Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46926 * 2 1 4 4 C 1.52990 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47392 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47549 * 54.99688 * 5 4 3 7 7 C 1.53001 * 109.47625 * 175.00335 * 5 4 3 8 8 C 1.52996 * 109.47357 * 184.99858 * 7 5 4 9 9 C 1.52999 * 109.46885 * 179.97438 * 8 7 5 10 10 N 1.46505 * 109.47094 * 295.00024 * 5 4 3 11 11 C 1.36939 * 119.99824 * 300.00291 * 10 5 4 12 12 H 1.08002 * 120.00266 * 5.66334 * 11 10 5 13 13 C 1.38814 * 120.00107 * 185.67351 * 11 10 5 14 14 N 1.31619 * 119.99661 * 355.01632 * 13 11 10 15 15 Si 1.86797 * 120.00389 * 175.02128 * 13 11 10 16 16 H 1.48499 * 109.46790 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46969 * 119.99436 * 15 13 11 18 18 H 1.48494 * 109.47295 * 239.99801 * 15 13 11 19 19 C 1.46496 * 120.00128 * 119.99903 * 10 5 4 20 20 C 1.50691 * 109.47281 * 85.38454 * 19 10 5 21 21 C 1.38239 * 119.99979 * 274.72510 * 20 19 10 22 22 C 1.38239 * 120.00247 * 179.76176 * 21 20 19 23 23 C 1.38235 * 119.99410 * 0.51342 * 22 21 20 24 24 C 1.38231 * 120.00181 * 359.74304 * 23 22 21 25 25 C 1.38230 * 120.00338 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47349 * 299.99920 * 1 2 3 28 28 H 1.08997 * 109.47320 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.46894 * 239.99801 * 2 1 3 30 30 H 1.09002 * 109.46628 * 119.99785 * 2 1 3 31 31 H 1.09000 * 109.47041 * 59.99892 * 3 2 1 32 32 H 1.08997 * 109.47072 * 300.00092 * 3 2 1 33 33 H 1.09007 * 109.47460 * 300.00286 * 4 3 2 34 34 H 1.09000 * 109.47125 * 60.00096 * 4 3 2 35 35 H 1.09002 * 109.46418 * 304.99875 * 7 5 4 36 36 H 1.09005 * 109.47433 * 64.99341 * 7 5 4 37 37 H 1.09001 * 109.46934 * 299.99740 * 8 7 5 38 38 H 1.08994 * 109.47019 * 59.99801 * 8 7 5 39 39 H 1.09001 * 109.47311 * 299.99740 * 9 8 7 40 40 H 1.08994 * 109.47265 * 60.00184 * 9 8 7 41 41 H 1.09005 * 109.47077 * 179.97438 * 9 8 7 42 42 H 0.96999 * 120.00308 * 180.02562 * 14 13 11 43 43 H 1.09005 * 109.46994 * 205.38611 * 19 10 5 44 44 H 1.09002 * 109.47206 * 325.38137 * 19 10 5 45 45 H 1.08000 * 119.99561 * 0.02562 * 21 20 19 46 46 H 1.07994 * 120.00258 * 180.22979 * 22 21 20 47 47 H 1.08005 * 119.99631 * 179.71857 * 23 22 21 48 48 H 1.08006 * 120.00007 * 179.97438 * 24 23 22 49 49 H 1.08003 * 120.00351 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6450 3.4239 0.8430 7 6 5.6047 2.8869 0.1276 8 6 6.1043 4.3276 0.2536 9 6 7.6290 4.3293 0.3805 10 7 3.6929 3.5404 -1.2505 11 6 4.1247 3.0373 -2.4487 12 1 4.6731 2.1074 -2.4778 13 6 3.8576 3.7226 -3.6260 14 7 3.1064 4.8031 -3.6025 15 14 4.5643 3.1114 -5.2435 16 1 5.3688 1.8871 -5.0009 17 1 3.4559 2.7983 -6.1809 18 1 5.4301 4.1632 -5.8343 19 6 2.8438 4.7339 -1.2205 20 6 3.7026 5.9565 -1.0240 21 6 4.0637 6.3499 0.2511 22 6 4.8556 7.4686 0.4311 23 6 5.2776 8.2000 -0.6635 24 6 4.9121 7.8096 -1.9382 25 6 4.1242 6.6882 -2.1184 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 0.8909 34 1 3.9336 0.9286 -0.8891 35 1 5.8965 2.3224 1.0131 36 1 6.0433 2.4264 -0.7577 37 1 5.8124 4.8921 -0.6320 38 1 5.6658 4.7880 1.1388 39 1 7.9205 3.7649 1.2662 40 1 8.0678 3.8687 -0.5046 41 1 7.9850 5.3557 0.4698 42 1 2.9195 5.2819 -4.4251 43 1 2.3019 4.8181 -2.1625 44 1 2.1328 4.6534 -0.3982 45 1 3.7306 5.7808 1.1064 46 1 5.1407 7.7738 1.4270 47 1 5.8925 9.0766 -0.5226 48 1 5.2415 8.3812 -2.7933 49 1 3.8384 6.3834 -3.1143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258767595.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = 27.315240 kcal Electronic energy + Delta-G solvation = -24974.920791 eV Core-core repulsion = 21901.926976 eV Total energy + Delta-G solvation = -3072.993815 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17202 -38.55504 -36.03732 -35.42801 -33.15588 -32.49444 -31.27347 -30.61574 -28.70692 -27.25020 -25.35463 -24.34540 -23.09309 -22.34664 -21.54662 -21.43569 -21.00573 -18.44002 -17.30092 -17.01989 -16.24095 -16.02820 -15.57699 -15.45617 -15.21435 -15.05747 -14.84870 -14.36782 -14.19402 -13.93424 -13.72581 -13.62870 -13.24450 -13.19009 -12.95043 -12.75653 -12.67067 -12.37677 -12.33348 -12.07104 -11.98516 -11.87857 -11.83332 -11.69334 -11.66831 -11.26397 -11.25129 -11.17926 -11.00133 -10.95138 -10.43929 -9.34591 -9.10186 -8.53536 -7.31712 -5.02971 0.87895 0.99455 1.50043 1.54927 1.59005 2.59770 3.28671 3.44121 3.88834 3.92088 4.22072 4.30260 4.35561 4.36344 4.38384 4.42593 4.50254 4.55342 4.60769 4.72435 4.74837 4.79755 4.90421 4.97527 4.99335 5.04332 5.07928 5.12659 5.14466 5.16914 5.19185 5.27317 5.32765 5.36867 5.44481 5.49433 5.57792 5.63407 5.65420 5.70497 5.72719 5.77952 5.81422 5.93535 6.06551 6.21227 6.48881 6.63388 6.87157 7.48324 8.11682 8.44268 9.33184 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.007148 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.029211 B = 3916.387374 C = 4784.420947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.118 4.118 5 C 0.170 3.830 6 H 0.053 0.947 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.142 4.142 10 N -0.580 5.580 11 C -0.186 4.186 12 H 0.069 0.931 13 C -0.066 4.066 14 N -0.913 5.913 15 Si 0.953 3.047 16 H -0.282 1.282 17 H -0.299 1.299 18 H -0.303 1.303 19 C 0.145 3.855 20 C -0.067 4.067 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.159 4.159 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.048 0.952 42 H 0.242 0.758 43 H 0.150 0.850 44 H 0.000 1.000 45 H 0.106 0.894 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.111 0.889 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 -1.754 9.266 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.157 4.157 5 C 0.063 3.937 6 H 0.071 0.929 7 C -0.158 4.158 8 C -0.148 4.148 9 C -0.199 4.199 10 N -0.299 5.299 11 C -0.316 4.316 12 H 0.086 0.914 13 C -0.255 4.255 14 N -0.568 5.568 15 Si 0.786 3.214 16 H -0.207 1.207 17 H -0.227 1.227 18 H -0.231 1.231 19 C 0.021 3.979 20 C -0.069 4.069 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.178 4.178 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.165 0.835 44 H 0.018 0.982 45 H 0.125 0.875 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.129 0.871 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.146 -1.764 9.124 9.364 hybrid contribution 0.546 -0.053 -1.208 1.326 sum 1.692 -1.817 7.917 8.297 Atomic orbital electron populations 1.21739 0.95544 1.01783 1.01438 1.21492 0.96159 0.96435 1.01493 1.21359 0.95442 0.96494 1.00643 1.21905 0.95818 0.97474 1.00514 1.20596 0.92815 0.92404 0.87873 0.92911 1.21938 0.97236 0.96641 0.99993 1.21544 0.95175 0.97011 1.01064 1.21704 0.96188 1.00959 1.01035 1.44188 1.56983 1.27869 1.00829 1.19488 1.24629 1.02503 0.84989 0.91350 1.25037 1.02877 0.98172 0.99422 1.69271 1.43273 1.20460 1.23806 0.85348 0.77268 0.76886 0.81916 1.20711 1.22729 1.23050 1.21344 0.90989 0.82029 1.03582 1.20791 0.97607 0.96536 0.91984 1.21094 0.99501 0.97195 0.96513 1.21115 0.99669 0.96262 0.98771 1.21164 1.01666 1.00653 0.92658 1.21424 1.00699 0.98319 0.97309 1.22743 0.95207 0.92860 1.03445 0.91750 0.92443 0.93988 0.93245 0.91284 0.92977 0.94022 0.91443 0.93809 0.91733 0.94232 0.93200 0.92728 0.91877 0.94259 0.93294 0.94535 0.83455 0.98191 0.87549 0.85285 0.85388 0.87122 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.12 -3.19 5.93 30.60 0.18 -3.01 16 3 C -0.10 -3.31 5.10 30.59 0.16 -3.15 16 4 C -0.12 -3.96 4.61 30.59 0.14 -3.82 16 5 C 0.17 6.32 2.14 44.99 0.10 6.41 16 6 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 7 C -0.12 -4.19 4.61 30.59 0.14 -4.05 16 8 C -0.11 -3.92 4.36 30.59 0.13 -3.79 16 9 C -0.14 -4.32 9.91 71.98 0.71 -3.61 16 10 N -0.58 -25.67 1.41 -682.35 -0.96 -26.63 16 11 C -0.19 -9.17 8.44 84.03 0.71 -8.46 16 12 H 0.07 3.41 6.66 -2.91 -0.02 3.39 16 13 C -0.07 -3.34 5.45 84.86 0.46 -2.88 16 14 N -0.91 -47.05 5.74 21.65 0.12 -46.93 16 15 Si 0.95 43.84 29.56 68.60 2.03 45.87 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 18 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 19 C 0.15 6.69 5.24 85.63 0.45 7.14 16 20 C -0.07 -2.90 3.89 -19.87 -0.08 -2.97 16 21 C -0.12 -4.67 6.37 22.27 0.14 -4.53 16 22 C -0.14 -4.71 10.05 22.27 0.22 -4.48 16 23 C -0.14 -4.90 10.05 22.27 0.22 -4.67 16 24 C -0.16 -6.26 10.05 22.27 0.22 -6.03 16 25 C -0.12 -5.62 9.22 22.27 0.21 -5.41 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.65 7.75 -2.39 -0.02 1.63 16 33 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.04 1.63 7.00 -2.39 -0.02 1.62 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.55 7.23 -2.38 -0.02 1.54 16 37 H 0.05 2.17 5.44 -2.39 -0.01 2.15 16 38 H 0.05 1.84 6.60 -2.39 -0.02 1.83 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.24 12.40 8.09 -92.71 -0.75 11.65 16 43 H 0.15 7.75 4.54 -62.89 -0.29 7.46 16 44 H 0.00 0.00 7.99 -2.39 -0.02 -0.02 16 45 H 0.11 3.76 7.69 -2.91 -0.02 3.74 16 46 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 47 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 48 H 0.11 3.96 8.06 -2.91 -0.02 3.93 16 49 H 0.15 7.54 4.56 -3.10 -0.01 7.53 16 Total: -1.00 -51.71 368.42 6.66 -45.05 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.63 Total: 32.81 kcal Atomic # 6 Polarization: -55.01 SS G_CDS: 4.84 Total: -50.18 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -0.83 Total: -73.56 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -51.71 6.66 -45.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258767595.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.370 kcal (2) G-P(sol) polarization free energy of solvation -51.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds