Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 H 1.09003 * 109.46846 * 304.99709 * 3 2 1 5 5 C 1.53002 * 109.47371 * 64.99805 * 3 2 1 6 6 C 1.52998 * 109.46990 * 185.00093 * 3 2 1 7 7 C 1.52996 * 109.47090 * 175.00143 * 6 3 2 8 8 H 1.09002 * 109.47319 * 57.24310 * 7 6 3 9 9 C 1.52999 * 109.47368 * 177.24541 * 7 6 3 10 10 C 1.52998 * 109.47683 * 182.19013 * 9 7 6 11 11 N 1.46500 * 109.47077 * 297.24383 * 7 6 3 12 12 C 1.36939 * 119.99922 * 295.13839 * 11 7 6 13 13 H 1.08000 * 120.00390 * 319.92245 * 12 11 7 14 14 C 1.38821 * 119.99890 * 139.91906 * 12 11 7 15 15 N 1.31614 * 119.99958 * 340.22010 * 14 12 11 16 16 Si 1.86804 * 119.99937 * 160.21971 * 14 12 11 17 17 H 1.48500 * 109.46854 * 59.99936 * 16 14 12 18 18 H 1.48492 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46941 * 300.00076 * 16 14 12 20 20 C 1.46497 * 120.00205 * 115.13758 * 11 7 6 21 21 C 1.50703 * 109.47091 * 90.00440 * 20 11 7 22 22 C 1.38236 * 119.99741 * 269.72441 * 21 20 11 23 23 C 1.38231 * 120.00059 * 179.76500 * 22 21 20 24 24 C 1.38234 * 120.00023 * 0.51013 * 23 22 21 25 25 C 1.38243 * 119.99736 * 359.74531 * 24 23 22 26 26 C 1.38232 * 120.00115 * 90.00155 * 21 20 11 27 27 H 1.09003 * 109.46763 * 59.99951 * 1 2 3 28 28 H 1.09003 * 109.46755 * 300.00525 * 1 2 3 29 29 H 1.08990 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46443 * 119.99630 * 2 1 3 31 31 H 1.08993 * 109.46666 * 239.99469 * 2 1 3 32 32 H 1.08994 * 109.46858 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47103 * 300.00063 * 5 3 2 34 34 H 1.09000 * 109.47140 * 59.99595 * 5 3 2 35 35 H 1.09008 * 109.46606 * 294.99359 * 6 3 2 36 36 H 1.08997 * 109.47631 * 54.99388 * 6 3 2 37 37 H 1.08996 * 109.47017 * 302.19293 * 9 7 6 38 38 H 1.09003 * 109.46955 * 62.18761 * 9 7 6 39 39 H 1.09008 * 109.46833 * 300.00507 * 10 9 7 40 40 H 1.09001 * 109.46750 * 59.99488 * 10 9 7 41 41 H 1.08999 * 109.47587 * 179.97438 * 10 9 7 42 42 H 0.97000 * 120.00112 * 179.97438 * 15 14 12 43 43 H 1.09002 * 109.47504 * 209.99906 * 20 11 7 44 44 H 1.08997 * 109.47280 * 329.99915 * 20 11 7 45 45 H 1.08005 * 120.00239 * 0.02562 * 22 21 20 46 46 H 1.08001 * 120.00301 * 180.23372 * 23 22 21 47 47 H 1.07997 * 120.00249 * 179.72354 * 24 23 22 48 48 H 1.08002 * 119.99789 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.99872 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6354 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8848 -0.2511 8 1 3.7306 3.4616 0.6113 9 6 5.5936 2.8912 -0.3078 10 6 6.0954 4.3348 -0.3781 11 7 3.5281 3.4829 -1.4761 12 6 3.8961 2.9869 -2.6983 13 1 4.9188 2.6877 -2.8741 14 6 2.9544 2.8685 -3.7114 15 7 1.6714 2.8512 -3.4186 16 14 3.5083 2.7337 -5.4903 17 1 4.3633 1.5304 -5.6527 18 1 2.3189 2.6178 -6.3717 19 1 4.2833 3.9452 -5.8606 20 6 2.5979 4.6117 -1.3936 21 6 3.3738 5.9036 -1.4031 22 6 3.7921 6.4674 -0.2122 23 6 4.5079 7.6499 -0.2211 24 6 4.7963 8.2742 -1.4203 25 6 4.3734 7.7132 -2.6109 26 6 3.6621 6.5279 -2.6022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.9984 3.1543 1.3070 33 1 0.5490 2.1253 1.3969 34 1 2.0699 1.5875 2.1492 35 1 4.0030 0.9835 0.7598 36 1 3.8572 0.8798 -1.0112 37 1 5.9923 2.4111 0.5858 38 1 5.9266 2.3473 -1.1917 39 1 5.6966 4.8150 -1.2719 40 1 5.7622 4.8787 0.5058 41 1 7.1847 4.3394 -0.4181 42 1 1.0134 2.7689 -4.1265 43 1 1.9212 4.5881 -2.2478 44 1 2.0214 4.5408 -0.4713 45 1 3.5633 5.9817 0.7249 46 1 4.8380 8.0884 0.7090 47 1 5.3517 9.2004 -1.4270 48 1 4.5984 8.2012 -3.5477 49 1 3.3317 6.0896 -3.5323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258796557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = 6.839707 kcal Electronic energy + Delta-G solvation = -25072.454461 eV Core-core repulsion = 21998.572760 eV Total energy + Delta-G solvation = -3073.881701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.18048 -38.88820 -36.58460 -34.55730 -33.09105 -31.70616 -31.47832 -30.83353 -28.53784 -27.22992 -26.07536 -24.40643 -23.32656 -23.15958 -21.79090 -21.03298 -20.31594 -18.14946 -17.24101 -16.88145 -16.34022 -15.96610 -15.76180 -15.57737 -15.30285 -15.12013 -14.75979 -14.40073 -14.08337 -14.00311 -13.78406 -13.37848 -13.34701 -13.19382 -12.93603 -12.80167 -12.70021 -12.49401 -12.43386 -12.27880 -12.11659 -12.04306 -11.90365 -11.64066 -11.56641 -11.41832 -11.31203 -11.03227 -10.87648 -10.79131 -10.34403 -9.57338 -9.33396 -8.31242 -7.66552 -5.26727 0.72497 0.75049 1.43756 1.47992 1.51493 2.56696 3.11045 3.40888 3.89575 4.03138 4.20210 4.26028 4.29608 4.33740 4.39323 4.48267 4.50124 4.60010 4.62083 4.72347 4.77014 4.79301 4.84633 4.90157 4.95774 5.04541 5.05331 5.08594 5.18850 5.22314 5.24562 5.27059 5.33053 5.38839 5.39551 5.42574 5.48588 5.60575 5.67721 5.70722 5.76260 5.79366 5.83440 5.87844 5.90791 6.12584 6.16042 6.38278 6.65211 7.34450 8.03840 8.58304 9.25868 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.007368 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.429147 B = 3799.532509 C = 4900.421902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.089 4.089 4 H 0.068 0.932 5 C -0.133 4.133 6 C -0.106 4.106 7 C 0.175 3.825 8 H 0.058 0.942 9 C -0.126 4.126 10 C -0.127 4.127 11 N -0.562 5.562 12 C -0.234 4.234 13 H 0.041 0.959 14 C -0.017 4.017 15 N -0.897 5.897 16 Si 0.925 3.075 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.287 1.287 20 C 0.187 3.813 21 C -0.082 4.082 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.125 4.125 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.245 0.755 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.118 0.882 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.124 0.876 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 4.031 9.694 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.108 4.108 4 H 0.087 0.913 5 C -0.190 4.190 6 C -0.145 4.145 7 C 0.069 3.931 8 H 0.076 0.924 9 C -0.165 4.165 10 C -0.185 4.185 11 N -0.281 5.281 12 C -0.365 4.365 13 H 0.058 0.942 14 C -0.215 4.215 15 N -0.541 5.541 16 Si 0.756 3.244 17 H -0.211 1.211 18 H -0.224 1.224 19 H -0.214 1.214 20 C 0.061 3.939 21 C -0.085 4.085 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.144 4.144 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.136 0.864 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.142 0.858 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.726 3.964 9.596 10.735 hybrid contribution 0.109 -0.368 -1.852 1.892 sum 2.834 3.597 7.744 8.996 Atomic orbital electron populations 1.21717 0.95815 1.01194 1.01213 1.21446 0.96016 0.96865 1.00277 1.21025 0.95560 0.95586 0.98619 0.91322 1.21798 1.00539 0.99886 0.96804 1.21834 0.95590 0.98191 0.98919 1.20612 0.91676 0.92327 0.88524 0.92358 1.21805 0.97521 0.97049 1.00126 1.21597 0.98855 0.96608 1.01393 1.43606 1.52699 1.31001 1.00787 1.18743 0.91586 1.36605 0.89546 0.94156 1.25474 0.95379 1.00496 1.00198 1.70036 0.99950 1.52927 1.31185 0.86024 0.76750 0.77734 0.83915 1.21139 1.22434 1.21368 1.19729 0.91282 0.83033 0.99842 1.21012 0.98123 0.96337 0.93039 1.21053 0.99295 0.96358 0.97040 1.21322 0.98546 0.95466 0.98672 1.21255 1.01299 1.00887 0.92110 1.21270 0.98861 0.95820 0.99078 1.20980 1.00089 0.95949 0.97409 0.94870 0.91852 0.92270 0.91646 0.94773 0.93651 0.93117 0.92238 0.92585 0.95121 0.91723 0.94416 0.93879 0.92855 0.93979 0.94557 0.92011 0.94886 0.86389 0.84126 0.84164 0.85786 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.67 71.99 0.70 -3.62 16 2 C -0.11 -3.61 5.40 30.60 0.17 -3.45 16 3 C -0.09 -3.29 2.32 -10.80 -0.03 -3.32 16 4 H 0.07 3.20 7.30 -2.39 -0.02 3.18 16 5 C -0.13 -4.08 8.71 71.98 0.63 -3.45 16 6 C -0.11 -3.99 4.13 30.59 0.13 -3.86 16 7 C 0.17 6.64 2.00 44.99 0.09 6.73 16 8 H 0.06 2.10 6.13 -2.39 -0.01 2.08 16 9 C -0.13 -4.48 5.22 30.59 0.16 -4.32 16 10 C -0.13 -4.33 8.84 71.98 0.64 -3.69 16 11 N -0.56 -24.86 0.94 -682.34 -0.64 -25.50 16 12 C -0.23 -11.88 8.24 84.04 0.69 -11.19 16 13 H 0.04 2.17 6.67 -2.91 -0.02 2.15 16 14 C -0.02 -0.90 4.97 84.86 0.42 -0.48 16 15 N -0.90 -49.01 11.43 21.65 0.25 -48.77 16 16 Si 0.93 44.25 29.60 68.60 2.03 46.28 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 C 0.19 8.24 5.25 85.63 0.45 8.69 16 21 C -0.08 -3.22 4.13 -19.87 -0.08 -3.30 16 22 C -0.12 -3.85 7.70 22.27 0.17 -3.68 16 23 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.14 -3.81 10.05 22.27 0.22 -3.58 16 25 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 26 C -0.13 -4.99 9.70 22.27 0.22 -4.77 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.72 6.56 -2.39 -0.02 1.71 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.43 5.96 -2.39 -0.01 1.41 16 33 H 0.05 1.48 6.57 -2.39 -0.02 1.46 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.03 1.34 7.69 -2.39 -0.02 1.32 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.51 6.78 -2.39 -0.02 1.49 16 39 H 0.04 1.72 6.11 -2.38 -0.01 1.71 16 40 H 0.05 1.64 7.24 -2.39 -0.02 1.63 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.24 13.39 8.31 -92.71 -0.77 12.62 16 43 H 0.06 3.20 5.59 -2.39 -0.01 3.18 16 44 H 0.03 1.40 7.36 -2.39 -0.02 1.38 16 45 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 47 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 48 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 49 H 0.09 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -55.27 373.41 7.53 -47.73 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.88 Total: 24.80 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 5.02 Total: -44.55 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -0.40 Total: -74.27 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -55.27 7.53 -47.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258796557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.572 kcal (2) G-P(sol) polarization free energy of solvation -55.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds