Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 C 1.53001 * 109.46864 * 119.99391 * 2 1 3 5 5 H 1.09001 * 109.47488 * 294.49113 * 4 2 1 6 6 C 1.50700 * 109.46932 * 54.49789 * 4 2 1 7 7 C 1.38230 * 120.00528 * 90.76924 * 6 4 2 8 8 C 1.38233 * 120.00357 * 179.78306 * 7 6 4 9 9 C 1.38241 * 119.99681 * 0.44494 * 8 7 6 10 10 C 1.38230 * 119.99888 * 359.81327 * 9 8 7 11 11 C 1.38232 * 120.00527 * 359.97078 * 10 9 8 12 12 N 1.46902 * 109.47091 * 174.49187 * 4 2 1 13 13 C 1.46904 * 110.99825 * 325.90606 * 12 4 2 14 14 C 1.46897 * 110.99826 * 89.85191 * 12 4 2 15 15 C 1.53005 * 109.46942 * 163.73060 * 14 12 4 16 16 H 1.09000 * 109.47195 * 55.00163 * 15 14 12 17 17 C 1.53004 * 109.47188 * 295.00289 * 15 14 12 18 18 C 1.52993 * 109.47319 * 175.00478 * 15 14 12 19 19 C 1.50702 * 109.47690 * 185.00023 * 18 15 14 20 20 H 1.08002 * 119.99338 * 359.97438 * 19 18 15 21 21 C 1.37873 * 120.00515 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99939 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00063 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47719 * 89.99608 * 23 21 19 25 25 H 1.48501 * 109.46926 * 209.99971 * 23 21 19 26 26 H 1.48509 * 109.46913 * 329.99272 * 23 21 19 27 27 H 1.08998 * 109.47447 * 299.99875 * 1 2 3 28 28 H 1.08997 * 109.47526 * 60.00346 * 1 2 3 29 29 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47428 * 239.99568 * 2 1 3 31 31 H 1.08999 * 109.47192 * 188.86263 * 3 2 1 32 32 H 1.09002 * 109.46723 * 308.86207 * 3 2 1 33 33 H 1.09007 * 109.47560 * 68.85992 * 3 2 1 34 34 H 1.08004 * 119.99557 * 359.97438 * 7 6 4 35 35 H 1.07995 * 120.00402 * 180.27154 * 8 7 6 36 36 H 1.08002 * 119.99820 * 179.82630 * 9 8 7 37 37 H 1.08002 * 120.00024 * 180.02562 * 10 9 8 38 38 H 1.08000 * 120.00540 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.47029 * 195.46913 * 13 12 4 40 40 H 1.09000 * 109.47142 * 315.46368 * 13 12 4 41 41 H 1.08996 * 109.47444 * 75.46427 * 13 12 4 42 42 H 1.09002 * 109.47010 * 43.73415 * 14 12 4 43 43 H 1.08997 * 109.47877 * 283.73079 * 14 12 4 44 44 H 1.08999 * 109.46975 * 60.00001 * 17 15 14 45 45 H 1.08999 * 109.47339 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.46949 * 300.00025 * 17 15 14 47 47 H 1.09004 * 109.47038 * 304.99839 * 18 15 14 48 48 H 1.09000 * 109.47797 * 64.99755 * 18 15 14 49 49 H 0.96995 * 120.00325 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.7594 -0.1535 2.1366 6 6 1.4294 -2.0971 1.3194 7 6 2.0760 -3.1708 0.7365 8 6 1.5182 -4.4337 0.8047 9 6 0.3090 -4.6214 1.4479 10 6 -0.3402 -3.5468 2.0263 11 6 0.2198 -2.2846 1.9620 12 7 3.5029 -0.8374 1.1848 13 6 3.9560 -1.0181 -0.2009 14 6 4.1512 0.3269 1.8029 15 6 5.6196 0.0026 2.0855 16 1 6.1026 -0.3262 1.1653 17 6 5.7039 -1.1107 3.1317 18 6 6.3256 1.2530 2.6134 19 6 7.7967 0.9688 2.7755 20 1 8.1887 -0.0064 2.5271 21 6 8.6418 1.9533 3.2417 22 7 8.1643 3.1407 3.5446 23 14 10.4653 1.6011 3.4418 24 1 11.1754 1.9352 2.1812 25 1 11.0100 2.4258 4.5502 26 1 10.6603 0.1622 3.7535 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1184 1.4466 -0.1583 32 1 1.5531 1.9999 -0.8002 33 1 1.8116 1.9087 0.9585 34 1 3.0187 -3.0234 0.2304 35 1 2.0255 -5.2733 0.3530 36 1 -0.1282 -5.6076 1.4988 37 1 -1.2847 -3.6934 2.5292 38 1 -0.2877 -1.4450 2.4135 39 1 4.9870 -1.3718 -0.2028 40 1 3.3199 -1.7500 -0.6986 41 1 3.8972 -0.0666 -0.7294 42 1 3.6464 0.5699 2.7379 43 1 4.0911 1.1786 1.1255 44 1 5.2010 -2.0015 2.7556 45 1 6.7499 -1.3420 3.3326 46 1 5.2209 -0.7819 4.0518 47 1 6.1895 2.0724 1.9076 48 1 5.9008 1.5302 3.5782 49 1 8.7589 3.8334 3.8723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308566240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = 3.524176 kcal Electronic energy + Delta-G solvation = -23977.602633 eV Core-core repulsion = 20903.577159 eV Total energy + Delta-G solvation = -3074.025473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22436 -39.03511 -36.96345 -34.86778 -33.59413 -32.14552 -31.60181 -29.02553 -28.27898 -27.97028 -27.36317 -25.42232 -23.41930 -23.11530 -22.38994 -20.50697 -20.34728 -18.50145 -17.63843 -17.10931 -16.58383 -16.45434 -16.18073 -15.77079 -15.37202 -14.99615 -14.83520 -14.48345 -14.24376 -14.10221 -13.87732 -13.36634 -13.30777 -13.23309 -13.17469 -12.90750 -12.82301 -12.77868 -12.68503 -12.39452 -12.33548 -12.21182 -12.11797 -12.02378 -11.61812 -11.57055 -11.37423 -11.28170 -11.04851 -10.81093 -10.51899 -9.66069 -9.45856 -9.02098 -8.16433 -6.25193 0.58273 0.64859 1.40025 1.40963 1.52035 2.42461 2.92312 3.10946 3.16954 3.75763 3.89730 3.98404 4.15545 4.17677 4.27689 4.31139 4.33925 4.40424 4.51207 4.54566 4.59914 4.65531 4.70474 4.74902 4.83753 4.86243 4.89848 4.94919 4.96691 5.02071 5.05005 5.13535 5.23146 5.24746 5.29377 5.30744 5.40834 5.41801 5.49591 5.51437 5.58243 5.70036 5.75843 5.81313 5.84883 5.91340 6.18961 6.24664 6.29028 6.36406 6.90740 7.42909 8.95585 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022515 B = 0.003629 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.292785 B = 7714.386204 C = 8398.782187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.156 4.156 4 C 0.126 3.874 5 H 0.075 0.925 6 C -0.069 4.069 7 C -0.121 4.121 8 C -0.132 4.132 9 C -0.133 4.133 10 C -0.128 4.128 11 C -0.125 4.125 12 N -0.528 5.528 13 C 0.013 3.987 14 C 0.069 3.931 15 C -0.069 4.069 16 H 0.052 0.948 17 C -0.110 4.110 18 C 0.035 3.965 19 C -0.527 4.527 20 H 0.059 0.941 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.959 3.041 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.031 0.969 47 H -0.014 1.014 48 H -0.012 1.012 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -12.449 -7.950 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.212 4.212 4 C 0.017 3.983 5 H 0.093 0.907 6 C -0.069 4.069 7 C -0.139 4.139 8 C -0.150 4.150 9 C -0.151 4.151 10 C -0.146 4.146 11 C -0.143 4.143 12 N -0.250 5.250 13 C -0.135 4.135 14 C -0.059 4.059 15 C -0.087 4.087 16 H 0.071 0.929 17 C -0.168 4.168 18 C -0.003 4.003 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.576 5.576 23 Si 0.784 3.216 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.004 0.996 48 H 0.006 0.994 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.639 -12.704 -7.611 23.806 hybrid contribution 1.009 1.182 -0.042 1.554 sum -17.630 -11.522 -7.653 22.409 Atomic orbital electron populations 1.21843 0.93755 1.02173 1.02014 1.21716 0.97378 0.95781 0.98304 1.22134 1.00868 0.96197 1.02047 1.20742 0.86806 0.92723 0.98010 0.90655 1.19777 0.94718 0.94694 0.97739 1.21402 1.00099 0.92605 0.99788 1.21410 0.96384 0.97271 0.99960 1.21401 0.95648 0.99695 0.98394 1.21341 1.00737 0.92499 0.99992 1.21146 0.95453 0.97981 0.99711 1.62083 1.04960 1.39973 1.18014 1.22735 1.01199 1.00858 0.88660 1.22299 0.94554 0.90966 0.98084 1.20973 0.93656 0.95983 0.98137 0.92934 1.21446 0.99854 0.97977 0.97473 1.18995 0.94427 0.92843 0.94038 1.21630 0.94302 0.97963 1.42619 0.92306 1.25923 1.03603 0.94942 0.95389 1.70097 1.36895 1.04323 1.46300 0.85537 0.79740 0.78482 0.77852 1.19868 1.20925 1.18853 0.92516 0.92163 0.92085 0.90362 0.93133 0.91520 0.93091 0.85336 0.85034 0.84496 0.84397 0.85570 0.92112 0.89576 0.94792 0.92361 0.94350 0.91863 0.94657 0.94949 0.99593 0.99405 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.35 71.98 0.60 -1.84 16 2 C -0.11 -2.33 1.98 -10.79 -0.02 -2.35 16 3 C -0.16 -3.53 7.79 71.98 0.56 -2.97 16 4 C 0.13 3.03 1.81 44.17 0.08 3.11 16 5 H 0.08 1.95 7.39 -2.39 -0.02 1.93 16 6 C -0.07 -1.56 4.33 -19.86 -0.09 -1.65 16 7 C -0.12 -2.74 8.76 22.27 0.19 -2.55 16 8 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 9 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 10 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 11 C -0.12 -2.50 7.78 22.27 0.17 -2.33 16 12 N -0.53 -14.84 3.55 -901.45 -3.20 -18.05 16 13 C 0.01 0.33 6.82 127.69 0.87 1.20 16 14 C 0.07 2.36 3.73 86.31 0.32 2.69 16 15 C -0.07 -2.86 2.35 -10.79 -0.03 -2.88 16 16 H 0.05 2.21 6.85 -2.39 -0.02 2.19 16 17 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 18 C 0.03 1.84 4.45 29.85 0.13 1.97 16 19 C -0.53 -30.21 8.41 25.60 0.22 -30.00 16 20 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 21 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 22 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 23 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.08 6.09 -2.38 -0.01 1.06 16 30 H 0.08 1.63 5.92 -2.39 -0.01 1.62 16 31 H 0.05 1.33 4.09 -2.39 -0.01 1.32 16 32 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 33 H 0.05 1.21 8.11 -2.38 -0.02 1.19 16 34 H 0.13 2.95 4.83 -2.91 -0.01 2.93 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.13 2.22 7.98 -2.91 -0.02 2.20 16 39 H 0.06 1.66 7.11 -2.39 -0.02 1.64 16 40 H 0.09 1.84 4.76 -2.39 -0.01 1.83 16 41 H 0.03 0.86 5.42 -2.39 -0.01 0.85 16 42 H 0.06 2.07 7.61 -2.39 -0.02 2.06 16 43 H 0.04 1.35 5.12 -2.39 -0.01 1.34 16 44 H 0.06 2.24 7.75 -2.39 -0.02 2.23 16 45 H 0.03 1.49 6.95 -2.39 -0.02 1.48 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 47 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -64.06 363.09 4.80 -59.25 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.91 Total: 16.69 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 4.79 Total: -47.53 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.92 Total: -75.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.06 4.80 -59.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308566240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.777 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds