Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46995 * 2 1 4 4 C 1.53000 * 109.47172 * 120.00010 * 2 1 3 5 5 H 1.09005 * 109.46997 * 294.24550 * 4 2 1 6 6 C 1.50700 * 109.47468 * 54.24539 * 4 2 1 7 7 C 1.38234 * 119.99483 * 90.63113 * 6 4 2 8 8 C 1.38240 * 119.99410 * 179.78842 * 7 6 4 9 9 C 1.38235 * 119.99927 * 0.44686 * 8 7 6 10 10 C 1.38229 * 120.00304 * 359.81073 * 9 8 7 11 11 C 1.38230 * 119.99947 * 270.90997 * 6 4 2 12 12 N 1.46895 * 109.47398 * 174.24905 * 4 2 1 13 13 C 1.46907 * 110.99841 * 325.25058 * 12 4 2 14 14 C 1.46904 * 111.00342 * 89.19840 * 12 4 2 15 15 C 1.52999 * 109.47020 * 77.30946 * 14 12 4 16 16 H 1.09002 * 109.46677 * 304.17413 * 15 14 12 17 17 C 1.52990 * 109.47372 * 64.17318 * 15 14 12 18 18 C 1.52993 * 109.47029 * 184.17801 * 15 14 12 19 19 C 1.50703 * 109.47321 * 174.99772 * 18 15 14 20 20 H 1.08005 * 119.99792 * 0.02562 * 19 18 15 21 21 C 1.37868 * 120.00537 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00537 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47097 * 89.99971 * 23 21 19 25 25 H 1.48499 * 109.47304 * 210.00550 * 23 21 19 26 26 H 1.48508 * 109.46692 * 330.00049 * 23 21 19 27 27 H 1.09000 * 109.47104 * 299.99914 * 1 2 3 28 28 H 1.08994 * 109.47101 * 60.00083 * 1 2 3 29 29 H 1.09001 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47104 * 240.00086 * 2 1 3 31 31 H 1.09004 * 109.47286 * 186.40712 * 3 2 1 32 32 H 1.09002 * 109.47390 * 306.40585 * 3 2 1 33 33 H 1.09000 * 109.47481 * 66.41273 * 3 2 1 34 34 H 1.07995 * 120.00687 * 0.02562 * 7 6 4 35 35 H 1.07998 * 119.99785 * 180.27410 * 8 7 6 36 36 H 1.08003 * 119.99639 * 179.82984 * 9 8 7 37 37 H 1.07998 * 120.00104 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.00562 * 359.97438 * 11 6 4 39 39 H 1.09003 * 109.46920 * 193.10149 * 13 12 4 40 40 H 1.09000 * 109.46363 * 313.09702 * 13 12 4 41 41 H 1.08996 * 109.47251 * 73.09827 * 13 12 4 42 42 H 1.09007 * 109.47095 * 317.30950 * 14 12 4 43 43 H 1.09002 * 109.47180 * 197.30875 * 14 12 4 44 44 H 1.09007 * 109.47481 * 295.13617 * 17 15 14 45 45 H 1.08997 * 109.47150 * 55.13460 * 17 15 14 46 46 H 1.08996 * 109.47660 * 175.13725 * 17 15 14 47 47 H 1.09000 * 109.47277 * 294.99165 * 18 15 14 48 48 H 1.09003 * 109.47481 * 54.99705 * 18 15 14 49 49 H 0.97006 * 120.00263 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7633 -0.1513 2.1363 6 6 1.4248 -2.0950 1.3226 7 6 2.0652 -3.1711 0.7372 8 6 1.5030 -4.4321 0.8083 9 6 0.2960 -4.6151 1.4568 10 6 -0.3469 -3.5380 2.0375 11 6 0.2174 -2.2778 1.9702 12 7 3.5024 -0.8426 1.1819 13 6 3.9509 -1.0422 -0.2027 14 6 4.1562 0.3274 1.7834 15 6 4.1033 0.2134 3.3082 16 1 3.0679 0.0961 3.6281 17 6 4.9166 -1.0022 3.7572 18 6 4.6904 1.4796 3.9349 19 6 4.5269 1.4214 5.4319 20 1 4.0522 0.5665 5.8905 21 6 4.9843 2.4589 6.2163 22 7 5.5629 3.4997 5.6580 23 14 4.7823 2.3865 8.0719 24 1 5.9730 1.7351 8.6744 25 1 4.6468 3.7642 8.6092 26 1 3.5664 1.6026 8.4072 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1240 1.4447 -0.1147 32 1 1.5861 1.9884 -0.8271 33 1 1.7735 1.9222 0.9418 34 1 3.0066 -3.0276 0.2277 35 1 2.0055 -5.2736 0.3549 36 1 -0.1445 -5.5997 1.5099 37 1 -1.2902 -3.6809 2.5437 38 1 -0.2849 -1.4363 2.4240 39 1 4.9940 -1.3586 -0.2047 40 1 3.3377 -1.8090 -0.6761 41 1 3.8537 -0.1073 -0.7545 42 1 3.6394 1.2341 1.4687 43 1 5.1956 0.3701 1.4580 44 1 4.4479 -1.9119 3.3816 45 1 5.9302 -0.9267 3.3638 46 1 4.9509 -1.0344 4.8462 47 1 5.7497 1.5499 3.6877 48 1 4.1677 2.3535 3.5461 49 1 5.8844 4.2299 6.2097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308566239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = 19.375460 kcal Electronic energy + Delta-G solvation = -24261.444701 eV Core-core repulsion = 21188.106591 eV Total energy + Delta-G solvation = -3073.338110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24375 -37.98749 -35.26820 -33.36993 -31.94592 -31.24353 -30.67748 -27.38262 -27.06954 -26.74323 -26.05812 -23.59460 -22.43699 -21.80553 -21.39611 -19.63380 -18.65736 -16.85926 -16.29894 -15.90730 -15.43389 -15.05842 -14.81727 -14.40820 -14.29477 -13.76950 -13.60357 -13.30727 -12.98418 -12.58629 -12.46026 -12.30492 -12.23386 -12.13319 -11.94049 -11.75815 -11.46386 -11.33426 -11.24023 -11.12946 -10.83034 -10.75136 -10.69532 -10.50925 -10.39113 -10.21335 -10.12879 -9.54816 -9.06550 -8.92115 -8.77641 -8.54079 -8.29265 -7.83090 -5.94402 -3.94908 1.48045 1.53355 3.35166 3.41368 3.44969 3.87095 4.21915 4.51512 4.74199 4.87455 4.96394 5.04053 5.06890 5.17557 5.31134 5.38282 5.41652 5.51665 5.57884 5.58338 5.63473 5.70576 5.75315 5.85022 5.85765 5.90346 5.96832 6.02080 6.11257 6.15682 6.17860 6.23799 6.31349 6.38687 6.45050 6.56310 6.60940 6.64326 6.77710 6.81276 7.08025 7.12411 7.23709 7.28993 7.42634 7.51538 7.74251 7.90706 8.06517 8.51420 9.11587 9.68337 11.17145 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.004295 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.173952 B = 6517.937830 C = 7067.817299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.156 4.156 4 C 0.122 3.878 5 H 0.093 0.907 6 C -0.053 4.053 7 C -0.108 4.108 8 C -0.126 4.126 9 C -0.131 4.131 10 C -0.124 4.124 11 C -0.115 4.115 12 N -0.526 5.526 13 C 0.009 3.991 14 C 0.047 3.953 15 C -0.076 4.076 16 H 0.052 0.948 17 C -0.121 4.121 18 C 0.028 3.972 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.898 5.898 23 Si 0.888 3.112 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.035 0.965 46 H 0.053 0.947 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 -11.696 -14.065 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.213 4.213 4 C 0.013 3.987 5 H 0.111 0.889 6 C -0.054 4.054 7 C -0.126 4.126 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.142 4.142 11 C -0.134 4.134 12 N -0.248 5.248 13 C -0.139 4.139 14 C -0.080 4.080 15 C -0.095 4.095 16 H 0.071 0.929 17 C -0.178 4.178 18 C -0.010 4.010 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.716 3.284 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.572 -11.933 -13.748 20.567 hybrid contribution -0.246 0.764 0.676 1.049 sum -9.819 -11.169 -13.072 19.799 Atomic orbital electron populations 1.21903 0.95043 1.01993 1.01527 1.21773 0.96474 0.96571 0.98945 1.22152 1.01441 0.95591 1.02146 1.20750 0.87848 0.92107 0.98019 0.88922 1.19782 0.93964 0.95173 0.96464 1.21332 0.99921 0.91964 0.99381 1.21137 0.95988 0.97201 1.00071 1.21057 0.96065 0.98509 0.99283 1.21040 1.00015 0.92900 1.00220 1.21014 0.95691 0.97186 0.99464 1.62198 1.04334 1.41391 1.16922 1.22743 1.00945 1.00258 0.89974 1.22646 0.98188 0.90270 0.96904 1.21157 0.99370 0.97891 0.91112 0.92910 1.21561 0.98413 0.96982 1.00886 1.19116 0.95879 0.90931 0.95071 1.21240 1.37731 1.03830 0.91996 0.92629 1.25002 0.95512 0.95594 0.98379 1.69967 1.40401 1.08239 1.35166 0.86662 0.78490 0.77115 0.86155 1.20739 1.21351 1.19927 0.92588 0.93116 0.92141 0.90685 0.91776 0.92900 0.91928 0.84959 0.86661 0.86779 0.86545 0.86342 0.91736 0.91235 0.95045 0.93383 0.91637 0.94012 0.94558 0.92824 0.96724 0.97044 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.36 37.16 0.31 -1.24 16 2 C -0.12 -1.36 1.98 -90.62 -0.18 -1.54 16 3 C -0.16 -1.89 7.43 37.16 0.28 -1.62 16 4 C 0.12 1.64 1.67 -68.87 -0.11 1.52 16 5 H 0.09 1.44 6.50 -51.93 -0.34 1.10 16 6 C -0.05 -0.69 4.32 -104.63 -0.45 -1.14 16 7 C -0.11 -1.34 8.76 -39.58 -0.35 -1.69 16 8 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 9 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 10 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 11 C -0.12 -1.42 7.78 -39.58 -0.31 -1.73 16 12 N -0.53 -7.52 3.59 -236.27 -0.85 -8.36 16 13 C 0.01 0.10 7.14 60.07 0.43 0.53 16 14 C 0.05 0.79 3.75 -3.82 -0.01 0.78 16 15 C -0.08 -1.57 2.38 -90.63 -0.22 -1.79 16 16 H 0.05 1.13 6.87 -51.93 -0.36 0.77 16 17 C -0.12 -2.43 8.90 37.15 0.33 -2.10 16 18 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 19 C -0.51 -14.36 8.34 -34.44 -0.29 -14.65 16 20 H 0.06 1.54 7.08 -52.48 -0.37 1.17 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 23 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.64 6.10 -51.93 -0.32 0.33 16 30 H 0.07 0.84 5.95 -51.93 -0.31 0.53 16 31 H 0.06 0.82 4.58 -51.93 -0.24 0.58 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 34 H 0.13 1.57 4.72 -52.49 -0.25 1.32 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.11 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.37 7.99 -52.49 -0.42 0.95 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.73 4.76 -51.93 -0.25 0.49 16 41 H 0.03 0.36 5.45 -51.93 -0.28 0.07 16 42 H 0.05 0.81 4.58 -51.92 -0.24 0.57 16 43 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 44 H 0.04 0.77 7.87 -51.92 -0.41 0.37 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.05 1.16 6.82 -51.93 -0.35 0.81 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -29.79 363.10 -9.96 -39.75 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.31 Total: 0.64 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -1.99 Total: -28.02 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.11 Total: -34.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.79 -9.96 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308566239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.124 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds