Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46864 * 2 1 4 4 C 1.53001 * 109.47206 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47011 * 64.99917 * 4 2 1 6 6 C 1.38246 * 119.99590 * 90.00270 * 5 4 2 7 7 C 1.38235 * 119.99493 * 180.02562 * 6 5 4 8 8 C 1.38227 * 120.00419 * 359.95661 * 7 6 5 9 9 C 1.50706 * 120.00107 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46660 * 359.97438 * 9 8 7 11 11 C 1.52995 * 109.46920 * 239.99617 * 9 8 7 12 12 C 1.53000 * 109.47001 * 119.99786 * 9 8 7 13 13 H 1.08999 * 109.47446 * 60.00441 * 12 9 8 14 14 C 1.52995 * 109.47146 * 299.99693 * 12 9 8 15 15 N 1.46906 * 109.46965 * 180.02562 * 12 9 8 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 9 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00458 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99662 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00066 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47237 * 90.00089 * 21 19 17 23 23 H 1.48504 * 109.46698 * 210.00151 * 21 19 17 24 24 H 1.48502 * 109.46787 * 330.00064 * 21 19 17 25 25 C 1.38234 * 119.99814 * 0.27206 * 8 7 6 26 26 C 1.38227 * 120.00284 * 359.51647 * 25 8 7 27 27 H 1.08998 * 109.47108 * 60.00257 * 1 2 3 28 28 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47519 * 299.99772 * 1 2 3 30 30 H 1.09000 * 109.47519 * 240.00228 * 2 1 3 31 31 H 1.09007 * 109.46949 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47048 * 299.99780 * 3 2 1 33 33 H 1.09000 * 109.46899 * 60.00384 * 3 2 1 34 34 H 1.09000 * 109.47067 * 305.00047 * 4 2 1 35 35 H 1.09003 * 109.47356 * 185.00371 * 4 2 1 36 36 H 1.08001 * 119.99855 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.99269 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.46959 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.47311 * 300.00036 * 11 9 8 40 40 H 1.09003 * 109.47335 * 60.00157 * 11 9 8 41 41 H 1.09002 * 109.46959 * 60.00507 * 14 12 9 42 42 H 1.09003 * 109.47335 * 180.02562 * 14 12 9 43 43 H 1.09002 * 109.47311 * 300.00221 * 14 12 9 44 44 H 1.00902 * 110.99923 * 328.95894 * 15 12 9 45 45 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 46 46 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 47 47 H 0.96997 * 119.99893 * 180.02562 * 20 19 17 48 48 H 1.08012 * 119.99886 * 179.72976 * 25 8 7 49 49 H 1.08002 * 120.00594 * 180.24579 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1732 1.1889 6 6 2.4815 -3.0966 0.5950 7 6 2.1155 -4.4284 0.5392 8 6 0.9100 -4.8371 1.0780 9 6 0.5113 -6.2893 1.0176 10 1 1.2930 -6.8600 0.5164 11 6 -0.7986 -6.4265 0.2391 12 6 0.3191 -6.8248 2.4379 13 1 -0.4628 -6.2540 2.9387 14 6 1.6290 -6.6876 3.2163 15 7 -0.0689 -8.2405 2.3790 16 6 -0.8161 -8.6319 3.5817 17 6 -1.1956 -10.0872 3.4857 18 1 -0.9106 -10.6636 2.6179 19 6 -1.9075 -10.6827 4.5053 20 7 -2.2382 -11.9529 4.4218 21 14 -2.4010 -9.6857 6.0060 22 1 -3.7307 -9.0668 5.7738 23 1 -2.4702 -10.5773 7.1916 24 1 -1.3942 -8.6206 6.2456 25 6 0.0678 -3.9131 1.6676 26 6 0.4355 -2.5820 1.7273 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 3.4234 -2.7771 0.1740 37 1 2.7718 -5.1497 0.0749 38 1 -1.0867 -7.4768 0.1951 39 1 -1.5805 -5.8556 0.7400 40 1 -0.6617 -6.0450 -0.7727 41 1 1.9173 -5.6373 3.2600 42 1 1.4922 -7.0695 4.2280 43 1 2.4109 -7.2585 2.7154 44 1 -0.6003 -8.4353 1.5437 45 1 -0.1936 -8.4765 4.4628 46 1 -1.7181 -8.0254 3.6626 47 1 -2.7394 -12.3716 5.1390 48 1 -0.8762 -4.2318 2.0847 49 1 -0.2207 -1.8607 2.1915 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308722870.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = -25.680257 kcal Electronic energy + Delta-G solvation = -22957.289303 eV Core-core repulsion = 19881.997431 eV Total energy + Delta-G solvation = -3075.291873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88461 -38.81226 -36.98550 -35.24334 -33.85715 -31.79820 -31.39483 -30.75549 -28.52646 -27.97669 -27.01408 -24.62313 -23.75118 -23.29252 -22.03724 -20.93980 -20.50529 -18.91843 -17.42701 -17.01145 -16.63783 -16.14939 -15.93185 -15.44960 -15.27881 -15.17653 -14.96346 -14.61752 -14.40980 -14.23934 -14.11143 -13.89545 -13.55270 -13.42667 -13.10964 -13.00401 -12.85298 -12.81571 -12.61078 -12.50774 -12.39085 -12.18713 -12.01492 -11.79618 -11.73851 -11.67988 -11.48613 -11.46388 -11.38287 -11.19671 -10.82908 -9.73551 -9.32857 -9.11069 -8.31570 -6.35547 0.49109 0.57583 1.31769 1.34191 1.45551 2.32081 2.87800 3.02165 3.42598 3.77396 3.84423 3.97830 3.99014 4.10281 4.14771 4.20701 4.23224 4.40246 4.41721 4.53543 4.58824 4.64311 4.73347 4.80099 4.81393 4.84116 4.86912 4.89191 4.93342 4.98842 5.00127 5.08913 5.09224 5.11130 5.16007 5.19320 5.26368 5.28654 5.35303 5.38477 5.45641 5.50465 5.55871 5.61979 5.80590 5.84029 5.98305 6.19353 6.57980 6.66876 6.78482 7.29458 8.85090 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.002887 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.978976 B = 9696.646115 C = 9952.152296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.088 4.088 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.074 4.074 9 C -0.046 4.046 10 H 0.084 0.916 11 C -0.146 4.146 12 C 0.091 3.909 13 H 0.029 0.971 14 C -0.129 4.129 15 N -0.685 5.685 16 C 0.178 3.822 17 C -0.526 4.526 18 H 0.038 0.962 19 C 0.008 3.992 20 N -0.946 5.946 21 Si 0.949 3.051 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.254 1.254 25 C -0.125 4.125 26 C -0.118 4.118 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.338 0.662 45 H 0.021 0.979 46 H -0.019 1.019 47 H 0.268 0.732 48 H 0.113 0.887 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.714 28.440 -8.949 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.110 4.110 5 C -0.088 4.088 6 C -0.138 4.138 7 C -0.138 4.138 8 C -0.075 4.075 9 C -0.064 4.064 10 H 0.102 0.898 11 C -0.203 4.203 12 C -0.019 4.019 13 H 0.047 0.953 14 C -0.186 4.186 15 N -0.318 5.318 16 C 0.049 3.951 17 C -0.564 4.564 18 H 0.057 0.943 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.177 1.177 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.158 0.842 45 H 0.039 0.961 46 H -0.001 1.001 47 H 0.077 0.923 48 H 0.131 0.869 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.226 28.072 -8.620 30.781 hybrid contribution -1.403 -0.163 0.597 1.533 sum 7.824 27.909 -8.023 30.074 Atomic orbital electron populations 1.21919 0.95492 1.01568 1.01833 1.21048 0.95840 0.96351 0.97422 1.21834 1.01255 0.95082 1.02085 1.20690 1.01596 0.89978 0.98715 1.20039 0.94365 0.96376 0.97979 1.21218 1.00197 0.92574 0.99800 1.21205 0.95941 0.96621 1.00065 1.19690 0.95028 0.94251 0.98533 1.20215 0.98909 0.92536 0.94772 0.89774 1.21875 0.96238 1.01623 1.00568 1.21585 0.96811 0.87962 0.95561 0.95292 1.21698 0.96931 1.00916 0.99095 1.60506 1.48076 1.18148 1.05116 1.19738 0.90869 0.93719 0.90727 1.21333 1.34235 0.95451 1.05411 0.94338 1.25863 0.95446 0.95953 1.01665 1.70049 1.40690 1.12905 1.34971 0.85695 0.79519 0.79026 0.78569 1.19037 1.20443 1.17743 1.21061 0.99691 0.93573 1.00018 1.21138 0.96849 0.95335 1.00248 0.92653 0.93301 0.92368 0.91705 0.92147 0.92409 0.92381 0.90726 0.90217 0.84545 0.85335 0.92729 0.92801 0.90999 0.91600 0.94644 0.92377 0.84180 0.96063 1.00101 0.92339 0.86933 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.76 71.98 0.63 -1.36 16 2 C -0.09 -1.07 2.91 -10.79 -0.03 -1.10 16 3 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 4 C -0.07 -0.95 4.84 29.85 0.14 -0.81 16 5 C -0.09 -1.55 4.71 -19.86 -0.09 -1.65 16 6 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 7 C -0.12 -2.53 9.67 22.27 0.22 -2.31 16 8 C -0.07 -1.78 3.52 -19.87 -0.07 -1.85 16 9 C -0.05 -1.23 2.29 -11.54 -0.03 -1.25 16 10 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 11 C -0.15 -3.75 8.77 71.98 0.63 -3.12 16 12 C 0.09 3.03 2.05 44.91 0.09 3.12 16 13 H 0.03 1.01 7.06 -2.39 -0.02 1.00 16 14 C -0.13 -4.11 9.17 71.98 0.66 -3.45 16 15 N -0.69 -28.70 6.30 -495.58 -3.12 -31.82 16 16 C 0.18 8.81 4.31 85.56 0.37 9.17 16 17 C -0.53 -31.20 9.87 25.60 0.25 -30.95 16 18 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 19 C 0.01 0.50 5.47 84.65 0.46 0.96 16 20 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 21 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 25 C -0.13 -2.92 8.71 22.27 0.19 -2.73 16 26 C -0.12 -2.33 7.96 22.27 0.18 -2.16 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.78 6.27 -2.39 -0.01 0.76 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 35 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.13 2.41 7.95 -2.91 -0.02 2.38 16 38 H 0.05 1.53 6.21 -2.39 -0.01 1.52 16 39 H 0.05 1.38 7.37 -2.39 -0.02 1.36 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.85 7.22 -2.39 -0.02 1.83 16 42 H 0.03 1.23 7.45 -2.39 -0.02 1.22 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.34 13.76 6.16 -89.69 -0.55 13.21 16 45 H 0.02 1.08 6.49 -2.39 -0.02 1.06 16 46 H -0.02 -0.90 7.48 -2.39 -0.02 -0.92 16 47 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 48 H 0.11 2.70 7.10 -2.90 -0.02 2.68 16 49 H 0.13 2.17 8.04 -2.91 -0.02 2.14 16 Total: -1.00 -66.03 378.81 3.83 -62.20 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.28 Total: 24.45 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 4.49 Total: -42.18 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -2.82 Total: -91.41 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -66.03 3.83 -62.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722870.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.521 kcal (2) G-P(sol) polarization free energy of solvation -66.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds