Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46605 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00408 * 2 1 3 5 5 H 1.09001 * 109.47101 * 181.76040 * 4 2 1 6 6 C 1.50697 * 109.47672 * 61.75759 * 4 2 1 7 7 C 1.38237 * 119.99500 * 279.72571 * 6 4 2 8 8 C 1.38243 * 119.99820 * 179.80877 * 7 6 4 9 9 C 1.38236 * 119.99724 * 0.39661 * 8 7 6 10 10 C 1.38234 * 119.99928 * 359.86124 * 9 8 7 11 11 C 1.38229 * 120.00421 * 99.99947 * 6 4 2 12 12 N 1.46905 * 109.46660 * 301.75226 * 4 2 1 13 13 C 1.46906 * 110.99726 * 169.21707 * 12 4 2 14 14 C 1.46900 * 111.00110 * 293.16910 * 12 4 2 15 15 C 1.52996 * 109.46806 * 89.28952 * 14 12 4 16 16 H 1.09002 * 109.47083 * 305.34076 * 15 14 12 17 17 C 1.52992 * 109.47698 * 65.34255 * 15 14 12 18 18 C 1.52999 * 109.46914 * 185.34147 * 15 14 12 19 19 C 1.50702 * 109.47434 * 174.99308 * 18 15 14 20 20 H 1.08004 * 119.99827 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00591 * 179.97438 * 19 18 15 22 22 N 1.31523 * 119.99648 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00455 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47452 * 89.99817 * 23 21 19 25 25 H 1.48504 * 109.46953 * 210.00214 * 23 21 19 26 26 H 1.48498 * 109.46735 * 329.99900 * 23 21 19 27 27 H 1.09000 * 109.47037 * 53.94751 * 1 2 3 28 28 H 1.08994 * 109.46996 * 173.94799 * 1 2 3 29 29 H 1.09003 * 109.47179 * 293.95051 * 1 2 3 30 30 H 1.08996 * 109.47075 * 119.99397 * 2 1 3 31 31 H 1.08996 * 109.47234 * 65.13998 * 3 2 1 32 32 H 1.09001 * 109.46376 * 185.14191 * 3 2 1 33 33 H 1.08999 * 109.46986 * 305.13021 * 3 2 1 34 34 H 1.08000 * 120.00475 * 0.02562 * 7 6 4 35 35 H 1.07991 * 120.00277 * 180.23501 * 8 7 6 36 36 H 1.07994 * 119.99740 * 179.83233 * 9 8 7 37 37 H 1.08005 * 119.99813 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.99683 * 359.97438 * 11 6 4 39 39 H 1.08999 * 109.47230 * 64.73204 * 13 12 4 40 40 H 1.08995 * 109.46912 * 184.73809 * 13 12 4 41 41 H 1.09000 * 109.46976 * 304.73433 * 13 12 4 42 42 H 1.09006 * 109.46572 * 209.28137 * 14 12 4 43 43 H 1.08991 * 109.47426 * 329.28434 * 14 12 4 44 44 H 1.08998 * 109.47470 * 65.29959 * 17 15 14 45 45 H 1.08999 * 109.47788 * 185.30339 * 17 15 14 46 46 H 1.09007 * 109.46865 * 305.30114 * 17 15 14 47 47 H 1.08998 * 109.47558 * 294.99642 * 18 15 14 48 48 H 1.09006 * 109.47133 * 54.99560 * 18 15 14 49 49 H 0.96998 * 119.99646 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 3.1295 -0.7486 -1.2336 6 6 1.5736 0.0140 -2.4793 7 6 0.2860 -0.1698 -2.9476 8 6 -0.1432 0.5076 -4.0737 9 6 0.7179 1.3623 -4.7362 10 6 2.0072 1.5418 -4.2710 11 6 2.4351 0.8675 -3.1427 12 7 1.5160 -2.0934 -1.2706 13 6 1.7686 -2.7332 -2.5687 14 6 2.0802 -2.8895 -0.1726 15 6 1.1945 -2.7484 1.0670 16 1 1.0722 -1.6924 1.3078 17 6 -0.1754 -3.3700 0.7887 18 6 1.8507 -3.4678 2.2472 19 6 1.0421 -3.2259 3.4956 20 1 0.1491 -2.6199 3.4516 21 6 1.4414 -3.7789 4.6938 22 7 2.5285 -4.5172 4.7472 23 14 0.4387 -3.4795 6.2411 24 1 -0.5894 -4.5423 6.3781 25 1 1.3357 -3.5029 7.4244 26 1 -0.2272 -2.1553 6.1508 27 1 -0.3633 0.6048 -0.8308 28 1 -0.3633 -1.0219 -0.1083 29 1 -0.3634 0.4172 0.9392 30 1 1.8934 -0.5137 0.8900 31 1 1.7537 1.9292 0.9324 32 1 3.1260 1.4439 -0.0921 33 1 1.6035 1.9822 -0.8405 34 1 -0.3859 -0.8397 -2.4317 35 1 -1.1503 0.3670 -4.4373 36 1 0.3835 1.8893 -5.6175 37 1 2.6801 2.2093 -4.7889 38 1 3.4423 1.0079 -2.7791 39 1 2.8430 -2.8422 -2.7171 40 1 1.2977 -3.7160 -2.5870 41 1 1.3526 -2.1161 -3.3650 42 1 2.1252 -3.9374 -0.4695 43 1 3.0845 -2.5331 0.0559 44 1 -0.0637 -4.4441 0.6406 45 1 -0.8365 -3.1868 1.6357 46 1 -0.6021 -2.9220 -0.1088 47 1 1.8923 -4.5377 2.0429 48 1 2.8616 -3.0855 2.3893 49 1 2.8093 -4.9066 5.5901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308566237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = 16.820588 kcal Electronic energy + Delta-G solvation = -24467.405315 eV Core-core repulsion = 21393.956418 eV Total energy + Delta-G solvation = -3073.448898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24365 -37.83261 -34.88558 -33.95204 -32.11326 -30.99910 -30.55033 -27.21219 -26.97741 -26.69406 -25.87819 -23.54135 -22.51326 -21.90687 -21.49165 -19.25578 -18.85126 -16.76204 -16.30088 -15.76474 -15.35742 -15.22369 -14.68232 -14.28139 -13.99188 -13.89212 -13.47106 -13.32322 -12.95787 -12.75592 -12.52768 -12.48402 -12.23326 -12.14896 -11.78099 -11.59935 -11.45349 -11.20133 -11.04304 -10.91780 -10.81018 -10.76422 -10.64377 -10.50968 -10.25127 -10.22306 -10.12603 -9.32358 -8.96997 -8.90471 -8.86130 -8.59732 -8.28304 -7.95728 -5.94008 -3.94589 1.35899 1.41913 3.35094 3.41485 3.44731 3.77953 4.16937 4.51551 4.72219 4.91585 4.97894 5.12079 5.21588 5.28869 5.39866 5.42332 5.48727 5.55038 5.58736 5.62421 5.73563 5.77067 5.91165 5.96389 6.02418 6.05620 6.07438 6.10804 6.20546 6.23037 6.26483 6.40855 6.43738 6.46676 6.52521 6.54810 6.62925 6.68041 6.78060 6.90294 7.01709 7.13489 7.23700 7.29116 7.43828 7.51519 7.75031 7.91881 8.07432 8.51744 9.12260 9.68734 11.17573 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.003903 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.774077 B = 7172.040964 C = 7429.446536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.146 4.146 4 C 0.129 3.871 5 H 0.044 0.956 6 C -0.064 4.064 7 C -0.092 4.092 8 C -0.129 4.129 9 C -0.128 4.128 10 C -0.126 4.126 11 C -0.118 4.118 12 N -0.529 5.529 13 C 0.020 3.980 14 C 0.059 3.941 15 C -0.092 4.092 16 H 0.077 0.923 17 C -0.122 4.122 18 C 0.026 3.974 19 C -0.508 4.508 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.274 1.274 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.013 0.987 48 H 0.010 0.990 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 10.603 -18.094 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.203 4.203 4 C 0.021 3.979 5 H 0.061 0.939 6 C -0.064 4.064 7 C -0.110 4.110 8 C -0.147 4.147 9 C -0.146 4.146 10 C -0.144 4.144 11 C -0.137 4.137 12 N -0.252 5.252 13 C -0.129 4.129 14 C -0.068 4.068 15 C -0.110 4.110 16 H 0.095 0.905 17 C -0.180 4.180 18 C -0.011 4.011 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.199 1.199 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.031 0.969 48 H 0.029 0.971 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.378 10.510 -17.906 20.898 hybrid contribution 0.546 0.021 0.795 0.964 sum -1.832 10.530 -17.111 20.175 Atomic orbital electron populations 1.22003 0.94533 1.03593 1.00360 1.21362 0.97306 0.95120 0.97360 1.21867 1.00376 0.96511 1.01577 1.20698 0.96087 0.88584 0.92572 0.93860 1.19816 0.94210 0.96732 0.95638 1.21201 0.95726 0.98647 0.95466 1.21180 0.99570 0.97593 0.96363 1.21079 0.94182 0.99293 1.00062 1.21028 0.96215 1.00198 0.96930 1.21020 0.99452 0.97450 0.95739 1.62054 1.58971 1.01086 1.03104 1.22505 0.98668 0.99677 0.92020 1.22376 0.96486 0.96383 0.91537 1.21562 0.94733 1.01450 0.93285 0.90465 1.21610 0.97411 0.99154 0.99796 1.19143 0.95396 0.95290 0.91314 1.21233 1.09800 1.30617 0.93004 0.92596 1.25014 0.95130 0.95463 0.98951 1.69972 1.23656 1.34139 1.26023 0.86666 0.80060 0.78596 0.83120 1.20789 1.21394 1.19897 0.93432 0.89888 0.93580 0.88701 0.92617 0.93292 0.92901 0.84778 0.86432 0.86696 0.86586 0.86587 0.96384 0.91596 0.91276 0.91872 0.94687 0.94504 0.93109 0.93696 0.96904 0.97131 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 6.95 37.16 0.26 -1.84 16 2 C -0.09 -1.32 2.14 -90.62 -0.19 -1.52 16 3 C -0.15 -1.83 8.58 37.16 0.32 -1.51 16 4 C 0.13 1.74 1.53 -68.87 -0.11 1.63 16 5 H 0.04 0.61 7.74 -51.93 -0.40 0.21 16 6 C -0.06 -0.77 2.55 -104.63 -0.27 -1.03 16 7 C -0.09 -1.08 5.46 -39.58 -0.22 -1.29 16 8 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 9 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 10 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 11 C -0.12 -1.31 8.84 -39.59 -0.35 -1.66 16 12 N -0.53 -7.53 2.42 -236.29 -0.57 -8.10 16 13 C 0.02 0.25 8.88 60.07 0.53 0.78 16 14 C 0.06 1.01 4.25 -3.83 -0.02 0.99 16 15 C -0.09 -1.81 1.61 -90.63 -0.15 -1.96 16 16 H 0.08 1.53 3.67 -51.93 -0.19 1.34 16 17 C -0.12 -2.31 8.25 37.15 0.31 -2.01 16 18 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 19 C -0.51 -14.10 8.47 -34.44 -0.29 -14.39 16 20 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 23 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.05 0.62 6.11 -51.93 -0.32 0.30 16 28 H 0.08 1.26 4.33 -51.93 -0.22 1.03 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.60 5.32 -51.93 -0.28 1.32 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.64 6.96 -51.93 -0.36 0.28 16 34 H 0.13 1.65 6.87 -52.49 -0.36 1.29 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.07 0.83 5.38 -51.93 -0.28 0.56 16 42 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 43 H 0.03 0.62 7.62 -51.93 -0.40 0.22 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 1.02 7.11 -51.93 -0.37 0.65 16 46 H 0.04 0.75 6.27 -51.92 -0.33 0.42 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -29.06 361.84 -9.46 -38.52 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.48 Total: 0.53 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -1.58 Total: -26.83 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.17 Total: -34.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.06 -9.46 -38.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308566237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.343 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds