Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46864 * 2 1 4 4 C 1.53001 * 109.47206 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47011 * 64.99917 * 4 2 1 6 6 C 1.38246 * 119.99590 * 90.00270 * 5 4 2 7 7 C 1.38235 * 119.99493 * 180.02562 * 6 5 4 8 8 C 1.38227 * 120.00419 * 359.95661 * 7 6 5 9 9 C 1.50706 * 120.00107 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46660 * 359.97438 * 9 8 7 11 11 C 1.52995 * 109.46920 * 239.99617 * 9 8 7 12 12 C 1.53000 * 109.47001 * 119.99786 * 9 8 7 13 13 H 1.08999 * 109.47446 * 60.00441 * 12 9 8 14 14 C 1.52995 * 109.47146 * 299.99693 * 12 9 8 15 15 N 1.46906 * 109.46965 * 180.02562 * 12 9 8 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 9 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00458 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99662 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00066 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47237 * 90.00089 * 21 19 17 23 23 H 1.48504 * 109.46698 * 210.00151 * 21 19 17 24 24 H 1.48502 * 109.46787 * 330.00064 * 21 19 17 25 25 C 1.38234 * 119.99814 * 0.27206 * 8 7 6 26 26 C 1.38227 * 120.00284 * 359.51647 * 25 8 7 27 27 H 1.08998 * 109.47108 * 60.00257 * 1 2 3 28 28 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47519 * 299.99772 * 1 2 3 30 30 H 1.09000 * 109.47519 * 240.00228 * 2 1 3 31 31 H 1.09007 * 109.46949 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47048 * 299.99780 * 3 2 1 33 33 H 1.09000 * 109.46899 * 60.00384 * 3 2 1 34 34 H 1.09000 * 109.47067 * 305.00047 * 4 2 1 35 35 H 1.09003 * 109.47356 * 185.00371 * 4 2 1 36 36 H 1.08001 * 119.99855 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.99269 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.46959 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.47311 * 300.00036 * 11 9 8 40 40 H 1.09003 * 109.47335 * 60.00157 * 11 9 8 41 41 H 1.09002 * 109.46959 * 60.00507 * 14 12 9 42 42 H 1.09003 * 109.47335 * 180.02562 * 14 12 9 43 43 H 1.09002 * 109.47311 * 300.00221 * 14 12 9 44 44 H 1.00902 * 110.99923 * 328.95894 * 15 12 9 45 45 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 46 46 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 47 47 H 0.96997 * 119.99893 * 180.02562 * 20 19 17 48 48 H 1.08012 * 119.99886 * 179.72976 * 25 8 7 49 49 H 1.08002 * 120.00594 * 180.24579 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1732 1.1889 6 6 2.4815 -3.0966 0.5950 7 6 2.1155 -4.4284 0.5392 8 6 0.9100 -4.8371 1.0780 9 6 0.5113 -6.2893 1.0176 10 1 1.2930 -6.8600 0.5164 11 6 -0.7986 -6.4265 0.2391 12 6 0.3191 -6.8248 2.4379 13 1 -0.4628 -6.2540 2.9387 14 6 1.6290 -6.6876 3.2163 15 7 -0.0689 -8.2405 2.3790 16 6 -0.8161 -8.6319 3.5817 17 6 -1.1956 -10.0872 3.4857 18 1 -0.9106 -10.6636 2.6179 19 6 -1.9075 -10.6827 4.5053 20 7 -2.2382 -11.9529 4.4218 21 14 -2.4010 -9.6857 6.0060 22 1 -3.7307 -9.0668 5.7738 23 1 -2.4702 -10.5773 7.1916 24 1 -1.3942 -8.6206 6.2456 25 6 0.0678 -3.9131 1.6676 26 6 0.4355 -2.5820 1.7273 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 3.4234 -2.7771 0.1740 37 1 2.7718 -5.1497 0.0749 38 1 -1.0867 -7.4768 0.1951 39 1 -1.5805 -5.8556 0.7400 40 1 -0.6617 -6.0450 -0.7727 41 1 1.9173 -5.6373 3.2600 42 1 1.4922 -7.0695 4.2280 43 1 2.4109 -7.2585 2.7154 44 1 -0.6003 -8.4353 1.5437 45 1 -0.1936 -8.4765 4.4628 46 1 -1.7181 -8.0254 3.6626 47 1 -2.7394 -12.3716 5.1390 48 1 -0.8762 -4.2318 2.0847 49 1 -0.2207 -1.8607 2.1915 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308722870.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = -9.875444 kcal Electronic energy + Delta-G solvation = -22956.603955 eV Core-core repulsion = 19881.997431 eV Total energy + Delta-G solvation = -3074.606524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97980 -37.69442 -36.06630 -33.56102 -32.12637 -30.96222 -30.22563 -29.48053 -27.44754 -26.84026 -26.01051 -23.43565 -22.80588 -21.75587 -20.73155 -20.24215 -19.36445 -16.81023 -16.44726 -15.85930 -15.38340 -15.04487 -14.66197 -14.53512 -14.39910 -13.92964 -13.60741 -13.44970 -13.41775 -12.99384 -12.75604 -12.54397 -12.46729 -12.39019 -12.18207 -11.99813 -11.81204 -11.60716 -11.49201 -11.25150 -11.13204 -11.07263 -10.92796 -10.76774 -10.71992 -10.58877 -10.44218 -9.98707 -9.73557 -9.22628 -8.88866 -8.58795 -8.42815 -7.43654 -6.04711 -4.02216 1.35169 1.42300 3.28822 3.36499 3.39925 3.73640 4.43091 4.50114 4.55616 4.67846 4.72275 4.84570 4.99083 5.04460 5.08659 5.22836 5.27061 5.29651 5.33422 5.36215 5.38343 5.48636 5.52767 5.55259 5.60255 5.61730 5.71689 5.79912 5.80465 5.95119 6.00405 6.03373 6.04766 6.08879 6.11177 6.15979 6.27245 6.36703 6.48358 6.52089 6.59762 6.67361 6.77330 6.86398 7.02291 7.05933 7.65521 7.94360 8.39704 8.67522 9.03525 9.57669 11.08620 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.002887 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.978976 B = 9696.646115 C = 9952.152296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.061 4.061 9 C -0.056 4.056 10 H 0.084 0.916 11 C -0.148 4.148 12 C 0.090 3.910 13 H 0.034 0.966 14 C -0.135 4.135 15 N -0.677 5.677 16 C 0.165 3.835 17 C -0.514 4.514 18 H 0.079 0.921 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.267 1.267 25 C -0.113 4.113 26 C -0.114 4.114 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.335 0.665 45 H 0.026 0.974 46 H -0.022 1.022 47 H 0.263 0.737 48 H 0.119 0.881 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 25.383 -9.244 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.091 4.091 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.062 4.062 9 C -0.075 4.075 10 H 0.103 0.897 11 C -0.206 4.206 12 C -0.020 4.020 13 H 0.052 0.948 14 C -0.193 4.193 15 N -0.310 5.310 16 C 0.037 3.963 17 C -0.552 4.552 18 H 0.097 0.903 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.704 3.296 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.131 4.131 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.155 0.845 45 H 0.044 0.956 46 H -0.005 1.005 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.476 24.998 -8.895 27.855 hybrid contribution -1.218 0.780 0.791 1.649 sum 7.258 25.778 -8.104 27.980 Atomic orbital electron populations 1.21922 0.95151 1.02360 1.01384 1.21080 0.96173 0.95668 0.98020 1.21859 1.00877 0.96012 1.01753 1.20653 1.00896 0.91421 0.98220 1.19761 0.94931 0.95209 0.99172 1.20950 0.99383 0.93031 1.00170 1.21047 0.96289 0.95740 1.00167 1.19832 0.94127 0.95286 0.96938 1.20372 0.98632 0.91475 0.97007 0.89740 1.21903 0.96516 1.02479 0.99666 1.21509 0.96899 0.90404 0.93198 0.94793 1.21757 0.97300 0.99839 1.00396 1.60604 1.48848 1.15203 1.06366 1.20025 0.90582 0.96396 0.89254 1.21074 1.34166 0.93436 1.06570 0.90330 1.24911 0.95557 0.94823 0.98093 1.69902 1.39640 1.10909 1.33531 0.86834 0.79254 0.80430 0.83055 1.20382 1.21161 1.19146 1.21015 0.99774 0.92826 0.99477 1.20968 0.96266 0.95706 1.00254 0.93006 0.91951 0.92839 0.91171 0.92743 0.92711 0.92702 0.91218 0.91237 0.86554 0.86212 0.91411 0.92725 0.92622 0.93458 0.92855 0.92386 0.84478 0.95592 1.00481 0.92690 0.86292 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.76 37.16 0.33 -0.82 16 2 C -0.09 -0.66 2.91 -90.62 -0.26 -0.93 16 3 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 4 C -0.07 -0.59 4.84 -27.88 -0.13 -0.73 16 5 C -0.09 -0.91 4.71 -104.62 -0.49 -1.41 16 6 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 7 C -0.11 -1.31 9.67 -39.59 -0.38 -1.70 16 8 C -0.06 -0.77 3.52 -104.62 -0.37 -1.14 16 9 C -0.06 -0.78 2.29 -91.77 -0.21 -0.99 16 10 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 11 C -0.15 -1.95 8.77 37.16 0.33 -1.62 16 12 C 0.09 1.53 2.05 -67.71 -0.14 1.39 16 13 H 0.03 0.60 7.06 -51.93 -0.37 0.24 16 14 C -0.13 -2.22 9.17 37.16 0.34 -1.88 16 15 N -0.68 -14.06 6.30 -107.99 -0.68 -14.74 16 16 C 0.17 4.07 4.31 -4.97 -0.02 4.05 16 17 C -0.51 -14.87 9.87 -34.44 -0.34 -15.21 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 21 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 25 C -0.11 -1.39 8.71 -39.59 -0.34 -1.73 16 26 C -0.11 -1.23 7.96 -39.59 -0.32 -1.55 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.54 6.27 -51.93 -0.33 0.22 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.24 7.95 -52.48 -0.42 0.82 16 38 H 0.07 0.95 6.21 -51.93 -0.32 0.62 16 39 H 0.05 0.71 7.37 -51.93 -0.38 0.33 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 42 H 0.05 0.95 7.45 -51.93 -0.39 0.57 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.34 6.68 6.16 -39.29 -0.24 6.44 16 45 H 0.03 0.66 6.49 -51.93 -0.34 0.33 16 46 H -0.02 -0.55 7.48 -51.93 -0.39 -0.94 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.12 1.46 7.10 -52.48 -0.37 1.09 16 49 H 0.12 1.09 8.04 -52.49 -0.42 0.67 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -30.57 378.81 -10.01 -40.58 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.98 Total: 2.86 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.16 Total: -24.50 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.09 Total: -41.88 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.57 -10.01 -40.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722870.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.707 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds