 0.00 0.11 5.46 84.65 0.46 0.57 16 21 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 22 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.05 2.03 4.24 -2.39 -0.01 2.02 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.14 5.20 -2.39 -0.01 2.13 16 35 H 0.10 2.40 4.15 -2.39 -0.01 2.39 16 36 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 37 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 38 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 41 H 0.12 3.78 5.84 -2.91 -0.02 3.77 16 42 H 0.04 1.89 6.85 -2.39 -0.02 1.88 16 43 H 0.05 1.59 4.05 -2.39 -0.01 1.58 16 44 H 0.07 1.66 5.21 -2.39 -0.01 1.65 16 45 H 0.06 1.65 5.86 -2.39 -0.01 1.63 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H -0.02 -1.16 7.69 -2.38 -0.02 -1.18 16 48 H -0.01 -0.42 4.91 -2.39 -0.01 -0.44 16 49 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -65.68 366.26 4.11 -61.57 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.91 Total: 24.57 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 4.39 Total: -52.18 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -3.22 Total: -81.64 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -65.68 4.11 -61.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258711070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.755 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds