Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.36940 * 119.99488 * 84.25751 * 3 2 1 5 5 H 1.07999 * 120.00103 * 326.72269 * 4 3 2 6 6 C 1.38817 * 119.99643 * 146.72476 * 4 3 2 7 7 N 1.31614 * 120.00275 * 336.47830 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 156.48180 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46497 * 120.00235 * 264.25574 * 3 2 1 13 13 C 1.50699 * 109.46861 * 89.99913 * 12 3 2 14 14 N 1.29051 * 124.90845 * 90.00193 * 13 12 3 15 15 C 1.31809 * 117.12098 * 179.97438 * 14 13 12 16 16 Br 1.89098 * 122.75916 * 179.97438 * 15 14 13 17 17 C 1.33706 * 114.48145 * 359.97438 * 15 14 13 18 18 S 1.70972 * 124.91360 * 269.69568 * 13 12 3 19 19 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 20 20 H 1.08990 * 109.47311 * 299.99452 * 1 2 3 21 21 H 1.09006 * 109.46941 * 60.00111 * 1 2 3 22 22 H 1.09002 * 109.47708 * 240.00550 * 2 1 3 23 23 H 1.09000 * 109.47115 * 120.00315 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.47209 * 210.00006 * 12 3 2 26 26 H 1.08994 * 109.47171 * 329.99971 * 12 3 2 27 27 H 1.07994 * 126.03605 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1346 2.0663 1.1800 5 1 1.4365 1.8811 1.9830 6 6 3.1499 2.9986 1.3441 7 7 4.2429 2.9165 0.6156 8 14 2.9647 4.3699 2.5991 9 1 1.6530 4.2410 3.2831 10 1 4.0571 4.2752 3.6005 11 1 3.0367 5.6838 1.9107 12 6 2.3822 2.0296 -1.2623 13 6 1.1741 2.7230 -1.8373 14 7 0.8376 3.9446 -1.5926 15 6 -0.2522 4.3969 -2.1801 16 35 -0.8910 6.1596 -1.9338 17 6 -0.8688 3.5069 -2.9646 18 16 0.0552 2.0075 -2.9140 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.9525 3.5678 0.7305 25 1 3.1694 2.7615 -1.0812 26 1 2.7395 1.2785 -1.9667 27 1 -1.7719 3.6779 -3.5315 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308609960.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = 66.680590 kcal Electronic energy + Delta-G solvation = -13868.885798 eV Core-core repulsion = 11414.733039 eV Total energy + Delta-G solvation = -2454.152759 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10964 -36.10841 -31.99590 -31.73720 -29.92535 -28.60742 -26.79667 -24.20097 -22.64465 -20.57589 -19.17101 -17.70661 -16.68488 -15.35976 -14.76168 -14.44342 -13.85105 -13.66974 -13.17113 -13.09047 -12.57374 -11.88660 -11.35342 -11.33023 -11.21220 -10.79478 -10.69551 -10.54953 -10.26928 -10.10841 -10.05440 -9.90682 -9.03182 -8.92473 -8.59598 -8.20828 -6.84506 -5.94063 -3.44054 1.10229 1.31848 2.00451 2.52268 3.18911 3.38721 3.48553 3.50473 4.44593 4.96420 5.27489 5.40212 5.50996 5.69253 5.91345 6.17891 6.24130 6.39060 6.49268 6.50972 6.77659 7.02668 7.37402 7.73306 8.21455 8.36697 8.99591 9.65193 10.15533 11.07731 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.008600 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.953816 B = 3254.959745 C = 4497.196405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.138 3.862 3 N -0.563 5.563 4 C -0.258 4.258 5 H 0.065 0.935 6 C 0.024 3.976 7 N -0.879 5.879 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.197 3.803 13 C 0.100 3.900 14 N -0.459 5.459 15 C 0.082 3.918 16 Br -0.007 7.007 17 C -0.260 4.260 18 S 0.091 5.909 19 H 0.041 0.959 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.259 0.741 25 H 0.136 0.864 26 H 0.055 0.945 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 0.915 -8.280 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.012 3.988 3 N -0.282 5.282 4 C -0.387 4.387 5 H 0.082 0.918 6 C -0.178 4.178 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.065 3.935 13 C -0.183 4.183 14 N -0.174 5.174 15 C -0.131 4.131 16 Br 0.075 6.925 17 C -0.403 4.403 18 S 0.345 5.655 19 H 0.060 0.940 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.152 0.848 26 H 0.073 0.927 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.968 0.940 -8.258 12.227 hybrid contribution -0.615 1.399 0.685 1.675 sum -9.583 2.339 -7.572 12.435 Atomic orbital electron populations 1.22432 0.99797 0.99551 1.01760 1.20978 0.91927 0.86316 0.99558 1.43849 1.74579 1.07964 1.01770 1.19027 1.08558 1.18914 0.92249 0.91767 1.25014 0.93855 1.00617 0.98285 1.69887 1.04746 1.35239 1.42141 0.86294 0.77648 0.82730 0.80507 1.20082 1.21674 1.20831 1.20116 0.90291 0.97010 0.86048 1.29815 1.02722 0.91244 0.94541 1.66110 1.14193 1.13625 1.23423 1.21632 0.96020 0.94514 1.00930 1.96638 1.85194 1.13399 1.97273 1.26594 1.07693 0.96257 1.09748 1.83883 1.21170 1.15749 1.44689 0.94017 0.93105 0.93258 0.94214 0.92837 0.93099 0.84770 0.92691 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 10.20 37.16 0.38 -2.75 15 2 C 0.14 2.73 6.44 -4.04 -0.03 2.71 15 3 N -0.56 -13.34 2.45 -174.61 -0.43 -13.77 15 4 C -0.26 -6.87 9.48 -15.06 -0.14 -7.01 15 5 H 0.06 1.74 7.93 -52.49 -0.42 1.32 15 6 C 0.02 0.64 4.94 -17.43 -0.09 0.56 15 7 N -0.88 -24.38 11.30 55.49 0.63 -23.75 15 8 Si 0.90 22.09 29.61 -169.99 -5.03 17.06 15 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 12 C 0.20 4.44 5.91 -5.20 -0.03 4.41 15 13 C 0.10 2.09 6.89 -13.45 -0.09 2.00 15 14 N -0.46 -10.27 10.55 -10.26 -0.11 -10.38 15 15 C 0.08 1.56 7.18 -19.15 -0.14 1.42 15 16 Br -0.01 -0.12 33.99 -68.01 -2.31 -2.43 15 17 C -0.26 -4.21 11.20 29.14 0.33 -3.89 15 18 S 0.09 1.50 21.25 -107.50 -2.28 -0.79 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.05 0.87 5.97 -51.93 -0.31 0.56 15 22 H 0.04 0.71 7.83 -51.93 -0.41 0.30 15 23 H 0.05 1.07 8.09 -51.93 -0.42 0.65 15 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 25 H 0.14 3.50 5.29 -51.93 -0.27 3.23 15 26 H 0.05 1.11 7.86 -51.93 -0.41 0.70 15 27 H 0.17 2.23 8.06 -52.49 -0.42 1.81 15 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -28.38 268.34 -7.94 -36.32 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -2.64 Total: -3.74 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 0.19 Total: -2.56 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.09 Total: -47.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.28 Total: -0.79 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -2.31 Total: -2.43 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.38 -7.94 -36.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308609960.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.000 kcal (2) G-P(sol) polarization free energy of solvation -28.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds