Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47538 * 2 1 4 4 H 1.09001 * 109.46845 * 305.00064 * 3 2 1 5 5 C 1.53004 * 109.47046 * 64.99818 * 3 2 1 6 6 C 1.52994 * 109.47141 * 184.99765 * 3 2 1 7 7 C 1.53004 * 109.47115 * 174.68127 * 6 3 2 8 8 H 1.08995 * 109.46964 * 56.20973 * 7 6 3 9 9 C 1.53002 * 109.46967 * 296.20878 * 7 6 3 10 10 C 1.53004 * 109.46794 * 177.16813 * 9 7 6 11 11 N 1.46503 * 109.47037 * 176.20739 * 7 6 3 12 12 C 1.36936 * 119.99895 * 65.48642 * 11 7 6 13 13 H 1.07998 * 120.00436 * 34.18384 * 12 11 7 14 14 C 1.38816 * 119.99538 * 213.91512 * 12 11 7 15 15 N 1.31624 * 119.99841 * 206.88218 * 14 12 11 16 16 Si 1.86800 * 120.00133 * 26.88404 * 14 12 11 17 17 H 1.48496 * 109.46929 * 1.22749 * 16 14 12 18 18 H 1.48496 * 109.47055 * 121.23043 * 16 14 12 19 19 H 1.48506 * 109.46962 * 241.23020 * 16 14 12 20 20 C 1.46503 * 119.99999 * 245.47566 * 11 7 6 21 21 C 1.50701 * 109.47377 * 270.00523 * 20 11 7 22 22 C 1.38234 * 119.99865 * 269.72685 * 21 20 11 23 23 C 1.38232 * 119.99862 * 179.76583 * 22 21 20 24 24 C 1.38236 * 119.99996 * 0.50754 * 23 22 21 25 25 C 1.38237 * 119.99922 * 359.74402 * 24 23 22 26 26 C 1.38231 * 119.99763 * 90.00028 * 21 20 11 27 27 H 1.08995 * 109.47475 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47564 * 300.00232 * 1 2 3 29 29 H 1.09007 * 109.46744 * 59.99976 * 1 2 3 30 30 H 1.09001 * 109.47425 * 239.99241 * 2 1 3 31 31 H 1.09005 * 109.47134 * 120.00374 * 2 1 3 32 32 H 1.08996 * 109.46973 * 304.33343 * 5 3 2 33 33 H 1.08997 * 109.46948 * 64.33030 * 5 3 2 34 34 H 1.09002 * 109.46989 * 184.33360 * 5 3 2 35 35 H 1.09001 * 109.47316 * 54.68555 * 6 3 2 36 36 H 1.09004 * 109.47654 * 294.67929 * 6 3 2 37 37 H 1.09000 * 109.47023 * 297.16882 * 9 7 6 38 38 H 1.08994 * 109.47092 * 57.17164 * 9 7 6 39 39 H 1.09006 * 109.46622 * 179.97438 * 10 9 7 40 40 H 1.08998 * 109.46888 * 299.99941 * 10 9 7 41 41 H 1.08994 * 109.47015 * 60.00303 * 10 9 7 42 42 H 0.97000 * 119.99730 * 0.02562 * 15 14 12 43 43 H 1.08998 * 109.46682 * 30.00696 * 20 11 7 44 44 H 1.08998 * 109.46855 * 149.99919 * 20 11 7 45 45 H 1.08001 * 120.00059 * 359.97438 * 22 21 20 46 46 H 1.08000 * 120.00004 * 180.22612 * 23 22 21 47 47 H 1.07996 * 120.00040 * 179.72210 * 24 23 22 48 48 H 1.07994 * 120.00022 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00440 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 6 4.0639 2.8843 -0.2590 8 1 3.7142 3.4702 0.5909 9 6 3.5243 3.4931 -1.5549 10 6 3.9650 4.9550 -1.6537 11 7 5.5286 2.8928 -0.2883 12 6 6.1959 2.3142 -1.3349 13 1 5.7757 2.3499 -2.3291 14 6 7.4151 1.6867 -1.1187 15 7 8.2944 1.6032 -2.0946 16 14 7.8079 0.9609 0.5571 17 1 6.6503 1.1590 1.4659 18 1 8.0831 -0.4914 0.4153 19 1 9.0025 1.6383 1.1223 20 6 6.2795 3.5205 0.8019 21 6 6.5158 4.9731 0.4780 22 6 7.6547 5.3520 -0.2077 23 6 7.8691 6.6839 -0.5091 24 6 6.9497 7.6382 -0.1156 25 6 5.8132 7.2600 0.5746 26 6 5.5963 5.9274 0.8714 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.5549 2.0574 1.4342 33 1 2.1315 1.6343 2.1437 34 1 1.9310 3.1752 1.2754 35 1 3.8573 0.8751 -1.0081 36 1 4.0032 0.9885 0.7623 37 1 3.9148 2.9375 -2.4075 38 1 2.4356 3.4411 -1.5550 39 1 3.5809 5.3886 -2.5771 40 1 3.5746 5.5105 -0.8011 41 1 5.0537 5.0071 -1.6536 42 1 8.0905 1.9804 -2.9646 43 1 5.7092 3.4427 1.7275 44 1 7.2374 3.0144 0.9217 45 1 8.3754 4.6069 -0.5109 46 1 8.7571 6.9795 -1.0480 47 1 7.1193 8.6794 -0.3471 48 1 5.0951 8.0056 0.8824 49 1 4.7084 5.6319 1.4107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258796559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = 17.882830 kcal Electronic energy + Delta-G solvation = -24729.420797 eV Core-core repulsion = 21656.017961 eV Total energy + Delta-G solvation = -3073.402835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.90249 -37.73750 -35.61972 -32.93851 -31.76423 -30.42206 -30.18700 -29.84165 -27.35698 -25.34726 -24.94058 -22.66676 -22.26058 -21.83719 -20.74084 -19.85944 -18.77466 -17.13545 -16.07717 -15.35989 -15.03113 -14.84078 -14.66131 -13.99180 -13.94671 -13.69569 -13.55397 -13.06948 -12.93749 -12.74259 -12.63758 -12.31946 -12.17883 -12.04588 -11.75545 -11.60427 -11.40152 -11.17566 -10.94568 -10.66717 -10.65653 -10.55858 -10.50479 -10.21787 -10.14490 -10.03693 -9.78867 -9.68430 -9.51510 -9.13842 -8.38593 -8.30199 -8.04272 -6.94352 -6.23671 -3.30195 1.96992 2.01489 3.44138 3.54403 3.66338 4.36080 4.59650 4.95559 5.12994 5.16676 5.29615 5.38598 5.44672 5.47012 5.51091 5.56044 5.65242 5.74282 5.75574 5.79039 5.93604 5.99201 6.02316 6.02823 6.07325 6.12476 6.18457 6.20564 6.27344 6.31233 6.37824 6.42436 6.46678 6.52818 6.57951 6.64079 6.68326 6.69832 6.76699 6.91666 7.01224 7.08524 7.13493 7.14635 7.20311 7.40234 7.63687 8.20371 8.52138 9.08991 9.67400 10.26946 11.10529 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.006684 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.898259 B = 4187.873506 C = 5470.219641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.094 4.094 4 H 0.068 0.932 5 C -0.146 4.146 6 C -0.120 4.120 7 C 0.180 3.820 8 H 0.049 0.951 9 C -0.127 4.127 10 C -0.138 4.138 11 N -0.586 5.586 12 C -0.340 4.340 13 H 0.063 0.937 14 C -0.002 4.002 15 N -0.909 5.909 16 Si 1.043 2.957 17 H -0.280 1.280 18 H -0.302 1.302 19 H -0.295 1.295 20 C 0.181 3.819 21 C -0.076 4.076 22 C -0.095 4.095 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.114 4.114 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.029 0.971 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.265 0.735 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 5.156 6.099 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.087 0.913 5 C -0.203 4.203 6 C -0.159 4.159 7 C 0.073 3.927 8 H 0.067 0.933 9 C -0.166 4.166 10 C -0.196 4.196 11 N -0.306 5.306 12 C -0.469 4.469 13 H 0.081 0.919 14 C -0.205 4.205 15 N -0.547 5.547 16 Si 0.875 3.125 17 H -0.206 1.206 18 H -0.231 1.231 19 H -0.222 1.222 20 C 0.056 3.944 21 C -0.079 4.079 22 C -0.114 4.114 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.148 4.148 26 C -0.133 4.133 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.204 4.300 6.936 12.301 hybrid contribution -1.102 0.849 -1.067 1.753 sum -10.305 5.149 5.869 12.929 Atomic orbital electron populations 1.21828 0.96632 1.00898 1.01541 1.21573 0.95026 0.97271 1.01833 1.21264 0.97063 0.95177 0.97786 0.91344 1.21906 1.00196 1.00616 0.97625 1.22050 0.92128 0.99597 1.02126 1.20427 0.84188 0.93148 0.94923 0.93262 1.21866 0.97959 0.96376 1.00435 1.21715 1.03154 0.95955 0.98731 1.44131 0.99681 1.62525 1.24280 1.19922 1.05478 1.33401 0.88069 0.91945 1.26092 0.93120 0.96616 1.04661 1.70878 1.32706 1.46793 1.04316 0.84009 0.75196 0.76412 0.76870 1.20612 1.23061 1.22224 1.20175 0.96077 0.87238 0.90954 1.20968 0.93200 0.97623 0.96125 1.21156 0.97740 0.95450 0.97047 1.21081 0.99202 0.93575 1.00514 1.20907 0.95483 0.98582 1.00814 1.20930 0.97611 0.95923 1.00341 1.20889 0.98778 0.92676 1.00961 0.93390 0.92762 0.93059 0.92146 0.92375 0.93336 0.93084 0.92723 0.91541 0.92755 0.91969 0.93681 0.95182 0.94260 0.91041 0.92482 0.93478 0.93035 0.85959 0.87093 0.87359 0.87350 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 37.15 0.36 -1.29 16 2 C -0.12 -1.54 5.40 -26.73 -0.14 -1.69 16 3 C -0.09 -1.33 2.24 -90.62 -0.20 -1.53 16 4 H 0.07 0.98 6.23 -51.93 -0.32 0.65 16 5 C -0.15 -1.86 8.70 37.16 0.32 -1.54 16 6 C -0.12 -2.13 4.16 -26.73 -0.11 -2.24 16 7 C 0.18 3.36 2.09 -67.93 -0.14 3.22 16 8 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 9 C -0.13 -2.32 5.04 -26.73 -0.13 -2.46 16 10 C -0.14 -2.51 8.89 37.16 0.33 -2.18 16 11 N -0.59 -12.82 1.41 -167.02 -0.24 -13.06 16 12 C -0.34 -8.76 8.75 -15.06 -0.13 -8.90 16 13 H 0.06 1.78 6.70 -52.49 -0.35 1.43 16 14 C 0.00 -0.05 5.24 -17.43 -0.09 -0.14 16 15 N -0.91 -26.88 13.71 55.49 0.76 -26.12 16 16 Si 1.04 25.32 25.56 -169.99 -4.34 20.97 16 17 H -0.28 -6.32 6.42 56.52 0.36 -5.96 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 C 0.18 3.78 4.24 -5.19 -0.02 3.76 16 21 C -0.08 -1.47 4.20 -104.63 -0.44 -1.91 16 22 C -0.10 -1.90 9.70 -39.59 -0.38 -2.29 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.14 -2.17 10.05 -39.58 -0.40 -2.56 16 25 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 26 C -0.11 -1.92 7.79 -39.58 -0.31 -2.23 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.55 6.48 -51.93 -0.34 0.22 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.54 6.37 -51.93 -0.33 0.21 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 35 H 0.07 1.33 7.90 -51.93 -0.41 0.92 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.29 6.67 -51.93 -0.35 0.94 16 38 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.65 7.33 -51.93 -0.38 0.27 16 41 H 0.07 1.51 6.17 -51.93 -0.32 1.19 16 42 H 0.26 7.86 8.73 -40.82 -0.36 7.51 16 43 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 44 H 0.05 1.17 3.41 -51.93 -0.18 0.99 16 45 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 48 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 49 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -27.41 367.94 -9.22 -36.62 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.65 Total: 4.96 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -2.29 Total: -28.92 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.52 Total: -39.18 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -4.34 Total: 20.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.41 -9.22 -36.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258796559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.507 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds