Wall clock time and date at job start Tue Mar 31 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46926 * 2 1 4 4 C 1.52990 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47392 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47549 * 54.99688 * 5 4 3 7 7 C 1.53001 * 109.47625 * 175.00335 * 5 4 3 8 8 C 1.52996 * 109.47357 * 184.99858 * 7 5 4 9 9 C 1.52999 * 109.46885 * 179.97438 * 8 7 5 10 10 N 1.46505 * 109.47094 * 295.00024 * 5 4 3 11 11 C 1.36939 * 119.99824 * 300.00291 * 10 5 4 12 12 H 1.08002 * 120.00266 * 5.66334 * 11 10 5 13 13 C 1.38814 * 120.00107 * 185.67351 * 11 10 5 14 14 N 1.31619 * 119.99661 * 355.01632 * 13 11 10 15 15 Si 1.86797 * 120.00389 * 175.02128 * 13 11 10 16 16 H 1.48499 * 109.46790 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46969 * 119.99436 * 15 13 11 18 18 H 1.48494 * 109.47295 * 239.99801 * 15 13 11 19 19 C 1.46496 * 120.00128 * 119.99903 * 10 5 4 20 20 C 1.50691 * 109.47281 * 85.38454 * 19 10 5 21 21 C 1.38239 * 119.99979 * 274.72510 * 20 19 10 22 22 C 1.38239 * 120.00247 * 179.76176 * 21 20 19 23 23 C 1.38235 * 119.99410 * 0.51342 * 22 21 20 24 24 C 1.38231 * 120.00181 * 359.74304 * 23 22 21 25 25 C 1.38230 * 120.00338 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47349 * 299.99920 * 1 2 3 28 28 H 1.08997 * 109.47320 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.46894 * 239.99801 * 2 1 3 30 30 H 1.09002 * 109.46628 * 119.99785 * 2 1 3 31 31 H 1.09000 * 109.47041 * 59.99892 * 3 2 1 32 32 H 1.08997 * 109.47072 * 300.00092 * 3 2 1 33 33 H 1.09007 * 109.47460 * 300.00286 * 4 3 2 34 34 H 1.09000 * 109.47125 * 60.00096 * 4 3 2 35 35 H 1.09002 * 109.46418 * 304.99875 * 7 5 4 36 36 H 1.09005 * 109.47433 * 64.99341 * 7 5 4 37 37 H 1.09001 * 109.46934 * 299.99740 * 8 7 5 38 38 H 1.08994 * 109.47019 * 59.99801 * 8 7 5 39 39 H 1.09001 * 109.47311 * 299.99740 * 9 8 7 40 40 H 1.08994 * 109.47265 * 60.00184 * 9 8 7 41 41 H 1.09005 * 109.47077 * 179.97438 * 9 8 7 42 42 H 0.96999 * 120.00308 * 180.02562 * 14 13 11 43 43 H 1.09005 * 109.46994 * 205.38611 * 19 10 5 44 44 H 1.09002 * 109.47206 * 325.38137 * 19 10 5 45 45 H 1.08000 * 119.99561 * 0.02562 * 21 20 19 46 46 H 1.07994 * 120.00258 * 180.22979 * 22 21 20 47 47 H 1.08005 * 119.99631 * 179.71857 * 23 22 21 48 48 H 1.08006 * 120.00007 * 179.97438 * 24 23 22 49 49 H 1.08003 * 120.00351 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6450 3.4239 0.8430 7 6 5.6047 2.8869 0.1276 8 6 6.1043 4.3276 0.2536 9 6 7.6290 4.3293 0.3805 10 7 3.6929 3.5404 -1.2505 11 6 4.1247 3.0373 -2.4487 12 1 4.6731 2.1074 -2.4778 13 6 3.8576 3.7226 -3.6260 14 7 3.1064 4.8031 -3.6025 15 14 4.5643 3.1114 -5.2435 16 1 5.3688 1.8871 -5.0009 17 1 3.4559 2.7983 -6.1809 18 1 5.4301 4.1632 -5.8343 19 6 2.8438 4.7339 -1.2205 20 6 3.7026 5.9565 -1.0240 21 6 4.0637 6.3499 0.2511 22 6 4.8556 7.4686 0.4311 23 6 5.2776 8.2000 -0.6635 24 6 4.9121 7.8096 -1.9382 25 6 4.1242 6.6882 -2.1184 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 0.8909 34 1 3.9336 0.9286 -0.8891 35 1 5.8965 2.3224 1.0131 36 1 6.0433 2.4264 -0.7577 37 1 5.8124 4.8921 -0.6320 38 1 5.6658 4.7880 1.1388 39 1 7.9205 3.7649 1.2662 40 1 8.0678 3.8687 -0.5046 41 1 7.9850 5.3557 0.4698 42 1 2.9195 5.2819 -4.4251 43 1 2.3019 4.8181 -2.1625 44 1 2.1328 4.6534 -0.3982 45 1 3.7306 5.7808 1.1064 46 1 5.1407 7.7738 1.4270 47 1 5.8925 9.0766 -0.5226 48 1 5.2415 8.3812 -2.7933 49 1 3.8384 6.3834 -3.1143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258767595.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:31 Heat of formation + Delta-G solvation = 32.600124 kcal Electronic energy + Delta-G solvation = -24974.691621 eV Core-core repulsion = 21901.926976 eV Total energy + Delta-G solvation = -3072.764646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.59159 -37.03467 -34.65521 -33.87871 -31.62136 -30.89091 -29.72415 -29.07990 -27.33167 -25.47973 -23.96172 -22.76528 -21.55085 -21.03275 -20.07575 -19.96445 -19.37935 -16.69787 -15.66232 -15.46750 -14.80816 -14.49768 -13.98497 -13.85662 -13.76561 -13.55284 -13.33725 -13.00533 -12.78730 -12.43789 -12.27918 -12.21482 -11.88579 -11.68191 -11.34851 -11.16339 -11.04262 -10.97331 -10.84734 -10.60514 -10.49193 -10.35070 -10.25217 -10.19168 -10.07906 -9.85262 -9.73541 -9.62541 -9.41446 -9.33684 -8.63173 -7.80480 -7.52180 -6.78119 -5.46628 -3.17978 2.42538 2.53689 3.36452 3.44090 3.45043 4.44753 4.88262 5.22039 5.31359 5.36253 5.51176 5.54122 5.64066 5.75302 5.79744 5.85476 5.88730 5.95474 5.97157 6.06466 6.10589 6.14145 6.24322 6.28636 6.34032 6.40901 6.44363 6.52210 6.55574 6.58929 6.61112 6.61608 6.73255 6.80404 6.89370 6.94931 7.02924 7.11406 7.18267 7.21332 7.26646 7.31238 7.47310 7.62124 7.78874 7.95285 8.10737 8.29624 8.67488 9.35188 9.89961 10.26160 11.22417 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.007148 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.029211 B = 3916.387374 C = 4784.420947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.124 4.124 5 C 0.173 3.827 6 H 0.050 0.950 7 C -0.125 4.125 8 C -0.117 4.117 9 C -0.146 4.146 10 N -0.578 5.578 11 C -0.188 4.188 12 H 0.075 0.925 13 C -0.027 4.027 14 N -0.908 5.908 15 Si 0.912 3.088 16 H -0.284 1.284 17 H -0.293 1.293 18 H -0.292 1.292 19 C 0.140 3.860 20 C -0.054 4.054 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.096 4.096 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.249 0.751 43 H 0.176 0.824 44 H 0.001 0.999 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 -1.642 6.714 6.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.164 4.164 5 C 0.065 3.935 6 H 0.068 0.932 7 C -0.164 4.164 8 C -0.155 4.155 9 C -0.204 4.204 10 N -0.297 5.297 11 C -0.317 4.317 12 H 0.093 0.907 13 C -0.218 4.218 14 N -0.563 5.563 15 Si 0.744 3.256 16 H -0.209 1.209 17 H -0.220 1.220 18 H -0.219 1.219 19 C 0.016 3.984 20 C -0.057 4.057 21 C -0.143 4.143 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.114 4.114 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.191 0.809 44 H 0.019 0.981 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.169 -1.644 6.557 6.762 hybrid contribution 0.855 -0.115 -0.463 0.979 sum 1.024 -1.758 6.095 6.425 Atomic orbital electron populations 1.21761 0.96620 1.00629 1.01712 1.21535 0.95191 0.98237 1.01029 1.21461 0.95927 0.95059 1.02161 1.21976 0.95407 0.98694 1.00293 1.20441 0.92140 0.91727 0.89199 0.93173 1.22007 0.98145 0.96418 0.99875 1.21673 0.93601 0.97592 1.02596 1.21756 0.97966 1.00278 1.00384 1.44202 1.57154 1.27872 1.00455 1.19467 1.25268 1.02893 0.84040 0.90697 1.24595 1.01821 0.97509 0.97844 1.69007 1.42833 1.20226 1.24254 0.85998 0.78237 0.77672 0.83738 1.20914 1.22037 1.21899 1.21664 0.90672 0.80936 1.05136 1.20929 0.97004 0.96752 0.91022 1.21046 0.99388 0.96569 0.97342 1.20773 1.01054 0.97339 0.97253 1.20832 1.02158 0.99946 0.93537 1.21262 1.01070 0.98867 0.95737 1.22902 0.93222 0.91115 1.04168 0.93616 0.93224 0.92621 0.92392 0.93154 0.93630 0.90414 0.93994 0.91918 0.94326 0.92122 0.89595 0.93357 0.94117 0.93409 0.93795 0.93733 0.80866 0.98119 0.88423 0.88453 0.88515 0.88292 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.89 16 3 C -0.11 -1.79 5.10 -26.74 -0.14 -1.93 16 4 C -0.12 -2.15 4.61 -26.74 -0.12 -2.27 16 5 C 0.17 3.27 2.14 -67.93 -0.15 3.13 16 6 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 7 C -0.13 -2.29 4.61 -26.73 -0.12 -2.42 16 8 C -0.12 -2.18 4.36 -26.73 -0.12 -2.30 16 9 C -0.15 -2.41 9.91 37.16 0.37 -2.04 16 10 N -0.58 -12.54 1.41 -167.03 -0.23 -12.77 16 11 C -0.19 -4.49 8.44 -15.06 -0.13 -4.61 16 12 H 0.08 1.81 6.66 -52.49 -0.35 1.46 16 13 C -0.03 -0.67 5.45 -17.43 -0.09 -0.77 16 14 N -0.91 -22.31 5.74 55.49 0.32 -22.00 16 15 Si 0.91 20.64 29.56 -169.99 -5.02 15.61 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 C 0.14 3.13 5.24 -5.20 -0.03 3.11 16 20 C -0.05 -1.17 3.89 -104.63 -0.41 -1.58 16 21 C -0.12 -2.43 6.37 -39.58 -0.25 -2.68 16 22 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16 23 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 24 C -0.15 -3.01 10.05 -39.59 -0.40 -3.41 16 25 C -0.10 -2.12 9.22 -39.59 -0.36 -2.49 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.51 7.75 -51.93 -0.40 1.10 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.18 7.00 -51.93 -0.36 0.81 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.21 7.23 -51.93 -0.38 0.83 16 37 H 0.09 1.89 5.44 -51.93 -0.28 1.61 16 38 H 0.05 0.88 6.60 -51.93 -0.34 0.53 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.25 6.06 8.09 -40.82 -0.33 5.73 16 43 H 0.18 4.33 4.54 -82.57 -0.38 3.95 16 44 H 0.00 0.01 7.99 -51.93 -0.42 -0.40 16 45 H 0.10 1.82 7.69 -52.49 -0.40 1.42 16 46 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 48 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 49 H 0.17 4.13 4.56 -52.58 -0.24 3.89 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -23.42 368.42 -10.92 -34.34 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -9.00 Total: 9.13 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -2.53 Total: -29.86 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.08 Total: -34.77 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -23.42 -10.92 -34.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258767595.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.937 kcal (2) G-P(sol) polarization free energy of solvation -23.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds