Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46605 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00408 * 2 1 3 5 5 H 1.09001 * 109.47101 * 181.76040 * 4 2 1 6 6 C 1.50697 * 109.47672 * 61.75759 * 4 2 1 7 7 C 1.38237 * 119.99500 * 279.72571 * 6 4 2 8 8 C 1.38243 * 119.99820 * 179.80877 * 7 6 4 9 9 C 1.38236 * 119.99724 * 0.39661 * 8 7 6 10 10 C 1.38234 * 119.99928 * 359.86124 * 9 8 7 11 11 C 1.38229 * 120.00421 * 99.99947 * 6 4 2 12 12 N 1.46905 * 109.46660 * 301.75226 * 4 2 1 13 13 C 1.46906 * 110.99726 * 169.21707 * 12 4 2 14 14 C 1.46900 * 111.00110 * 293.16910 * 12 4 2 15 15 C 1.52996 * 109.46806 * 89.28952 * 14 12 4 16 16 H 1.09002 * 109.47083 * 305.34076 * 15 14 12 17 17 C 1.52992 * 109.47698 * 65.34255 * 15 14 12 18 18 C 1.52999 * 109.46914 * 185.34147 * 15 14 12 19 19 C 1.50702 * 109.47434 * 174.99308 * 18 15 14 20 20 H 1.08004 * 119.99827 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00591 * 179.97438 * 19 18 15 22 22 N 1.31523 * 119.99648 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00455 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47452 * 89.99817 * 23 21 19 25 25 H 1.48504 * 109.46953 * 210.00214 * 23 21 19 26 26 H 1.48498 * 109.46735 * 329.99900 * 23 21 19 27 27 H 1.09000 * 109.47037 * 53.94751 * 1 2 3 28 28 H 1.08994 * 109.46996 * 173.94799 * 1 2 3 29 29 H 1.09003 * 109.47179 * 293.95051 * 1 2 3 30 30 H 1.08996 * 109.47075 * 119.99397 * 2 1 3 31 31 H 1.08996 * 109.47234 * 65.13998 * 3 2 1 32 32 H 1.09001 * 109.46376 * 185.14191 * 3 2 1 33 33 H 1.08999 * 109.46986 * 305.13021 * 3 2 1 34 34 H 1.08000 * 120.00475 * 0.02562 * 7 6 4 35 35 H 1.07991 * 120.00277 * 180.23501 * 8 7 6 36 36 H 1.07994 * 119.99740 * 179.83233 * 9 8 7 37 37 H 1.08005 * 119.99813 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.99683 * 359.97438 * 11 6 4 39 39 H 1.08999 * 109.47230 * 64.73204 * 13 12 4 40 40 H 1.08995 * 109.46912 * 184.73809 * 13 12 4 41 41 H 1.09000 * 109.46976 * 304.73433 * 13 12 4 42 42 H 1.09006 * 109.46572 * 209.28137 * 14 12 4 43 43 H 1.08991 * 109.47426 * 329.28434 * 14 12 4 44 44 H 1.08998 * 109.47470 * 65.29959 * 17 15 14 45 45 H 1.08999 * 109.47788 * 185.30339 * 17 15 14 46 46 H 1.09007 * 109.46865 * 305.30114 * 17 15 14 47 47 H 1.08998 * 109.47558 * 294.99642 * 18 15 14 48 48 H 1.09006 * 109.47133 * 54.99560 * 18 15 14 49 49 H 0.96998 * 119.99646 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 3.1295 -0.7486 -1.2336 6 6 1.5736 0.0140 -2.4793 7 6 0.2860 -0.1698 -2.9476 8 6 -0.1432 0.5076 -4.0737 9 6 0.7179 1.3623 -4.7362 10 6 2.0072 1.5418 -4.2710 11 6 2.4351 0.8675 -3.1427 12 7 1.5160 -2.0934 -1.2706 13 6 1.7686 -2.7332 -2.5687 14 6 2.0802 -2.8895 -0.1726 15 6 1.1945 -2.7484 1.0670 16 1 1.0722 -1.6924 1.3078 17 6 -0.1754 -3.3700 0.7887 18 6 1.8507 -3.4678 2.2472 19 6 1.0421 -3.2259 3.4956 20 1 0.1491 -2.6199 3.4516 21 6 1.4414 -3.7789 4.6938 22 7 2.5285 -4.5172 4.7472 23 14 0.4387 -3.4795 6.2411 24 1 -0.5894 -4.5423 6.3781 25 1 1.3357 -3.5029 7.4244 26 1 -0.2272 -2.1553 6.1508 27 1 -0.3633 0.6048 -0.8308 28 1 -0.3633 -1.0219 -0.1083 29 1 -0.3634 0.4172 0.9392 30 1 1.8934 -0.5137 0.8900 31 1 1.7537 1.9292 0.9324 32 1 3.1260 1.4439 -0.0921 33 1 1.6035 1.9822 -0.8405 34 1 -0.3859 -0.8397 -2.4317 35 1 -1.1503 0.3670 -4.4373 36 1 0.3835 1.8893 -5.6175 37 1 2.6801 2.2093 -4.7889 38 1 3.4423 1.0079 -2.7791 39 1 2.8430 -2.8422 -2.7171 40 1 1.2977 -3.7160 -2.5870 41 1 1.3526 -2.1161 -3.3650 42 1 2.1252 -3.9374 -0.4695 43 1 3.0845 -2.5331 0.0559 44 1 -0.0637 -4.4441 0.6406 45 1 -0.8365 -3.1868 1.6357 46 1 -0.6021 -2.9220 -0.1088 47 1 1.8923 -4.5377 2.0429 48 1 2.8616 -3.0855 2.3893 49 1 2.8093 -4.9066 5.5901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308566237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = 4.021662 kcal Electronic energy + Delta-G solvation = -24467.960318 eV Core-core repulsion = 21393.956418 eV Total energy + Delta-G solvation = -3074.003901 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25324 -38.91849 -36.43896 -35.26975 -34.05646 -31.81851 -31.54291 -29.02003 -28.14659 -27.90525 -27.19149 -25.29194 -23.46750 -23.03890 -22.61835 -20.63419 -20.17787 -18.43231 -17.68099 -16.84983 -16.59538 -16.41364 -16.17928 -15.57911 -15.21132 -14.97291 -14.84910 -14.34197 -14.25337 -14.07774 -13.82537 -13.76080 -13.45671 -13.24986 -13.22588 -12.85395 -12.83273 -12.73216 -12.64291 -12.39520 -12.25443 -12.07008 -11.94352 -11.78721 -11.70674 -11.65169 -11.41418 -11.11847 -10.85951 -10.64641 -10.45875 -9.67074 -9.44504 -9.17411 -8.14789 -6.23099 0.54323 0.61923 1.40588 1.41303 1.52217 2.43389 2.90012 3.06568 3.18801 3.72461 4.05266 4.10032 4.12869 4.25803 4.27895 4.36730 4.38656 4.47296 4.49275 4.60637 4.62662 4.68267 4.75768 4.83060 4.85301 4.90055 4.96404 4.98930 5.06116 5.09716 5.11798 5.16413 5.22456 5.28990 5.32433 5.34753 5.48507 5.53743 5.55430 5.63532 5.67806 5.72672 5.74285 5.79656 5.88774 5.99024 6.16235 6.23669 6.29925 6.37574 6.93422 7.45002 8.97328 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.003903 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.774077 B = 7172.040964 C = 7429.446536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.138 4.138 4 C 0.133 3.867 5 H 0.035 0.965 6 C -0.073 4.073 7 C -0.102 4.102 8 C -0.131 4.131 9 C -0.127 4.127 10 C -0.127 4.127 11 C -0.127 4.127 12 N -0.525 5.525 13 C 0.023 3.977 14 C 0.071 3.929 15 C -0.081 4.081 16 H 0.080 0.920 17 C -0.112 4.112 18 C 0.033 3.967 19 C -0.521 4.521 20 H 0.060 0.940 21 C -0.002 4.002 22 N -0.937 5.937 23 Si 0.957 3.043 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.263 1.263 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.018 0.982 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.029 0.971 45 H 0.035 0.965 46 H 0.070 0.930 47 H -0.015 1.015 48 H -0.019 1.019 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 12.285 -19.792 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.196 4.196 4 C 0.025 3.975 5 H 0.053 0.947 6 C -0.073 4.073 7 C -0.120 4.120 8 C -0.149 4.149 9 C -0.145 4.145 10 C -0.144 4.144 11 C -0.145 4.145 12 N -0.248 5.248 13 C -0.125 4.125 14 C -0.057 4.057 15 C -0.099 4.099 16 H 0.098 0.902 17 C -0.169 4.169 18 C -0.005 4.005 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.199 4.199 22 N -0.578 5.578 23 Si 0.782 3.218 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.187 1.187 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.036 0.964 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.003 0.997 48 H 0.000 1.000 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.685 12.201 -19.622 23.398 hybrid contribution 0.980 -0.473 1.247 1.655 sum -2.706 11.727 -18.374 21.965 Atomic orbital electron populations 1.21922 0.94309 1.03050 1.00489 1.21289 0.97439 0.96001 0.96440 1.21794 1.00675 0.95294 1.01852 1.20622 0.95523 0.88068 0.93293 0.94727 1.19630 0.94814 0.97551 0.95326 1.21168 0.95405 0.99204 0.96253 1.21417 1.00588 0.97172 0.95756 1.21413 0.93868 0.98713 1.00501 1.21316 0.96805 0.99949 0.96378 1.21147 0.99607 0.97499 0.96249 1.61965 1.58580 1.01304 1.02985 1.22523 0.98833 0.99985 0.91185 1.22084 0.95271 0.96773 0.91555 1.21371 0.95303 1.00769 0.92500 0.90227 1.21504 0.96380 0.98744 1.00282 1.19032 0.94199 0.93932 0.93311 1.21618 1.09995 1.30300 0.94028 0.92159 1.25922 0.96240 0.95201 1.02572 1.70110 1.25421 1.35291 1.26972 0.85565 0.78504 0.79006 0.78722 1.19975 1.21062 1.18711 0.92115 0.90969 0.94277 0.91908 0.92720 0.92841 0.92032 0.85645 0.84683 0.84283 0.84470 0.86182 0.96384 0.91163 0.90087 0.92072 0.95900 0.95230 0.94623 0.91100 0.99702 1.00040 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 6.95 71.98 0.50 -3.39 16 2 C -0.09 -2.64 2.14 -10.79 -0.02 -2.67 16 3 C -0.14 -3.38 8.58 71.98 0.62 -2.76 16 4 C 0.13 3.53 1.53 44.17 0.07 3.60 16 5 H 0.03 0.98 7.74 -2.39 -0.02 0.96 16 6 C -0.07 -1.64 2.55 -19.87 -0.05 -1.69 16 7 C -0.10 -2.17 5.46 22.27 0.12 -2.05 16 8 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 9 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 10 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 11 C -0.13 -2.54 8.84 22.27 0.20 -2.34 16 12 N -0.53 -14.76 2.42 -901.47 -2.18 -16.93 16 13 C 0.02 0.55 8.88 127.69 1.13 1.68 16 14 C 0.07 2.48 4.25 86.30 0.37 2.84 16 15 C -0.08 -3.29 1.61 -10.80 -0.02 -3.31 16 16 H 0.08 3.25 3.67 -2.39 -0.01 3.24 16 17 C -0.11 -4.25 8.25 71.98 0.59 -3.66 16 18 C 0.03 1.74 4.45 29.85 0.13 1.87 16 19 C -0.52 -29.65 8.47 25.60 0.22 -29.43 16 20 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 21 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 22 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 23 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 H 0.06 1.50 6.11 -2.39 -0.01 1.49 16 28 H 0.07 2.13 4.33 -2.39 -0.01 2.12 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 2.19 5.32 -2.39 -0.01 2.18 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.39 6.96 -2.39 -0.02 1.38 16 34 H 0.13 2.87 6.87 -2.91 -0.02 2.85 16 35 H 0.14 1.86 8.06 -2.92 -0.02 1.84 16 36 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.12 2.25 8.04 -2.91 -0.02 2.22 16 39 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 41 H 0.08 1.81 5.38 -2.39 -0.01 1.80 16 42 H 0.06 2.14 7.70 -2.38 -0.02 2.12 16 43 H 0.02 0.84 7.62 -2.39 -0.02 0.82 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.03 1.43 7.11 -2.39 -0.02 1.42 16 46 H 0.07 2.31 6.27 -2.38 -0.01 2.29 16 47 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 48 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 49 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -63.36 361.84 6.02 -57.34 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.90 Total: 17.01 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 4.99 Total: -46.78 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.89 Total: -74.59 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -63.36 6.02 -57.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308566237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.359 kcal (2) G-P(sol) polarization free energy of solvation -63.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds