Wall clock time and date at job start Tue Mar 31 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 C 1.53001 * 109.46679 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46679 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47602 * 306.55215 * 5 4 3 7 7 C 1.53002 * 109.47014 * 186.54979 * 5 4 3 8 8 C 1.52998 * 109.47333 * 174.39815 * 7 5 4 9 9 C 1.52999 * 109.47525 * 180.02562 * 8 7 5 10 10 N 1.46503 * 109.47232 * 66.55473 * 5 4 3 11 11 C 1.36931 * 120.00161 * 53.31605 * 10 5 4 12 12 H 1.07999 * 119.99945 * 323.63865 * 11 10 5 13 13 C 1.38805 * 120.00197 * 143.64113 * 11 10 5 14 14 N 1.31621 * 120.00324 * 169.04335 * 13 11 10 15 15 Si 1.86800 * 119.99960 * 349.04449 * 13 11 10 16 16 H 1.48507 * 109.47169 * 95.62824 * 15 13 11 17 17 H 1.48499 * 109.47419 * 215.62730 * 15 13 11 18 18 H 1.48500 * 109.47102 * 335.62946 * 15 13 11 19 19 C 1.46495 * 119.99787 * 233.31992 * 10 5 4 20 20 C 1.50699 * 109.47281 * 84.73477 * 19 10 5 21 21 C 1.38234 * 120.00049 * 269.72435 * 20 19 10 22 22 C 1.38243 * 120.00111 * 179.76446 * 21 20 19 23 23 C 1.38235 * 119.99896 * 0.51063 * 22 21 20 24 24 C 1.38237 * 119.99806 * 359.74470 * 23 22 21 25 25 C 1.38235 * 120.00098 * 89.99945 * 20 19 10 26 26 H 1.08994 * 109.47442 * 59.99649 * 1 2 3 27 27 H 1.08996 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46715 * 299.99980 * 1 2 3 29 29 H 1.09000 * 109.46538 * 240.00067 * 2 1 3 30 30 H 1.08994 * 109.47442 * 120.00351 * 2 1 3 31 31 H 1.08995 * 109.47102 * 299.99938 * 3 2 1 32 32 H 1.08998 * 109.46875 * 60.00368 * 3 2 1 33 33 H 1.08994 * 109.47437 * 300.00069 * 4 3 2 34 34 H 1.08998 * 109.47400 * 60.00404 * 4 3 2 35 35 H 1.08997 * 109.47014 * 294.39860 * 7 5 4 36 36 H 1.08996 * 109.46948 * 54.39821 * 7 5 4 37 37 H 1.09006 * 109.47229 * 300.00555 * 8 7 5 38 38 H 1.09005 * 109.47026 * 59.99876 * 8 7 5 39 39 H 1.08994 * 109.47212 * 180.02562 * 9 8 7 40 40 H 1.09007 * 109.46671 * 299.99975 * 9 8 7 41 41 H 1.08996 * 109.47107 * 59.99790 * 9 8 7 42 42 H 0.96998 * 120.00613 * 179.97438 * 14 13 11 43 43 H 1.09000 * 109.47413 * 204.73290 * 19 10 5 44 44 H 1.09001 * 109.47284 * 324.73692 * 19 10 5 45 45 H 1.08004 * 119.99982 * 0.02562 * 21 20 19 46 46 H 1.07998 * 120.00048 * 180.23100 * 22 21 20 47 47 H 1.07998 * 119.99912 * 179.72493 * 23 22 21 48 48 H 1.07992 * 119.99993 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.00169 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6238 3.4320 -0.8250 7 6 5.6011 2.8881 -0.1652 8 6 6.0960 4.3291 -0.3047 9 6 7.6170 4.3323 -0.4705 10 7 3.7252 3.5278 1.2677 11 6 4.0710 2.9387 2.4545 12 1 4.0459 1.8633 2.5510 13 6 4.4537 3.7236 3.5334 14 7 4.5771 3.1851 4.7281 15 14 4.7937 5.5442 3.2900 16 1 3.5756 6.3245 3.6258 17 1 5.9093 5.9623 4.1764 18 1 5.1663 5.7931 1.8742 19 6 3.0004 4.8008 1.2657 20 6 1.5216 4.5368 1.1455 21 6 0.9307 4.4698 -0.1023 22 6 -0.4250 4.2227 -0.2128 23 6 -1.1916 4.0532 0.9250 24 6 -0.6016 4.1255 2.1730 25 6 0.7550 4.3673 2.2833 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.9284 0.8890 34 1 3.9330 0.9287 -0.8909 35 1 6.0624 2.4285 0.7089 36 1 5.8708 2.3233 -1.0576 37 1 5.6345 4.7887 -1.1788 38 1 5.8262 4.8939 0.5877 39 1 7.9695 5.3589 -0.5694 40 1 8.0786 3.8726 0.4034 41 1 7.8863 3.7677 -1.3631 42 1 4.8449 3.7335 5.4821 43 1 3.1999 5.3340 2.1953 44 1 3.3312 5.4060 0.4216 45 1 1.5289 4.6062 -0.9912 46 1 -0.8860 4.1667 -1.1878 47 1 -2.2515 3.8646 0.8388 48 1 -1.2005 3.9935 3.0619 49 1 1.2158 4.4245 3.2584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258767592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:27 Heat of formation + Delta-G solvation = 21.373748 kcal Electronic energy + Delta-G solvation = -25053.181058 eV Core-core repulsion = 21979.929601 eV Total energy + Delta-G solvation = -3073.251458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.96254 -37.30444 -34.68474 -33.79801 -31.78125 -31.40189 -30.33266 -29.53367 -27.42026 -25.58219 -24.14112 -22.96751 -21.94347 -21.15702 -20.72072 -20.06814 -19.31833 -16.80060 -15.95303 -15.52920 -15.48679 -14.76388 -14.58245 -14.18397 -13.80811 -13.73335 -13.33173 -12.97427 -12.89119 -12.73538 -12.56798 -12.37627 -12.14673 -12.08461 -11.83921 -11.48423 -11.27176 -11.09453 -10.99517 -10.84517 -10.66607 -10.51371 -10.46910 -10.23571 -10.20029 -9.92302 -9.79152 -9.60331 -9.47740 -9.13996 -8.58521 -8.34801 -8.10130 -6.81450 -5.92686 -3.38212 1.92786 1.97058 3.28941 3.41279 3.47759 4.32285 4.50017 5.08087 5.24147 5.33319 5.37947 5.41241 5.44478 5.52183 5.56509 5.61342 5.64787 5.70681 5.78605 5.93392 5.95589 6.06016 6.06533 6.08981 6.17999 6.20908 6.23519 6.24770 6.38494 6.41304 6.45393 6.46813 6.50408 6.57347 6.58878 6.62827 6.63593 6.78335 6.85851 6.98287 7.05426 7.06721 7.10424 7.17894 7.22100 7.34260 7.58654 8.08839 8.42917 8.99864 9.73738 10.12816 11.22438 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.007609 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.912820 B = 3679.209617 C = 4456.514621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.125 4.125 5 C 0.182 3.818 6 H 0.048 0.952 7 C -0.125 4.125 8 C -0.129 4.129 9 C -0.148 4.148 10 N -0.588 5.588 11 C -0.247 4.247 12 H 0.084 0.916 13 C 0.030 3.970 14 N -0.911 5.911 15 Si 0.882 3.118 16 H -0.291 1.291 17 H -0.309 1.309 18 H -0.256 1.256 19 C 0.169 3.831 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.097 4.097 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 0.514 -10.843 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.145 4.145 4 C -0.164 4.164 5 C 0.076 3.924 6 H 0.066 0.934 7 C -0.164 4.164 8 C -0.167 4.167 9 C -0.205 4.205 10 N -0.309 5.309 11 C -0.376 4.376 12 H 0.101 0.899 13 C -0.170 4.170 14 N -0.553 5.553 15 Si 0.716 3.284 16 H -0.220 1.220 17 H -0.238 1.238 18 H -0.182 1.182 19 C 0.044 3.956 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.142 4.142 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.544 0.520 -10.667 12.033 hybrid contribution 0.086 0.918 0.126 0.931 sum -5.458 1.438 -10.541 11.957 Atomic orbital electron populations 1.21720 0.96638 1.00393 1.01607 1.21526 0.95180 0.98328 1.00970 1.21543 0.95722 0.95056 1.02187 1.21913 0.95405 0.98219 1.00847 1.20402 0.92220 0.92264 0.87539 0.93352 1.21969 0.98022 0.95755 1.00639 1.21678 0.94444 0.98502 1.02042 1.21749 0.97366 1.00354 1.01023 1.44116 1.61403 1.22931 1.02419 1.18739 1.38653 0.93058 0.87142 0.89866 1.25396 0.98133 0.97590 0.95838 1.69756 1.50530 1.35846 0.99190 0.86994 0.76477 0.87013 0.77931 1.22013 1.23811 1.18173 1.20328 0.86345 0.89581 0.99364 1.20925 0.97729 0.96752 0.92545 1.20902 0.94397 1.01148 0.96868 1.20929 0.94288 1.01545 0.97687 1.20900 0.98984 1.02783 0.92868 1.21066 0.95238 1.00882 0.97013 1.21116 0.93180 0.98336 0.98979 0.93351 0.93761 0.92761 0.93248 0.92415 0.93651 0.90299 0.91159 0.93850 0.90939 0.93877 0.93790 0.90101 0.93856 0.92858 0.93658 0.92895 0.92629 0.93482 0.87225 0.87323 0.87342 0.87066 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.11 -1.81 4.35 -26.73 -0.12 -1.93 16 4 C -0.12 -2.19 4.54 -26.73 -0.12 -2.31 16 5 C 0.18 3.34 2.11 -67.93 -0.14 3.19 16 6 H 0.05 0.84 7.91 -51.93 -0.41 0.43 16 7 C -0.12 -2.21 4.69 -26.73 -0.13 -2.34 16 8 C -0.13 -2.24 5.83 -26.73 -0.16 -2.39 16 9 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 10 N -0.59 -12.42 1.11 -167.03 -0.18 -12.60 16 11 C -0.25 -6.26 8.88 -15.06 -0.13 -6.40 16 12 H 0.08 2.35 6.61 -52.49 -0.35 2.00 16 13 C 0.03 0.80 5.45 -17.43 -0.09 0.71 16 14 N -0.91 -26.83 13.97 55.49 0.78 -26.05 16 15 Si 0.88 21.36 24.22 -169.99 -4.12 17.24 16 16 H -0.29 -7.04 6.89 56.52 0.39 -6.65 16 17 H -0.31 -7.87 7.11 56.52 0.40 -7.46 16 18 H -0.26 -5.74 4.19 56.52 0.24 -5.51 16 19 C 0.17 3.45 3.97 -5.20 -0.02 3.43 16 20 C -0.08 -1.43 4.18 -104.63 -0.44 -1.87 16 21 C -0.11 -1.85 8.27 -39.58 -0.33 -2.18 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 25 C -0.10 -1.86 9.70 -39.58 -0.38 -2.25 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.73 7.57 -51.93 -0.39 0.34 16 32 H 0.08 1.57 6.37 -51.93 -0.33 1.24 16 33 H 0.07 1.41 6.49 -51.93 -0.34 1.07 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.47 7.66 -51.93 -0.40 1.07 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.63 4.91 -51.93 -0.26 1.38 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 43 H 0.06 1.26 2.46 -51.93 -0.13 1.13 16 44 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 45 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 49 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -27.12 371.53 -9.70 -36.81 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -9.09 Total: 5.95 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.68 Total: -26.95 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.59 Total: -38.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.12 Total: 17.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.12 -9.70 -36.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258767592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.186 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds