Wall clock time and date at job start Tue Mar 31 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46995 * 2 1 4 4 C 1.53000 * 109.47172 * 120.00010 * 2 1 3 5 5 H 1.09005 * 109.46997 * 294.24550 * 4 2 1 6 6 C 1.50700 * 109.47468 * 54.24539 * 4 2 1 7 7 C 1.38234 * 119.99483 * 90.63113 * 6 4 2 8 8 C 1.38240 * 119.99410 * 179.78842 * 7 6 4 9 9 C 1.38235 * 119.99927 * 0.44686 * 8 7 6 10 10 C 1.38229 * 120.00304 * 359.81073 * 9 8 7 11 11 C 1.38230 * 119.99947 * 270.90997 * 6 4 2 12 12 N 1.46895 * 109.47398 * 174.24905 * 4 2 1 13 13 C 1.46907 * 110.99841 * 325.25058 * 12 4 2 14 14 C 1.46904 * 111.00342 * 89.19840 * 12 4 2 15 15 C 1.52999 * 109.47020 * 77.30946 * 14 12 4 16 16 H 1.09002 * 109.46677 * 304.17413 * 15 14 12 17 17 C 1.52990 * 109.47372 * 64.17318 * 15 14 12 18 18 C 1.52993 * 109.47029 * 184.17801 * 15 14 12 19 19 C 1.50703 * 109.47321 * 174.99772 * 18 15 14 20 20 H 1.08005 * 119.99792 * 0.02562 * 19 18 15 21 21 C 1.37868 * 120.00537 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00537 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47097 * 89.99971 * 23 21 19 25 25 H 1.48499 * 109.47304 * 210.00550 * 23 21 19 26 26 H 1.48508 * 109.46692 * 330.00049 * 23 21 19 27 27 H 1.09000 * 109.47104 * 299.99914 * 1 2 3 28 28 H 1.08994 * 109.47101 * 60.00083 * 1 2 3 29 29 H 1.09001 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47104 * 240.00086 * 2 1 3 31 31 H 1.09004 * 109.47286 * 186.40712 * 3 2 1 32 32 H 1.09002 * 109.47390 * 306.40585 * 3 2 1 33 33 H 1.09000 * 109.47481 * 66.41273 * 3 2 1 34 34 H 1.07995 * 120.00687 * 0.02562 * 7 6 4 35 35 H 1.07998 * 119.99785 * 180.27410 * 8 7 6 36 36 H 1.08003 * 119.99639 * 179.82984 * 9 8 7 37 37 H 1.07998 * 120.00104 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.00562 * 359.97438 * 11 6 4 39 39 H 1.09003 * 109.46920 * 193.10149 * 13 12 4 40 40 H 1.09000 * 109.46363 * 313.09702 * 13 12 4 41 41 H 1.08996 * 109.47251 * 73.09827 * 13 12 4 42 42 H 1.09007 * 109.47095 * 317.30950 * 14 12 4 43 43 H 1.09002 * 109.47180 * 197.30875 * 14 12 4 44 44 H 1.09007 * 109.47481 * 295.13617 * 17 15 14 45 45 H 1.08997 * 109.47150 * 55.13460 * 17 15 14 46 46 H 1.08996 * 109.47660 * 175.13725 * 17 15 14 47 47 H 1.09000 * 109.47277 * 294.99165 * 18 15 14 48 48 H 1.09003 * 109.47481 * 54.99705 * 18 15 14 49 49 H 0.97006 * 120.00263 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7633 -0.1513 2.1363 6 6 1.4248 -2.0950 1.3226 7 6 2.0652 -3.1711 0.7372 8 6 1.5030 -4.4321 0.8083 9 6 0.2960 -4.6151 1.4568 10 6 -0.3469 -3.5380 2.0375 11 6 0.2174 -2.2778 1.9702 12 7 3.5024 -0.8426 1.1819 13 6 3.9509 -1.0422 -0.2027 14 6 4.1562 0.3274 1.7834 15 6 4.1033 0.2134 3.3082 16 1 3.0679 0.0961 3.6281 17 6 4.9166 -1.0022 3.7572 18 6 4.6904 1.4796 3.9349 19 6 4.5269 1.4214 5.4319 20 1 4.0522 0.5665 5.8905 21 6 4.9843 2.4589 6.2163 22 7 5.5629 3.4997 5.6580 23 14 4.7823 2.3865 8.0719 24 1 5.9730 1.7351 8.6744 25 1 4.6468 3.7642 8.6092 26 1 3.5664 1.6026 8.4072 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1240 1.4447 -0.1147 32 1 1.5861 1.9884 -0.8271 33 1 1.7735 1.9222 0.9418 34 1 3.0066 -3.0276 0.2277 35 1 2.0055 -5.2736 0.3549 36 1 -0.1445 -5.5997 1.5099 37 1 -1.2902 -3.6809 2.5437 38 1 -0.2849 -1.4363 2.4240 39 1 4.9940 -1.3586 -0.2047 40 1 3.3377 -1.8090 -0.6761 41 1 3.8537 -0.1073 -0.7545 42 1 3.6394 1.2341 1.4687 43 1 5.1956 0.3701 1.4580 44 1 4.4479 -1.9119 3.3816 45 1 5.9302 -0.9267 3.3638 46 1 4.9509 -1.0344 4.8462 47 1 5.7497 1.5499 3.6877 48 1 4.1677 2.3535 3.5461 49 1 5.8844 4.2299 6.2097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308566239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:51 Heat of formation + Delta-G solvation = 5.194368 kcal Electronic energy + Delta-G solvation = -24262.059639 eV Core-core repulsion = 21188.106591 eV Total energy + Delta-G solvation = -3073.953048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26355 -39.01897 -36.86111 -34.84828 -33.71951 -32.19345 -31.60734 -29.10226 -28.15212 -27.96368 -27.35675 -25.39123 -23.36975 -23.08594 -22.41250 -20.93961 -20.04710 -18.50414 -17.70984 -17.01601 -16.65101 -16.36708 -16.01299 -15.90434 -15.33319 -14.98847 -14.82788 -14.52628 -14.32501 -14.08015 -13.77658 -13.39826 -13.33556 -13.22116 -13.17144 -12.95477 -12.88992 -12.73381 -12.72666 -12.50823 -12.24989 -12.19097 -12.08672 -11.96146 -11.70789 -11.56397 -11.33230 -11.22932 -11.03965 -10.84297 -10.52187 -9.66151 -9.45884 -8.97793 -8.16760 -6.25246 0.58741 0.64720 1.39214 1.40011 1.50929 2.41965 2.93512 3.12276 3.16591 3.75810 3.90272 4.00026 4.12932 4.17856 4.27509 4.32650 4.36530 4.39410 4.49304 4.57747 4.60418 4.69115 4.70641 4.74085 4.85114 4.86668 4.90165 4.93086 4.95315 5.00949 5.07016 5.10663 5.22379 5.23991 5.29243 5.30612 5.38178 5.40363 5.48839 5.52125 5.58782 5.70383 5.75135 5.82192 5.85587 5.91106 6.21051 6.25311 6.30843 6.36045 6.90230 7.42677 8.95158 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.004295 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.173952 B = 6517.937830 C = 7067.817299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.154 4.154 4 C 0.125 3.875 5 H 0.064 0.936 6 C -0.067 4.067 7 C -0.120 4.120 8 C -0.130 4.130 9 C -0.133 4.133 10 C -0.129 4.129 11 C -0.129 4.129 12 N -0.530 5.530 13 C 0.009 3.991 14 C 0.060 3.940 15 C -0.066 4.066 16 H 0.043 0.957 17 C -0.109 4.109 18 C 0.035 3.965 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.001 3.999 22 N -0.934 5.934 23 Si 0.957 3.043 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.266 1.266 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.032 0.968 47 H -0.010 1.010 48 H -0.014 1.014 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -13.624 -14.627 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.211 4.211 4 C 0.017 3.983 5 H 0.082 0.918 6 C -0.067 4.067 7 C -0.138 4.138 8 C -0.148 4.148 9 C -0.151 4.151 10 C -0.147 4.147 11 C -0.148 4.148 12 N -0.252 5.252 13 C -0.138 4.138 14 C -0.068 4.068 15 C -0.085 4.085 16 H 0.061 0.939 17 C -0.167 4.167 18 C -0.002 4.002 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.782 3.218 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.190 1.190 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.008 0.992 48 H 0.004 0.996 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.487 -13.876 -14.320 22.530 hybrid contribution 0.011 1.340 0.826 1.574 sum -10.476 -12.536 -13.494 21.190 Atomic orbital electron populations 1.21850 0.94154 1.02135 1.01807 1.21712 0.97167 0.95816 0.98350 1.22112 1.01076 0.96205 1.01678 1.20659 0.87300 0.92679 0.97703 0.91783 1.19758 0.94506 0.94883 0.97573 1.21448 1.00202 0.92339 0.99776 1.21435 0.96182 0.97376 0.99775 1.21397 0.95861 0.99478 0.98389 1.21318 1.00745 0.92527 1.00081 1.21130 0.95864 0.97921 0.99873 1.62108 1.04862 1.39562 1.18679 1.22805 1.01528 1.01088 0.88407 1.22342 0.98499 0.91567 0.94386 1.20943 0.98280 0.95650 0.93636 0.93897 1.21431 0.98529 0.97248 0.99451 1.18982 0.94209 0.92492 0.94526 1.21606 1.37588 1.03895 0.93397 0.92605 1.25887 0.95095 0.95159 1.03512 1.70094 1.41307 1.08993 1.37095 0.85571 0.78859 0.77398 0.79998 1.19881 1.20761 1.19011 0.93296 0.91825 0.92040 0.89580 0.92513 0.91273 0.93963 0.84615 0.84547 0.84379 0.84726 0.86501 0.91254 0.89513 0.94490 0.93657 0.91762 0.92277 0.94364 0.94858 0.99181 0.99583 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.36 71.98 0.60 -2.25 16 2 C -0.11 -2.47 1.98 -10.79 -0.02 -2.49 16 3 C -0.15 -3.70 7.43 71.98 0.53 -3.16 16 4 C 0.13 3.35 1.67 44.17 0.07 3.42 16 5 H 0.06 2.07 6.50 -2.38 -0.02 2.06 16 6 C -0.07 -1.67 4.32 -19.87 -0.09 -1.75 16 7 C -0.12 -2.75 8.76 22.27 0.20 -2.56 16 8 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 9 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 10 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 11 C -0.13 -3.09 7.78 22.27 0.17 -2.92 16 12 N -0.53 -14.84 3.59 -901.43 -3.24 -18.08 16 13 C 0.01 0.19 7.14 127.69 0.91 1.11 16 14 C 0.06 2.05 3.75 86.30 0.32 2.37 16 15 C -0.07 -2.80 2.38 -10.80 -0.03 -2.83 16 16 H 0.04 1.90 6.87 -2.39 -0.02 1.88 16 17 C -0.11 -4.40 8.90 71.98 0.64 -3.76 16 18 C 0.04 1.90 4.45 29.85 0.13 2.03 16 19 C -0.53 -30.43 8.34 25.60 0.21 -30.22 16 20 H 0.06 3.15 7.08 -2.91 -0.02 3.13 16 21 C 0.00 0.04 5.46 84.65 0.46 0.50 16 22 N -0.93 -57.59 13.29 21.44 0.28 -57.31 16 23 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.23 6.10 -2.39 -0.01 1.22 16 30 H 0.09 1.75 5.95 -2.39 -0.01 1.74 16 31 H 0.06 1.43 4.58 -2.39 -0.01 1.42 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.17 7.86 -2.39 -0.02 1.15 16 34 H 0.14 2.93 4.72 -2.91 -0.01 2.91 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.12 2.72 7.99 -2.91 -0.02 2.69 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.63 4.76 -2.39 -0.01 1.62 16 41 H 0.04 0.78 5.45 -2.39 -0.01 0.77 16 42 H 0.05 1.58 4.58 -2.38 -0.01 1.57 16 43 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 44 H 0.06 2.16 7.87 -2.38 -0.02 2.14 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.03 1.44 6.82 -2.39 -0.02 1.43 16 47 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 49 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -64.57 363.10 4.78 -59.79 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.91 Total: 17.92 kcal Atomic # 6 Polarization: -54.41 SS G_CDS: 4.80 Total: -49.61 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -2.95 Total: -75.38 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.57 4.78 -59.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308566239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.984 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds