Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.36940 * 119.99488 * 84.25751 * 3 2 1 5 5 H 1.07999 * 120.00103 * 326.72269 * 4 3 2 6 6 C 1.38817 * 119.99643 * 146.72476 * 4 3 2 7 7 N 1.31614 * 120.00275 * 336.47830 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 156.48180 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46497 * 120.00235 * 264.25574 * 3 2 1 13 13 C 1.50699 * 109.46861 * 89.99913 * 12 3 2 14 14 N 1.29051 * 124.90845 * 90.00193 * 13 12 3 15 15 C 1.31809 * 117.12098 * 179.97438 * 14 13 12 16 16 Br 1.89098 * 122.75916 * 179.97438 * 15 14 13 17 17 C 1.33706 * 114.48145 * 359.97438 * 15 14 13 18 18 S 1.70972 * 124.91360 * 269.69568 * 13 12 3 19 19 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 20 20 H 1.08990 * 109.47311 * 299.99452 * 1 2 3 21 21 H 1.09006 * 109.46941 * 60.00111 * 1 2 3 22 22 H 1.09002 * 109.47708 * 240.00550 * 2 1 3 23 23 H 1.09000 * 109.47115 * 120.00315 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.47209 * 210.00006 * 12 3 2 26 26 H 1.08994 * 109.47171 * 329.99971 * 12 3 2 27 27 H 1.07994 * 126.03605 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1346 2.0663 1.1800 5 1 1.4365 1.8811 1.9830 6 6 3.1499 2.9986 1.3441 7 7 4.2429 2.9165 0.6156 8 14 2.9647 4.3699 2.5991 9 1 1.6530 4.2410 3.2831 10 1 4.0571 4.2752 3.6005 11 1 3.0367 5.6838 1.9107 12 6 2.3822 2.0296 -1.2623 13 6 1.1741 2.7230 -1.8373 14 7 0.8376 3.9446 -1.5926 15 6 -0.2522 4.3969 -2.1801 16 35 -0.8910 6.1596 -1.9338 17 6 -0.8688 3.5069 -2.9646 18 16 0.0552 2.0075 -2.9140 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.9525 3.5678 0.7305 25 1 3.1694 2.7615 -1.0812 26 1 2.7395 1.2785 -1.9667 27 1 -1.7719 3.6779 -3.5315 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308609960.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = 49.694566 kcal Electronic energy + Delta-G solvation = -13869.622367 eV Core-core repulsion = 11414.733039 eV Total energy + Delta-G solvation = -2454.889328 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.61101 -37.82869 -33.87380 -33.16287 -31.42341 -30.14798 -28.48742 -25.96618 -24.17455 -22.26273 -20.66000 -19.28600 -18.43838 -17.04868 -16.39420 -16.07035 -15.66459 -15.24842 -14.69817 -14.58002 -14.22613 -13.40469 -13.19072 -12.90921 -12.69892 -12.65862 -12.43194 -12.17264 -12.00931 -11.86767 -11.48539 -11.41781 -10.57955 -10.52018 -10.34378 -9.59467 -8.72726 -7.91584 -5.45626 -0.30423 -0.01735 0.54415 1.13392 1.39495 1.47510 1.52171 1.69495 2.47926 3.20677 3.55322 3.71206 4.21337 4.31305 4.41513 4.62835 4.76089 4.85544 4.94483 5.06994 5.26702 5.52622 5.56111 5.68149 6.38297 6.80439 7.07990 7.77511 8.24172 9.06259 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.008600 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.953816 B = 3254.959745 C = 4497.196405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 N -0.581 5.581 4 C -0.259 4.259 5 H 0.051 0.949 6 C -0.017 4.017 7 N -0.904 5.904 8 Si 0.940 3.060 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.295 1.295 12 C 0.201 3.799 13 C 0.060 3.940 14 N -0.498 5.498 15 C 0.044 3.956 16 Br 0.007 6.993 17 C -0.236 4.236 18 S 0.183 5.817 19 H 0.075 0.925 20 H 0.027 0.973 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.254 0.746 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.242 0.014 -9.891 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.301 5.301 4 C -0.389 4.389 5 H 0.069 0.931 6 C -0.215 4.215 7 N -0.548 5.548 8 Si 0.769 3.231 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.222 1.222 12 C 0.070 3.930 13 C -0.223 4.223 14 N -0.214 5.214 15 C -0.167 4.167 16 Br 0.089 6.911 17 C -0.379 4.379 18 S 0.437 5.563 19 H 0.093 0.907 20 H 0.046 0.954 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.057 0.023 -9.870 14.821 hybrid contribution -0.117 1.642 0.994 1.923 sum -11.174 1.664 -8.875 14.367 Atomic orbital electron populations 1.22298 0.97963 1.01363 1.00658 1.21126 0.93269 0.84603 1.00180 1.43954 1.75343 1.09479 1.01314 1.19045 1.07630 1.18983 0.93273 0.93082 1.25446 0.94065 1.02191 0.99807 1.69979 1.05251 1.35844 1.43696 0.85647 0.77541 0.80601 0.79279 1.20099 1.21059 1.22183 1.19780 0.90393 0.96620 0.86231 1.29115 1.03829 0.91948 0.97359 1.66060 1.15882 1.14938 1.24489 1.21896 0.96335 0.96060 1.02447 1.96627 1.84660 1.12405 1.97372 1.27208 1.07760 0.95528 1.07431 1.83439 1.17906 1.13843 1.41099 0.90666 0.95356 0.93094 0.91948 0.93842 0.93638 0.88681 0.90829 0.77037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 10.20 71.98 0.73 -4.69 15 2 C 0.13 5.08 6.44 86.38 0.56 5.64 15 3 N -0.58 -27.53 2.45 -706.34 -1.73 -29.26 15 4 C -0.26 -14.06 9.48 84.03 0.80 -13.26 15 5 H 0.05 2.84 7.93 -2.91 -0.02 2.82 15 6 C -0.02 -0.92 4.94 84.86 0.42 -0.50 15 7 N -0.90 -51.81 11.30 21.65 0.24 -51.56 15 8 Si 0.94 46.55 29.61 68.60 2.03 48.59 15 9 H -0.28 -13.48 7.11 99.48 0.71 -12.77 15 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 15 11 H -0.29 -15.04 7.11 99.48 0.71 -14.33 15 12 C 0.20 9.05 5.91 85.63 0.51 9.56 15 13 C 0.06 2.42 6.89 88.52 0.61 3.03 15 14 N -0.50 -21.95 10.55 -186.39 -1.97 -23.91 15 15 C 0.04 1.59 7.18 83.67 0.60 2.19 15 16 Br 0.01 0.22 33.99 -20.37 -0.69 -0.47 15 17 C -0.24 -6.75 11.20 66.79 0.75 -6.00 15 18 S 0.18 5.33 21.25 -56.49 -1.20 4.13 15 19 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.03 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.05 1.64 5.97 -2.38 -0.01 1.62 15 22 H 0.06 2.08 7.83 -2.39 -0.02 2.06 15 23 H 0.04 1.72 8.09 -2.39 -0.02 1.70 15 24 H 0.25 14.17 8.31 -92.71 -0.77 13.40 15 25 H 0.10 5.12 5.29 -2.39 -0.01 5.10 15 26 H 0.07 2.90 7.86 -2.39 -0.02 2.88 15 27 H 0.21 4.28 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -62.54 268.34 2.84 -59.70 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: 1.18 Total: -3.19 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.97 Total: -4.03 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -3.45 Total: -104.73 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.20 Total: 4.13 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.69 Total: -0.47 kcal Total: -62.54 2.84 -59.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308609960.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.397 kcal (2) G-P(sol) polarization free energy of solvation -62.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds