Wall clock time and date at job start Tue Mar 31 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 C 1.53001 * 109.46679 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46679 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47602 * 306.55215 * 5 4 3 7 7 C 1.53002 * 109.47014 * 186.54979 * 5 4 3 8 8 C 1.52998 * 109.47333 * 174.39815 * 7 5 4 9 9 C 1.52999 * 109.47525 * 180.02562 * 8 7 5 10 10 N 1.46503 * 109.47232 * 66.55473 * 5 4 3 11 11 C 1.36931 * 120.00161 * 53.31605 * 10 5 4 12 12 H 1.07999 * 119.99945 * 323.63865 * 11 10 5 13 13 C 1.38805 * 120.00197 * 143.64113 * 11 10 5 14 14 N 1.31621 * 120.00324 * 169.04335 * 13 11 10 15 15 Si 1.86800 * 119.99960 * 349.04449 * 13 11 10 16 16 H 1.48507 * 109.47169 * 95.62824 * 15 13 11 17 17 H 1.48499 * 109.47419 * 215.62730 * 15 13 11 18 18 H 1.48500 * 109.47102 * 335.62946 * 15 13 11 19 19 C 1.46495 * 119.99787 * 233.31992 * 10 5 4 20 20 C 1.50699 * 109.47281 * 84.73477 * 19 10 5 21 21 C 1.38234 * 120.00049 * 269.72435 * 20 19 10 22 22 C 1.38243 * 120.00111 * 179.76446 * 21 20 19 23 23 C 1.38235 * 119.99896 * 0.51063 * 22 21 20 24 24 C 1.38237 * 119.99806 * 359.74470 * 23 22 21 25 25 C 1.38235 * 120.00098 * 89.99945 * 20 19 10 26 26 H 1.08994 * 109.47442 * 59.99649 * 1 2 3 27 27 H 1.08996 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46715 * 299.99980 * 1 2 3 29 29 H 1.09000 * 109.46538 * 240.00067 * 2 1 3 30 30 H 1.08994 * 109.47442 * 120.00351 * 2 1 3 31 31 H 1.08995 * 109.47102 * 299.99938 * 3 2 1 32 32 H 1.08998 * 109.46875 * 60.00368 * 3 2 1 33 33 H 1.08994 * 109.47437 * 300.00069 * 4 3 2 34 34 H 1.08998 * 109.47400 * 60.00404 * 4 3 2 35 35 H 1.08997 * 109.47014 * 294.39860 * 7 5 4 36 36 H 1.08996 * 109.46948 * 54.39821 * 7 5 4 37 37 H 1.09006 * 109.47229 * 300.00555 * 8 7 5 38 38 H 1.09005 * 109.47026 * 59.99876 * 8 7 5 39 39 H 1.08994 * 109.47212 * 180.02562 * 9 8 7 40 40 H 1.09007 * 109.46671 * 299.99975 * 9 8 7 41 41 H 1.08996 * 109.47107 * 59.99790 * 9 8 7 42 42 H 0.96998 * 120.00613 * 179.97438 * 14 13 11 43 43 H 1.09000 * 109.47413 * 204.73290 * 19 10 5 44 44 H 1.09001 * 109.47284 * 324.73692 * 19 10 5 45 45 H 1.08004 * 119.99982 * 0.02562 * 21 20 19 46 46 H 1.07998 * 120.00048 * 180.23100 * 22 21 20 47 47 H 1.07998 * 119.99912 * 179.72493 * 23 22 21 48 48 H 1.07992 * 119.99993 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.00169 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6238 3.4320 -0.8250 7 6 5.6011 2.8881 -0.1652 8 6 6.0960 4.3291 -0.3047 9 6 7.6170 4.3323 -0.4705 10 7 3.7252 3.5278 1.2677 11 6 4.0710 2.9387 2.4545 12 1 4.0459 1.8633 2.5510 13 6 4.4537 3.7236 3.5334 14 7 4.5771 3.1851 4.7281 15 14 4.7937 5.5442 3.2900 16 1 3.5756 6.3245 3.6258 17 1 5.9093 5.9623 4.1764 18 1 5.1663 5.7931 1.8742 19 6 3.0004 4.8008 1.2657 20 6 1.5216 4.5368 1.1455 21 6 0.9307 4.4698 -0.1023 22 6 -0.4250 4.2227 -0.2128 23 6 -1.1916 4.0532 0.9250 24 6 -0.6016 4.1255 2.1730 25 6 0.7550 4.3673 2.2833 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.9284 0.8890 34 1 3.9330 0.9287 -0.8909 35 1 6.0624 2.4285 0.7089 36 1 5.8708 2.3233 -1.0576 37 1 5.6345 4.7887 -1.1788 38 1 5.8262 4.8939 0.5877 39 1 7.9695 5.3589 -0.5694 40 1 8.0786 3.8726 0.4034 41 1 7.8863 3.7677 -1.3631 42 1 4.8449 3.7335 5.4821 43 1 3.1999 5.3340 2.1953 44 1 3.3312 5.4060 0.4216 45 1 1.5289 4.6062 -0.9912 46 1 -0.8860 4.1667 -1.1878 47 1 -2.2515 3.8646 0.8388 48 1 -1.2005 3.9935 3.0619 49 1 1.2158 4.4245 3.2584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258767592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:27 Heat of formation + Delta-G solvation = 10.215538 kcal Electronic energy + Delta-G solvation = -25053.664915 eV Core-core repulsion = 21979.929601 eV Total energy + Delta-G solvation = -3073.735314 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36703 -38.77049 -36.05632 -35.28080 -33.68936 -32.74084 -31.62586 -31.04482 -28.75754 -27.28699 -25.62477 -24.49683 -23.26451 -22.45140 -22.09400 -21.41867 -20.99005 -18.50951 -17.51748 -17.19140 -17.04476 -16.12994 -15.89770 -15.63813 -15.28977 -15.09304 -14.72628 -14.57165 -14.21105 -14.17234 -14.04092 -13.88451 -13.73727 -13.38291 -13.21818 -12.97752 -12.79659 -12.44942 -12.39535 -12.19754 -12.16157 -11.95010 -11.83081 -11.80953 -11.66760 -11.48907 -11.22448 -11.10624 -10.98278 -10.81792 -10.61582 -9.63363 -9.44677 -8.64636 -8.05979 -5.45922 0.63774 0.67089 1.30104 1.40037 1.49019 2.45907 2.96555 3.29367 3.49428 3.91876 4.04851 4.15070 4.22834 4.29164 4.30795 4.35746 4.39210 4.41360 4.44445 4.47789 4.59217 4.66988 4.75188 4.79600 4.86727 4.92141 4.93888 4.99075 5.01029 5.08870 5.13841 5.16036 5.18779 5.27866 5.29680 5.31471 5.37941 5.44295 5.47755 5.64452 5.66978 5.72589 5.73193 5.75835 5.78368 5.96552 6.07091 6.29928 6.33154 7.08848 7.75602 8.15533 9.13526 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.007609 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.912820 B = 3679.209617 C = 4456.514621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.120 4.120 5 C 0.178 3.822 6 H 0.074 0.926 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.145 4.145 10 N -0.590 5.590 11 C -0.207 4.207 12 H 0.044 0.956 13 C -0.030 4.030 14 N -0.966 5.966 15 Si 0.936 3.064 16 H -0.297 1.297 17 H -0.330 1.330 18 H -0.224 1.224 19 C 0.167 3.833 20 C -0.092 4.092 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.128 4.128 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.254 0.746 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.131 0.869 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.122 0.878 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 1.021 -15.758 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.159 4.159 5 C 0.073 3.927 6 H 0.092 0.908 7 C -0.159 4.159 8 C -0.166 4.166 9 C -0.202 4.202 10 N -0.312 5.312 11 C -0.337 4.337 12 H 0.062 0.938 13 C -0.224 4.224 14 N -0.613 5.613 15 Si 0.770 3.230 16 H -0.226 1.226 17 H -0.261 1.261 18 H -0.148 1.148 19 C 0.042 3.958 20 C -0.095 4.095 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.147 4.147 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.149 0.851 46 H 0.165 0.835 47 H 0.160 0.840 48 H 0.140 0.860 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.332 1.038 -15.647 17.311 hybrid contribution 0.508 0.660 1.556 1.765 sum -6.824 1.698 -14.091 15.748 Atomic orbital electron populations 1.21667 0.95237 1.01463 1.01432 1.21513 0.96433 0.97110 1.00890 1.21413 0.94873 0.96002 1.01200 1.21856 0.96172 0.97621 1.00260 1.20628 0.92923 0.92605 0.86557 0.90765 1.21922 0.97183 0.96547 1.00293 1.21640 0.96081 0.97433 1.01405 1.21724 0.95753 1.01453 1.01318 1.44117 1.62055 1.22989 1.02028 1.18467 1.35428 0.91356 0.88473 0.93797 1.25920 0.99546 1.01290 0.95652 1.69910 1.54128 1.37159 1.00137 0.86115 0.75087 0.82762 0.79002 1.22649 1.26063 1.14796 1.20305 0.87902 0.88788 0.98778 1.20705 0.96552 0.98512 0.93693 1.21085 0.95504 1.00341 0.96033 1.21353 0.93485 0.99267 0.99289 1.21290 1.00689 1.00743 0.91853 1.21231 0.94084 1.00685 0.98856 1.20984 0.94893 1.01182 0.97669 0.91761 0.92193 0.94533 0.91208 0.94614 0.91789 0.93807 0.94963 0.91096 0.94611 0.90961 0.91408 0.93365 0.92595 0.94520 0.91435 0.93705 0.95343 0.91181 0.85109 0.83512 0.83985 0.86017 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.46 5.93 30.60 0.18 -3.28 16 3 C -0.10 -3.11 4.35 30.60 0.13 -2.97 16 4 C -0.12 -4.09 4.54 30.60 0.14 -3.95 16 5 C 0.18 6.22 2.11 44.99 0.10 6.31 16 6 H 0.07 2.26 7.91 -2.39 -0.02 2.24 16 7 C -0.12 -4.07 4.69 30.59 0.14 -3.92 16 8 C -0.13 -4.11 5.83 30.59 0.18 -3.93 16 9 C -0.15 -4.06 9.91 71.98 0.71 -3.34 16 10 N -0.59 -25.15 1.11 -682.36 -0.76 -25.90 16 11 C -0.21 -11.11 8.88 84.03 0.75 -10.36 16 12 H 0.04 2.70 6.61 -2.91 -0.02 2.68 16 13 C -0.03 -1.76 5.45 84.86 0.46 -1.30 16 14 N -0.97 -61.40 13.97 21.65 0.30 -61.10 16 15 Si 0.94 46.72 24.22 68.60 1.66 48.38 16 16 H -0.30 -14.86 6.89 99.48 0.69 -14.18 16 17 H -0.33 -17.37 7.11 99.48 0.71 -16.66 16 18 H -0.22 -9.87 4.19 99.48 0.42 -9.46 16 19 C 0.17 6.73 3.97 85.63 0.34 7.07 16 20 C -0.09 -3.37 4.18 -19.87 -0.08 -3.45 16 21 C -0.11 -3.18 8.27 22.27 0.18 -3.00 16 22 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 23 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 24 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 25 C -0.13 -5.06 9.70 22.27 0.22 -4.84 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.80 7.57 -2.39 -0.02 1.78 16 32 H 0.04 1.72 6.37 -2.39 -0.02 1.71 16 33 H 0.03 1.33 6.49 -2.39 -0.02 1.32 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.03 1.46 7.66 -2.39 -0.02 1.44 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 38 H 0.05 1.86 4.91 -2.38 -0.01 1.85 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.03 1.32 2.46 -2.39 -0.01 1.32 16 44 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 45 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 46 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 47 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 48 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 49 H 0.08 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -65.29 371.53 6.61 -58.68 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.57 Total: 23.28 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 4.83 Total: -43.33 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -0.45 Total: -87.01 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.66 Total: 48.38 kcal Total: -65.29 6.61 -58.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258767592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.896 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds