Wall clock time and date at job start Tue Mar 31 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 C 1.53001 * 109.46864 * 119.99391 * 2 1 3 5 5 H 1.09001 * 109.47488 * 294.49113 * 4 2 1 6 6 C 1.50700 * 109.46932 * 54.49789 * 4 2 1 7 7 C 1.38230 * 120.00528 * 90.76924 * 6 4 2 8 8 C 1.38233 * 120.00357 * 179.78306 * 7 6 4 9 9 C 1.38241 * 119.99681 * 0.44494 * 8 7 6 10 10 C 1.38230 * 119.99888 * 359.81327 * 9 8 7 11 11 C 1.38232 * 120.00527 * 359.97078 * 10 9 8 12 12 N 1.46902 * 109.47091 * 174.49187 * 4 2 1 13 13 C 1.46904 * 110.99825 * 325.90606 * 12 4 2 14 14 C 1.46897 * 110.99826 * 89.85191 * 12 4 2 15 15 C 1.53005 * 109.46942 * 163.73060 * 14 12 4 16 16 H 1.09000 * 109.47195 * 55.00163 * 15 14 12 17 17 C 1.53004 * 109.47188 * 295.00289 * 15 14 12 18 18 C 1.52993 * 109.47319 * 175.00478 * 15 14 12 19 19 C 1.50702 * 109.47690 * 185.00023 * 18 15 14 20 20 H 1.08002 * 119.99338 * 359.97438 * 19 18 15 21 21 C 1.37873 * 120.00515 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99939 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00063 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47719 * 89.99608 * 23 21 19 25 25 H 1.48501 * 109.46926 * 209.99971 * 23 21 19 26 26 H 1.48509 * 109.46913 * 329.99272 * 23 21 19 27 27 H 1.08998 * 109.47447 * 299.99875 * 1 2 3 28 28 H 1.08997 * 109.47526 * 60.00346 * 1 2 3 29 29 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47428 * 239.99568 * 2 1 3 31 31 H 1.08999 * 109.47192 * 188.86263 * 3 2 1 32 32 H 1.09002 * 109.46723 * 308.86207 * 3 2 1 33 33 H 1.09007 * 109.47560 * 68.85992 * 3 2 1 34 34 H 1.08004 * 119.99557 * 359.97438 * 7 6 4 35 35 H 1.07995 * 120.00402 * 180.27154 * 8 7 6 36 36 H 1.08002 * 119.99820 * 179.82630 * 9 8 7 37 37 H 1.08002 * 120.00024 * 180.02562 * 10 9 8 38 38 H 1.08000 * 120.00540 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.47029 * 195.46913 * 13 12 4 40 40 H 1.09000 * 109.47142 * 315.46368 * 13 12 4 41 41 H 1.08996 * 109.47444 * 75.46427 * 13 12 4 42 42 H 1.09002 * 109.47010 * 43.73415 * 14 12 4 43 43 H 1.08997 * 109.47877 * 283.73079 * 14 12 4 44 44 H 1.08999 * 109.46975 * 60.00001 * 17 15 14 45 45 H 1.08999 * 109.47339 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.46949 * 300.00025 * 17 15 14 47 47 H 1.09004 * 109.47038 * 304.99839 * 18 15 14 48 48 H 1.09000 * 109.47797 * 64.99755 * 18 15 14 49 49 H 0.96995 * 120.00325 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.7594 -0.1535 2.1366 6 6 1.4294 -2.0971 1.3194 7 6 2.0760 -3.1708 0.7365 8 6 1.5182 -4.4337 0.8047 9 6 0.3090 -4.6214 1.4479 10 6 -0.3402 -3.5468 2.0263 11 6 0.2198 -2.2846 1.9620 12 7 3.5029 -0.8374 1.1848 13 6 3.9560 -1.0181 -0.2009 14 6 4.1512 0.3269 1.8029 15 6 5.6196 0.0026 2.0855 16 1 6.1026 -0.3262 1.1653 17 6 5.7039 -1.1107 3.1317 18 6 6.3256 1.2530 2.6134 19 6 7.7967 0.9688 2.7755 20 1 8.1887 -0.0064 2.5271 21 6 8.6418 1.9533 3.2417 22 7 8.1643 3.1407 3.5446 23 14 10.4653 1.6011 3.4418 24 1 11.1754 1.9352 2.1812 25 1 11.0100 2.4258 4.5502 26 1 10.6603 0.1622 3.7535 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1184 1.4466 -0.1583 32 1 1.5531 1.9999 -0.8002 33 1 1.8116 1.9087 0.9585 34 1 3.0187 -3.0234 0.2304 35 1 2.0255 -5.2733 0.3530 36 1 -0.1282 -5.6076 1.4988 37 1 -1.2847 -3.6934 2.5292 38 1 -0.2877 -1.4450 2.4135 39 1 4.9870 -1.3718 -0.2028 40 1 3.3199 -1.7500 -0.6986 41 1 3.8972 -0.0666 -0.7294 42 1 3.6464 0.5699 2.7379 43 1 4.0911 1.1786 1.1255 44 1 5.2010 -2.0015 2.7556 45 1 6.7499 -1.3420 3.3326 46 1 5.2209 -0.7819 4.0518 47 1 6.1895 2.0724 1.9076 48 1 5.9008 1.5302 3.5782 49 1 8.7589 3.8334 3.8723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308566240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:55 Heat of formation + Delta-G solvation = 17.555568 kcal Electronic energy + Delta-G solvation = -23976.994186 eV Core-core repulsion = 20903.577159 eV Total energy + Delta-G solvation = -3073.417026 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25497 -38.03245 -35.44158 -33.30717 -31.92523 -31.22375 -30.71683 -27.35571 -27.08761 -26.88359 -26.07418 -23.68524 -22.49086 -21.82668 -21.44332 -19.44172 -18.81189 -16.85259 -16.32962 -15.92723 -15.46339 -15.32557 -14.71704 -14.47543 -14.32026 -13.81519 -13.63488 -13.41444 -12.85208 -12.65362 -12.49074 -12.43110 -12.23325 -12.14971 -11.98092 -11.74719 -11.43914 -11.32335 -11.25973 -11.12390 -10.85926 -10.79856 -10.75549 -10.57936 -10.46913 -10.24360 -10.11089 -9.56358 -9.08646 -8.93184 -8.84543 -8.59530 -8.29891 -7.86463 -5.94965 -3.95659 1.40545 1.46744 3.34553 3.40919 3.44518 3.80545 4.18866 4.51070 4.68312 4.81648 4.89642 4.97573 5.01196 5.12645 5.27144 5.39304 5.40932 5.42700 5.51644 5.59704 5.60717 5.67555 5.71111 5.77670 5.79658 5.88963 5.96044 6.04926 6.06974 6.12573 6.14606 6.19830 6.25478 6.37813 6.47022 6.50171 6.56865 6.62084 6.70893 6.78263 7.05392 7.08945 7.19712 7.26616 7.42521 7.49878 7.73109 7.89986 8.05837 8.50501 9.10846 9.67589 11.16616 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022515 B = 0.003629 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.292785 B = 7714.386204 C = 8398.782187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.158 4.158 4 C 0.123 3.877 5 H 0.084 0.916 6 C -0.056 4.056 7 C -0.105 4.105 8 C -0.125 4.125 9 C -0.130 4.130 10 C -0.125 4.125 11 C -0.117 4.117 12 N -0.526 5.526 13 C 0.011 3.989 14 C 0.054 3.946 15 C -0.078 4.078 16 H 0.054 0.946 17 C -0.122 4.122 18 C 0.027 3.973 19 C -0.510 4.510 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.037 0.963 47 H 0.011 0.989 48 H 0.015 0.985 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.950 -10.690 -7.411 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.215 4.215 4 C 0.014 3.986 5 H 0.102 0.898 6 C -0.057 4.057 7 C -0.123 4.123 8 C -0.143 4.143 9 C -0.148 4.148 10 C -0.143 4.143 11 C -0.136 4.136 12 N -0.248 5.248 13 C -0.137 4.137 14 C -0.072 4.072 15 C -0.097 4.097 16 H 0.073 0.927 17 C -0.179 4.179 18 C -0.010 4.010 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.738 -10.929 -7.062 21.999 hybrid contribution 0.797 0.654 -0.209 1.052 sum -16.942 -10.274 -7.271 21.106 Atomic orbital electron populations 1.21905 0.95134 1.01970 1.01400 1.21791 0.96312 0.96644 0.99105 1.22170 1.01934 0.95426 1.01930 1.20764 0.88279 0.91925 0.97675 0.89754 1.19803 0.93998 0.95206 0.96684 1.21343 0.99946 0.91909 0.99053 1.21169 0.95927 0.97267 0.99902 1.21073 0.95993 0.98561 0.99221 1.21026 0.99975 0.92920 1.00384 1.20975 0.95692 0.97063 0.99842 1.62180 1.03625 1.41756 1.17253 1.22725 1.01371 1.00334 0.89260 1.22613 0.96679 0.89900 0.98039 1.21176 0.91808 0.98312 0.98429 0.92728 1.21570 1.00846 0.97577 0.97907 1.19120 0.94665 0.91265 0.95958 1.21240 0.92987 0.97796 1.42840 0.92621 1.25012 0.98554 0.95204 0.95774 1.69964 1.35068 1.03298 1.45428 0.86648 0.85795 0.78244 0.77643 1.20798 1.21337 1.19889 0.92823 0.93071 0.92135 0.90446 0.91368 0.92808 0.92444 0.84841 0.86534 0.86727 0.86581 0.86497 0.91100 0.91556 0.94793 0.91700 0.94077 0.93901 0.92971 0.94424 0.97056 0.96706 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.35 37.16 0.31 -1.10 16 2 C -0.12 -1.30 1.98 -90.62 -0.18 -1.48 16 3 C -0.16 -1.82 7.79 37.16 0.29 -1.53 16 4 C 0.12 1.52 1.81 -68.86 -0.12 1.39 16 5 H 0.08 1.10 7.39 -51.93 -0.38 0.72 16 6 C -0.06 -0.68 4.33 -104.62 -0.45 -1.13 16 7 C -0.10 -1.26 8.76 -39.59 -0.35 -1.61 16 8 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 9 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 10 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 11 C -0.12 -1.29 7.78 -39.58 -0.31 -1.60 16 12 N -0.53 -7.47 3.55 -236.28 -0.84 -8.31 16 13 C 0.01 0.14 6.82 60.07 0.41 0.55 16 14 C 0.05 0.92 3.73 -3.82 -0.01 0.91 16 15 C -0.08 -1.60 2.35 -90.62 -0.21 -1.81 16 16 H 0.05 1.13 6.85 -51.93 -0.36 0.78 16 17 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 18 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 19 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 20 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 23 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.59 6.09 -51.93 -0.32 0.28 16 30 H 0.08 0.86 5.92 -51.93 -0.31 0.55 16 31 H 0.07 0.89 4.09 -51.93 -0.21 0.68 16 32 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 34 H 0.13 1.61 4.83 -52.48 -0.25 1.36 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.13 7.98 -52.49 -0.42 0.71 16 39 H 0.07 0.98 7.11 -51.93 -0.37 0.61 16 40 H 0.07 0.75 4.76 -51.93 -0.25 0.50 16 41 H 0.03 0.44 5.42 -51.93 -0.28 0.15 16 42 H 0.06 1.13 7.61 -51.93 -0.40 0.73 16 43 H 0.04 0.70 5.12 -51.93 -0.27 0.43 16 44 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 45 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -29.72 363.09 -9.96 -39.67 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.30 Total: -0.07 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.00 Total: -27.21 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.10 Total: -34.68 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.72 -9.96 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308566240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.229 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds