Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 H 1.09003 * 109.46846 * 304.99709 * 3 2 1 5 5 C 1.53002 * 109.47371 * 64.99805 * 3 2 1 6 6 C 1.52998 * 109.46990 * 185.00093 * 3 2 1 7 7 C 1.52996 * 109.47090 * 175.00143 * 6 3 2 8 8 H 1.09002 * 109.47319 * 57.24310 * 7 6 3 9 9 C 1.52999 * 109.47368 * 177.24541 * 7 6 3 10 10 C 1.52998 * 109.47683 * 182.19013 * 9 7 6 11 11 N 1.46500 * 109.47077 * 297.24383 * 7 6 3 12 12 C 1.36939 * 119.99922 * 295.13839 * 11 7 6 13 13 H 1.08000 * 120.00390 * 319.92245 * 12 11 7 14 14 C 1.38821 * 119.99890 * 139.91906 * 12 11 7 15 15 N 1.31614 * 119.99958 * 340.22010 * 14 12 11 16 16 Si 1.86804 * 119.99937 * 160.21971 * 14 12 11 17 17 H 1.48500 * 109.46854 * 59.99936 * 16 14 12 18 18 H 1.48492 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46941 * 300.00076 * 16 14 12 20 20 C 1.46497 * 120.00205 * 115.13758 * 11 7 6 21 21 C 1.50703 * 109.47091 * 90.00440 * 20 11 7 22 22 C 1.38236 * 119.99741 * 269.72441 * 21 20 11 23 23 C 1.38231 * 120.00059 * 179.76500 * 22 21 20 24 24 C 1.38234 * 120.00023 * 0.51013 * 23 22 21 25 25 C 1.38243 * 119.99736 * 359.74531 * 24 23 22 26 26 C 1.38232 * 120.00115 * 90.00155 * 21 20 11 27 27 H 1.09003 * 109.46763 * 59.99951 * 1 2 3 28 28 H 1.09003 * 109.46755 * 300.00525 * 1 2 3 29 29 H 1.08990 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46443 * 119.99630 * 2 1 3 31 31 H 1.08993 * 109.46666 * 239.99469 * 2 1 3 32 32 H 1.08994 * 109.46858 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47103 * 300.00063 * 5 3 2 34 34 H 1.09000 * 109.47140 * 59.99595 * 5 3 2 35 35 H 1.09008 * 109.46606 * 294.99359 * 6 3 2 36 36 H 1.08997 * 109.47631 * 54.99388 * 6 3 2 37 37 H 1.08996 * 109.47017 * 302.19293 * 9 7 6 38 38 H 1.09003 * 109.46955 * 62.18761 * 9 7 6 39 39 H 1.09008 * 109.46833 * 300.00507 * 10 9 7 40 40 H 1.09001 * 109.46750 * 59.99488 * 10 9 7 41 41 H 1.08999 * 109.47587 * 179.97438 * 10 9 7 42 42 H 0.97000 * 120.00112 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.47504 * 209.99906 * 20 11 7 44 44 H 1.08997 * 109.47280 * 329.99915 * 20 11 7 45 45 H 1.08005 * 120.00239 * 0.02562 * 22 21 20 46 46 H 1.08001 * 120.00301 * 180.23372 * 23 22 21 47 47 H 1.07997 * 120.00249 * 179.72354 * 24 23 22 48 48 H 1.08002 * 119.99789 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.99872 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6354 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8848 -0.2511 8 1 3.7306 3.4616 0.6113 9 6 5.5936 2.8912 -0.3078 10 6 6.0954 4.3348 -0.3781 11 7 3.5281 3.4829 -1.4761 12 6 3.8961 2.9869 -2.6983 13 1 4.9188 2.6877 -2.8741 14 6 2.9544 2.8685 -3.7114 15 7 1.6714 2.8512 -3.4186 16 14 3.5083 2.7337 -5.4903 17 1 4.3633 1.5304 -5.6527 18 1 2.3189 2.6178 -6.3717 19 1 4.2833 3.9452 -5.8606 20 6 2.5979 4.6117 -1.3936 21 6 3.3738 5.9036 -1.4031 22 6 3.7921 6.4674 -0.2122 23 6 4.5079 7.6499 -0.2211 24 6 4.7963 8.2742 -1.4203 25 6 4.3734 7.7132 -2.6109 26 6 3.6621 6.5279 -2.6022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.9984 3.1543 1.3070 33 1 0.5490 2.1253 1.3969 34 1 2.0699 1.5875 2.1492 35 1 4.0030 0.9835 0.7598 36 1 3.8572 0.8798 -1.0112 37 1 5.9923 2.4111 0.5858 38 1 5.9266 2.3473 -1.1917 39 1 5.6966 4.8150 -1.2719 40 1 5.7622 4.8787 0.5058 41 1 7.1847 4.3394 -0.4181 42 1 1.0134 2.7689 -4.1265 43 1 1.9212 4.5881 -2.2478 44 1 2.0214 4.5408 -0.4713 45 1 3.5633 5.9817 0.7249 46 1 4.8380 8.0884 0.7090 47 1 5.3517 9.2004 -1.4270 48 1 4.5984 8.2012 -3.5477 49 1 3.3317 6.0896 -3.5323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258796557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = 13.236297 kcal Electronic energy + Delta-G solvation = -25072.177084 eV Core-core repulsion = 21998.572760 eV Total energy + Delta-G solvation = -3073.604324 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.72994 -37.39947 -35.07070 -32.89398 -31.44053 -30.28206 -30.10068 -29.28659 -27.10657 -25.46378 -24.63839 -22.77633 -21.91410 -21.77520 -20.34260 -19.41267 -18.81537 -16.48423 -15.74068 -15.18000 -14.75785 -14.44090 -14.21627 -14.17725 -13.86114 -13.53580 -13.14251 -12.91322 -12.73611 -12.62545 -12.31754 -11.97689 -11.89247 -11.66087 -11.39050 -11.27168 -11.02987 -10.95080 -10.80820 -10.67741 -10.53453 -10.50448 -10.37582 -10.14512 -9.99412 -9.85824 -9.74767 -9.50314 -9.37364 -9.24915 -8.43338 -8.22175 -7.93288 -6.47431 -5.76611 -3.33959 2.07881 2.11419 3.36355 3.42616 3.46089 4.43595 4.55911 5.35295 5.46170 5.48762 5.51067 5.54673 5.62413 5.66474 5.73009 5.91063 5.93838 6.00029 6.07112 6.13053 6.17934 6.18170 6.21694 6.29721 6.37956 6.40612 6.48579 6.53395 6.61390 6.65452 6.67881 6.68590 6.72364 6.79702 6.81726 6.83904 6.99213 7.07883 7.12206 7.16651 7.21470 7.23303 7.41252 7.45857 7.64577 7.68080 7.78520 7.89639 8.58053 9.22834 9.84162 10.45167 11.22263 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.007368 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.429147 B = 3799.532509 C = 4900.421902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.091 4.091 4 H 0.113 0.887 5 C -0.142 4.142 6 C -0.112 4.112 7 C 0.176 3.824 8 H 0.047 0.953 9 C -0.130 4.130 10 C -0.137 4.137 11 N -0.560 5.560 12 C -0.245 4.245 13 H 0.056 0.944 14 C 0.020 3.980 15 N -0.880 5.880 16 Si 0.886 3.114 17 H -0.283 1.283 18 H -0.292 1.292 19 H -0.284 1.284 20 C 0.177 3.823 21 C -0.067 4.067 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.100 4.100 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.028 0.972 42 H 0.254 0.746 43 H 0.098 0.902 44 H 0.032 0.968 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 2.848 6.881 7.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.110 4.110 4 H 0.131 0.869 5 C -0.199 4.199 6 C -0.151 4.151 7 C 0.069 3.931 8 H 0.065 0.935 9 C -0.169 4.169 10 C -0.195 4.195 11 N -0.279 5.279 12 C -0.375 4.375 13 H 0.074 0.926 14 C -0.181 4.181 15 N -0.522 5.522 16 Si 0.715 3.285 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.210 1.210 20 C 0.051 3.949 21 C -0.070 4.070 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.147 4.147 26 C -0.119 4.119 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.051 0.949 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.382 2.773 6.778 7.452 hybrid contribution 0.477 -0.062 -1.026 1.133 sum 1.859 2.711 5.752 6.625 Atomic orbital electron populations 1.21780 0.96874 1.00101 1.01796 1.21486 0.95079 0.97986 1.00331 1.21155 0.96168 0.94814 0.98835 0.86932 1.21900 0.99977 1.00335 0.97705 1.21900 0.95014 0.98724 0.99496 1.20499 0.91049 0.92238 0.89338 0.93490 1.21858 0.98379 0.96597 1.00089 1.21719 0.98175 0.97327 1.02240 1.43612 1.52958 1.30463 1.00865 1.18809 0.92539 1.37889 0.88287 0.92632 1.25112 0.95205 0.99430 0.98356 1.69919 0.99663 1.51190 1.31454 0.86654 0.77578 0.78263 0.85963 1.20948 1.21816 1.21018 1.20017 0.91543 0.81781 1.01566 1.21275 0.97162 0.96705 0.91901 1.20966 0.99290 0.95628 0.97786 1.20937 1.00134 0.96575 0.97124 1.20849 1.02410 1.00109 0.92972 1.21062 0.99533 0.96790 0.97272 1.21089 0.98087 0.94247 0.98475 0.92309 0.93313 0.94191 0.93907 0.92543 0.93080 0.93750 0.94411 0.94984 0.91779 0.94259 0.92023 0.91013 0.94225 0.95313 0.93631 0.88403 0.94946 0.87470 0.87603 0.87626 0.87455 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.67 37.16 0.36 -1.94 16 2 C -0.11 -1.88 5.40 -26.73 -0.14 -2.02 16 3 C -0.09 -1.69 2.32 -90.62 -0.21 -1.90 16 4 H 0.11 2.53 7.30 -51.93 -0.38 2.15 16 5 C -0.14 -2.31 8.71 37.16 0.32 -1.99 16 6 C -0.11 -2.12 4.13 -26.73 -0.11 -2.23 16 7 C 0.18 3.38 2.00 -67.93 -0.14 3.24 16 8 H 0.05 0.89 6.13 -51.93 -0.32 0.57 16 9 C -0.13 -2.39 5.22 -26.73 -0.14 -2.53 16 10 C -0.14 -2.47 8.84 37.16 0.33 -2.14 16 11 N -0.56 -12.03 0.94 -167.02 -0.16 -12.19 16 12 C -0.25 -5.96 8.24 -15.05 -0.12 -6.08 16 13 H 0.06 1.42 6.67 -52.49 -0.35 1.07 16 14 C 0.02 0.49 4.97 -17.43 -0.09 0.40 16 15 N -0.88 -22.65 11.43 55.49 0.63 -22.02 16 16 Si 0.89 20.57 29.60 -169.99 -5.03 15.54 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.18 3.76 5.25 -5.19 -0.03 3.73 16 21 C -0.07 -1.31 4.13 -104.62 -0.43 -1.74 16 22 C -0.12 -2.03 7.70 -39.58 -0.30 -2.34 16 23 C -0.13 -2.04 10.05 -39.59 -0.40 -2.43 16 24 C -0.14 -2.27 10.05 -39.58 -0.40 -2.67 16 25 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 26 C -0.10 -1.95 9.70 -39.59 -0.38 -2.33 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.85 5.96 -51.93 -0.31 0.54 16 33 H 0.04 0.69 6.57 -51.93 -0.34 0.34 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.06 1.37 7.69 -51.93 -0.40 0.97 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.23 6.78 -51.93 -0.35 0.88 16 39 H 0.07 1.47 6.11 -51.92 -0.32 1.15 16 40 H 0.04 0.67 7.24 -51.93 -0.38 0.29 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.10 2.37 5.59 -51.93 -0.29 2.08 16 44 H 0.03 0.67 7.36 -51.93 -0.38 0.29 16 45 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 46 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 48 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 49 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -24.16 373.41 -10.00 -34.16 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.79 Total: 6.44 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -2.28 Total: -27.56 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.48 Total: -34.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -24.16 -10.00 -34.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258796557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.392 kcal (2) G-P(sol) polarization free energy of solvation -24.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds