Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47538 * 2 1 4 4 H 1.09001 * 109.46845 * 305.00064 * 3 2 1 5 5 C 1.53004 * 109.47046 * 64.99818 * 3 2 1 6 6 C 1.52994 * 109.47141 * 184.99765 * 3 2 1 7 7 C 1.53004 * 109.47115 * 174.68127 * 6 3 2 8 8 H 1.08995 * 109.46964 * 56.20973 * 7 6 3 9 9 C 1.53002 * 109.46967 * 296.20878 * 7 6 3 10 10 C 1.53004 * 109.46794 * 177.16813 * 9 7 6 11 11 N 1.46503 * 109.47037 * 176.20739 * 7 6 3 12 12 C 1.36936 * 119.99895 * 65.48642 * 11 7 6 13 13 H 1.07998 * 120.00436 * 34.18384 * 12 11 7 14 14 C 1.38816 * 119.99538 * 213.91512 * 12 11 7 15 15 N 1.31624 * 119.99841 * 206.88218 * 14 12 11 16 16 Si 1.86800 * 120.00133 * 26.88404 * 14 12 11 17 17 H 1.48496 * 109.46929 * 1.22749 * 16 14 12 18 18 H 1.48496 * 109.47055 * 121.23043 * 16 14 12 19 19 H 1.48506 * 109.46962 * 241.23020 * 16 14 12 20 20 C 1.46503 * 119.99999 * 245.47566 * 11 7 6 21 21 C 1.50701 * 109.47377 * 270.00523 * 20 11 7 22 22 C 1.38234 * 119.99865 * 269.72685 * 21 20 11 23 23 C 1.38232 * 119.99862 * 179.76583 * 22 21 20 24 24 C 1.38236 * 119.99996 * 0.50754 * 23 22 21 25 25 C 1.38237 * 119.99922 * 359.74402 * 24 23 22 26 26 C 1.38231 * 119.99763 * 90.00028 * 21 20 11 27 27 H 1.08995 * 109.47475 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47564 * 300.00232 * 1 2 3 29 29 H 1.09007 * 109.46744 * 59.99976 * 1 2 3 30 30 H 1.09001 * 109.47425 * 239.99241 * 2 1 3 31 31 H 1.09005 * 109.47134 * 120.00374 * 2 1 3 32 32 H 1.08996 * 109.46973 * 304.33343 * 5 3 2 33 33 H 1.08997 * 109.46948 * 64.33030 * 5 3 2 34 34 H 1.09002 * 109.46989 * 184.33360 * 5 3 2 35 35 H 1.09001 * 109.47316 * 54.68555 * 6 3 2 36 36 H 1.09004 * 109.47654 * 294.67929 * 6 3 2 37 37 H 1.09000 * 109.47023 * 297.16882 * 9 7 6 38 38 H 1.08994 * 109.47092 * 57.17164 * 9 7 6 39 39 H 1.09006 * 109.46622 * 179.97438 * 10 9 7 40 40 H 1.08998 * 109.46888 * 299.99941 * 10 9 7 41 41 H 1.08994 * 109.47015 * 60.00303 * 10 9 7 42 42 H 0.97000 * 119.99730 * 0.02562 * 15 14 12 43 43 H 1.08998 * 109.46682 * 30.00696 * 20 11 7 44 44 H 1.08998 * 109.46855 * 149.99919 * 20 11 7 45 45 H 1.08001 * 120.00059 * 359.97438 * 22 21 20 46 46 H 1.08000 * 120.00004 * 180.22612 * 23 22 21 47 47 H 1.07996 * 120.00040 * 179.72210 * 24 23 22 48 48 H 1.07994 * 120.00022 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00440 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 6 4.0639 2.8843 -0.2590 8 1 3.7142 3.4702 0.5909 9 6 3.5243 3.4931 -1.5549 10 6 3.9650 4.9550 -1.6537 11 7 5.5286 2.8928 -0.2883 12 6 6.1959 2.3142 -1.3349 13 1 5.7757 2.3499 -2.3291 14 6 7.4151 1.6867 -1.1187 15 7 8.2944 1.6032 -2.0946 16 14 7.8079 0.9609 0.5571 17 1 6.6503 1.1590 1.4659 18 1 8.0831 -0.4914 0.4153 19 1 9.0025 1.6383 1.1223 20 6 6.2795 3.5205 0.8019 21 6 6.5158 4.9731 0.4780 22 6 7.6547 5.3520 -0.2077 23 6 7.8691 6.6839 -0.5091 24 6 6.9497 7.6382 -0.1156 25 6 5.8132 7.2600 0.5746 26 6 5.5963 5.9274 0.8714 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.5549 2.0574 1.4342 33 1 2.1315 1.6343 2.1437 34 1 1.9310 3.1752 1.2754 35 1 3.8573 0.8751 -1.0081 36 1 4.0032 0.9885 0.7623 37 1 3.9148 2.9375 -2.4075 38 1 2.4356 3.4411 -1.5550 39 1 3.5809 5.3886 -2.5771 40 1 3.5746 5.5105 -0.8011 41 1 5.0537 5.0071 -1.6536 42 1 8.0905 1.9804 -2.9646 43 1 5.7092 3.4427 1.7275 44 1 7.2374 3.0144 0.9217 45 1 8.3754 4.6069 -0.5109 46 1 8.7571 6.9795 -1.0480 47 1 7.1193 8.6794 -0.3471 48 1 5.0951 8.0056 0.8824 49 1 4.7084 5.6319 1.4107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258796559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = 6.350871 kcal Electronic energy + Delta-G solvation = -24729.920860 eV Core-core repulsion = 21656.017961 eV Total energy + Delta-G solvation = -3073.902899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35141 -39.10294 -37.02811 -34.56745 -33.56336 -31.81889 -31.54427 -31.18729 -28.61282 -27.04883 -26.28400 -24.24397 -23.60996 -23.23634 -22.16886 -21.26880 -20.28508 -18.97908 -17.51642 -16.89195 -16.61102 -16.13977 -16.02325 -15.50569 -15.30410 -15.07799 -15.04628 -14.60407 -14.38020 -14.14637 -14.04089 -13.70097 -13.59278 -13.41397 -13.05343 -12.99447 -12.66292 -12.48828 -12.32904 -12.29829 -12.00278 -11.96635 -11.81252 -11.77490 -11.60316 -11.39482 -11.31637 -11.22929 -11.06809 -10.90736 -10.42879 -9.65228 -9.45718 -8.91427 -8.34445 -5.40771 0.62230 0.65340 1.43670 1.53695 1.69468 2.57323 2.93371 3.24335 3.52249 3.99131 4.03582 4.06834 4.15629 4.20947 4.27478 4.30517 4.37851 4.46013 4.48497 4.55737 4.57312 4.69586 4.73192 4.76416 4.81055 4.87871 4.90354 4.97281 4.99344 5.05911 5.13716 5.18835 5.23107 5.27313 5.28569 5.30367 5.33058 5.38678 5.47818 5.54313 5.62908 5.70364 5.70756 5.72533 5.74500 5.95097 6.05226 6.28870 6.43127 7.04335 7.75427 8.23873 8.93030 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.006684 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.898259 B = 4187.873506 C = 5470.219641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.113 4.113 7 C 0.178 3.822 8 H 0.074 0.926 9 C -0.121 4.121 10 C -0.129 4.129 11 N -0.594 5.594 12 C -0.302 4.302 13 H 0.024 0.976 14 C -0.055 4.055 15 N -0.952 5.952 16 Si 1.083 2.917 17 H -0.251 1.251 18 H -0.311 1.311 19 H -0.296 1.296 20 C 0.175 3.825 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.247 0.753 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.143 0.857 48 H 0.148 0.852 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.742 7.626 8.656 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.200 4.200 6 C -0.153 4.153 7 C 0.072 3.928 8 H 0.092 0.908 9 C -0.160 4.160 10 C -0.186 4.186 11 N -0.315 5.315 12 C -0.433 4.433 13 H 0.042 0.958 14 C -0.251 4.251 15 N -0.594 5.594 16 Si 0.911 3.089 17 H -0.175 1.175 18 H -0.241 1.241 19 H -0.224 1.224 20 C 0.050 3.950 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.139 0.861 47 H 0.161 0.839 48 H 0.166 0.834 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.629 6.795 9.521 17.214 hybrid contribution -0.121 0.214 -1.905 1.921 sum -12.750 7.009 7.617 16.423 Atomic orbital electron populations 1.21783 0.94504 1.01827 1.02240 1.21562 0.96858 0.96261 1.01131 1.21185 0.93887 0.96368 0.99106 0.91178 1.21877 1.01633 1.00320 0.96130 1.21958 0.95176 0.98254 0.99888 1.20615 0.82036 0.94103 0.96016 0.90758 1.21795 0.99515 0.96084 0.98593 1.21606 1.00817 0.95953 1.00246 1.44191 1.01148 1.62793 1.23346 1.19608 1.04630 1.31330 0.87704 0.95793 1.26973 0.93763 0.97732 1.06600 1.70991 1.34141 1.49968 1.04265 0.83500 0.76035 0.74920 0.74447 1.17535 1.24084 1.22352 1.20222 0.95203 0.88244 0.91281 1.20768 0.94026 0.97252 0.97308 1.21001 0.98074 0.96077 0.99316 1.21257 1.00438 0.92826 1.00729 1.21314 0.94622 0.99725 0.99298 1.21378 0.97823 0.95991 0.98629 1.21090 0.98545 0.92854 1.00508 0.92478 0.91538 0.92794 0.93648 0.92451 0.91174 0.93189 0.92447 0.95034 0.93828 0.95729 0.90745 0.94277 0.91918 0.94542 0.94383 0.90878 0.95352 0.90156 0.86097 0.83913 0.83428 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.67 71.98 0.70 -2.04 16 2 C -0.12 -2.91 5.40 30.59 0.17 -2.75 16 3 C -0.09 -2.26 2.24 -10.79 -0.02 -2.28 16 4 H 0.07 1.82 6.23 -2.39 -0.01 1.80 16 5 C -0.14 -3.06 8.70 71.98 0.63 -2.44 16 6 C -0.11 -3.97 4.16 30.59 0.13 -3.85 16 7 C 0.18 6.43 2.09 44.99 0.09 6.52 16 8 H 0.07 2.36 6.20 -2.39 -0.01 2.34 16 9 C -0.12 -4.30 5.04 30.60 0.15 -4.14 16 10 C -0.13 -4.43 8.89 71.98 0.64 -3.79 16 11 N -0.59 -26.23 1.41 -682.32 -0.96 -27.20 16 12 C -0.30 -16.46 8.75 84.03 0.74 -15.72 16 13 H 0.02 1.49 6.70 -2.91 -0.02 1.47 16 14 C -0.05 -3.16 5.24 84.86 0.45 -2.71 16 15 N -0.95 -60.40 13.71 21.65 0.30 -60.11 16 16 Si 1.08 53.48 25.56 68.60 1.75 55.23 16 17 H -0.25 -11.02 6.42 99.48 0.64 -10.38 16 18 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 C 0.18 7.24 4.24 85.63 0.36 7.60 16 21 C -0.09 -3.45 4.20 -19.87 -0.08 -3.54 16 22 C -0.13 -5.18 9.70 22.27 0.22 -4.96 16 23 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 24 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 25 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 26 C -0.11 -3.35 7.79 22.27 0.17 -3.18 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.09 6.48 -2.39 -0.02 1.08 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 1.23 6.37 -2.39 -0.02 1.22 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.21 6.70 -2.39 -0.02 1.19 16 35 H 0.03 1.30 7.90 -2.39 -0.02 1.28 16 36 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.02 1.04 6.67 -2.39 -0.02 1.02 16 38 H 0.07 2.20 6.29 -2.39 -0.02 2.19 16 39 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 1.84 7.33 -2.39 -0.02 1.82 16 41 H 0.04 1.51 6.17 -2.39 -0.01 1.50 16 42 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 43 H 0.07 2.59 7.91 -2.39 -0.02 2.58 16 44 H 0.03 1.31 3.41 -2.39 -0.01 1.30 16 45 H 0.08 3.91 8.06 -2.91 -0.02 3.89 16 46 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 47 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 48 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 49 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -65.14 367.94 6.87 -58.26 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.79 Total: 21.72 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 5.00 Total: -47.91 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -0.67 Total: -87.30 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 1.75 Total: 55.23 kcal Total: -65.14 6.87 -58.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258796559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.615 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds