Wall clock time and date at job start Tue Mar 31 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 C 1.52999 * 109.47127 * 120.00367 * 2 1 3 5 5 C 1.50703 * 109.47211 * 175.00300 * 4 2 1 6 6 C 1.38237 * 120.00252 * 89.99723 * 5 4 2 7 7 C 1.38235 * 119.99988 * 180.02562 * 6 5 4 8 8 C 1.38233 * 119.99795 * 359.95489 * 7 6 5 9 9 C 1.50703 * 119.99531 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47289 * 359.04319 * 9 8 7 11 11 C 1.53004 * 109.47114 * 119.04339 * 9 8 7 12 12 C 1.52997 * 109.47238 * 239.04150 * 9 8 7 13 13 H 1.09003 * 109.47131 * 298.75546 * 12 9 8 14 14 C 1.52998 * 109.47253 * 178.75314 * 12 9 8 15 15 N 1.46902 * 109.46880 * 58.75363 * 12 9 8 16 16 C 1.46900 * 111.00086 * 204.99798 * 15 12 9 17 17 C 1.50701 * 109.47108 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00256 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99769 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99783 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46848 * 119.99680 * 21 19 17 24 24 H 1.48497 * 109.46759 * 239.99856 * 21 19 17 25 25 C 1.38228 * 120.00442 * 0.27248 * 8 7 6 26 26 C 1.38234 * 119.99763 * 359.52129 * 25 8 7 27 27 H 1.08999 * 109.47231 * 299.99741 * 1 2 3 28 28 H 1.08998 * 109.47312 * 60.00415 * 1 2 3 29 29 H 1.09005 * 109.46712 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47231 * 240.00259 * 2 1 3 31 31 H 1.08996 * 109.47406 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47107 * 300.00206 * 3 2 1 33 33 H 1.08999 * 109.46895 * 60.00054 * 3 2 1 34 34 H 1.08997 * 109.47741 * 54.99911 * 4 2 1 35 35 H 1.09005 * 109.47072 * 295.00040 * 4 2 1 36 36 H 1.08003 * 120.00036 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.99670 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47240 * 59.99579 * 11 9 8 39 39 H 1.08999 * 109.47028 * 180.02562 * 11 9 8 40 40 H 1.09003 * 109.46893 * 299.99855 * 11 9 8 41 41 H 1.09007 * 109.47072 * 65.84705 * 14 12 9 42 42 H 1.09003 * 109.47539 * 305.84927 * 14 12 9 43 43 H 1.09001 * 109.47356 * 185.84164 * 14 12 9 44 44 H 1.00896 * 111.00374 * 328.96048 * 15 12 9 45 45 H 1.09001 * 109.47058 * 300.00638 * 16 15 12 46 46 H 1.09007 * 109.46915 * 60.00243 * 16 15 12 47 47 H 0.97001 * 119.99805 * 179.97438 * 20 19 17 48 48 H 1.07997 * 120.00233 * 179.72484 * 25 8 7 49 49 H 1.07999 * 120.00283 * 180.24878 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3291 0.1712 1.7274 7 6 5.7068 0.0723 1.6716 8 6 6.2972 -1.0277 1.0781 9 6 7.7992 -1.1358 1.0178 10 1 8.2457 -0.2522 1.4738 11 6 8.2515 -2.3851 1.7766 12 6 8.2450 -1.2367 -0.4423 13 1 7.8164 -2.1323 -0.8921 14 6 9.7717 -1.3151 -0.5051 15 7 7.7849 -0.0512 -1.1778 16 6 7.6482 -0.3412 -2.6113 17 6 7.1761 0.8957 -3.3313 18 1 6.9962 1.8063 -2.7793 19 6 6.9740 0.8647 -4.6949 20 7 7.1936 -0.2440 -5.3672 21 14 6.3896 2.3981 -5.5874 22 1 6.2182 3.5040 -4.6113 23 1 7.3942 2.7897 -6.6084 24 1 5.0911 2.1193 -6.2519 25 6 5.5101 -2.0260 0.5354 26 6 4.1325 -1.9292 0.5950 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.8678 1.0307 2.1911 37 1 6.3218 0.8542 2.0920 38 1 7.8050 -3.2687 1.3206 39 1 9.3378 -2.4630 1.7333 40 1 7.9338 -2.3132 2.8168 41 1 10.1067 -2.2472 -0.0499 42 1 10.2015 -0.4718 0.0355 43 1 10.0947 -1.2824 -1.5457 44 1 6.9191 0.2982 -0.7953 45 1 8.6133 -0.6493 -3.0134 46 1 6.9233 -1.1430 -2.7522 47 1 7.0511 -0.2659 -6.3264 48 1 5.9714 -2.8833 0.0677 49 1 3.5174 -2.7111 0.1745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308722871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:00 Heat of formation + Delta-G solvation = -15.718391 kcal Electronic energy + Delta-G solvation = -23647.712554 eV Core-core repulsion = 20572.852660 eV Total energy + Delta-G solvation = -3074.859894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76950 -37.45807 -35.70793 -33.52727 -31.97535 -30.81637 -30.47603 -28.41128 -27.12667 -26.64583 -25.72059 -23.57432 -22.60854 -21.63162 -20.76555 -19.89442 -19.19870 -16.50162 -16.27812 -15.35246 -15.16192 -14.92459 -14.65188 -14.38873 -14.21571 -13.80929 -13.54801 -13.17916 -12.98977 -12.92438 -12.53291 -12.27936 -12.23697 -12.02904 -11.92471 -11.76805 -11.45927 -11.41672 -11.28626 -11.16019 -10.93753 -10.83064 -10.76122 -10.69034 -10.59049 -10.50847 -10.28866 -10.01218 -9.70353 -9.08135 -8.63953 -8.43172 -8.20504 -7.17887 -5.98258 -3.99003 1.57780 1.66941 3.33176 3.40202 3.45703 3.96765 4.47004 4.77572 4.82253 4.94709 4.97786 4.99613 5.19075 5.24451 5.33704 5.36301 5.38348 5.48358 5.61822 5.62474 5.66369 5.68429 5.75408 5.79939 5.82034 5.87823 5.90096 5.99056 6.00453 6.08050 6.12952 6.19579 6.24504 6.34161 6.34224 6.37675 6.40142 6.46047 6.63409 6.68679 6.83755 6.84332 6.94961 7.26432 7.36118 7.51823 7.86136 8.21144 8.51777 8.72399 9.10993 9.65473 11.13032 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009212 B = 0.006127 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.777960 B = 4568.673949 C = 6968.770043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.073 4.073 9 C -0.055 4.055 10 H 0.081 0.919 11 C -0.140 4.140 12 C 0.091 3.909 13 H 0.034 0.966 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.196 3.804 17 C -0.508 4.508 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.107 4.107 26 C -0.115 4.115 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.330 0.670 45 H 0.026 0.974 46 H -0.016 1.016 47 H 0.259 0.741 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -3.173 16.091 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.110 4.110 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.073 4.073 9 C -0.074 4.074 10 H 0.099 0.901 11 C -0.198 4.198 12 C -0.020 4.020 13 H 0.052 0.948 14 C -0.194 4.194 15 N -0.317 5.317 16 C 0.070 3.930 17 C -0.547 4.547 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.125 4.125 26 C -0.133 4.133 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.044 0.956 46 H 0.001 0.999 47 H 0.069 0.931 48 H 0.135 0.865 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.054 -2.974 15.833 17.587 hybrid contribution -1.109 0.221 -0.821 1.398 sum -8.163 -2.753 15.012 17.309 Atomic orbital electron populations 1.21846 0.95403 1.01440 1.01640 1.21095 0.95088 0.96867 0.98133 1.21911 1.02269 0.95416 1.01192 1.20638 0.91338 1.00762 0.98216 1.19759 0.95272 0.94761 0.98882 1.20935 0.93514 0.98236 1.00570 1.21031 0.94625 0.97482 0.99863 1.19844 0.95454 0.94404 0.97635 1.20408 0.90749 0.99268 0.96959 0.90064 1.21848 1.01294 0.97173 0.99503 1.21470 0.95554 0.93729 0.91238 0.94827 1.21805 0.95462 0.99997 1.02166 1.60735 1.36117 1.29252 1.05562 1.19548 0.95829 0.95665 0.81988 1.21225 1.43809 0.97314 0.92331 0.92112 1.24970 0.95810 0.96186 0.97580 1.69975 1.49755 1.26356 1.07765 0.86488 0.78237 0.83328 0.79667 1.19672 1.21019 1.21148 1.20947 0.93467 0.98959 0.99148 1.20940 0.94678 0.97968 0.99710 0.92895 0.92654 0.92900 0.90835 0.91614 0.92830 0.93160 0.91428 0.91397 0.86541 0.86258 0.92739 0.92019 0.92960 0.93573 0.92722 0.92319 0.85197 0.95552 0.99872 0.93094 0.86524 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.09 -1.07 2.91 -90.62 -0.26 -1.33 16 3 C -0.15 -1.81 8.76 37.16 0.33 -1.49 16 4 C -0.07 -0.78 4.84 -27.88 -0.13 -0.92 16 5 C -0.09 -1.13 4.71 -104.62 -0.49 -1.63 16 6 C -0.11 -1.50 7.96 -39.58 -0.32 -1.82 16 7 C -0.11 -1.57 9.52 -39.58 -0.38 -1.95 16 8 C -0.07 -1.09 3.41 -104.63 -0.36 -1.45 16 9 C -0.06 -0.80 2.30 -91.77 -0.21 -1.01 16 10 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 11 C -0.14 -1.70 8.70 37.16 0.32 -1.38 16 12 C 0.09 1.63 2.02 -67.71 -0.14 1.49 16 13 H 0.03 0.65 7.02 -51.93 -0.36 0.29 16 14 C -0.14 -2.27 8.95 37.16 0.33 -1.94 16 15 N -0.69 -15.12 6.30 -107.99 -0.68 -15.80 16 16 C 0.20 5.29 5.24 -4.98 -0.03 5.27 16 17 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 18 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 21 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C -0.11 -1.62 8.73 -39.59 -0.35 -1.97 16 26 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.91 6.26 -51.93 -0.33 0.58 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.12 1.31 8.04 -52.48 -0.42 0.89 16 37 H 0.12 1.51 7.95 -52.49 -0.42 1.10 16 38 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 39 H 0.06 0.69 6.59 -51.93 -0.34 0.35 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.64 6.78 -51.93 -0.35 0.29 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.10 7.34 -51.93 -0.38 0.72 16 44 H 0.33 7.24 6.94 -39.29 -0.27 6.97 16 45 H 0.03 0.76 7.35 -51.93 -0.38 0.38 16 46 H -0.02 -0.48 8.06 -51.93 -0.42 -0.89 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.12 1.74 7.12 -52.49 -0.37 1.36 16 49 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -30.54 382.43 -10.38 -40.92 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -9.04 Total: 5.32 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -2.14 Total: -26.74 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.06 Total: -42.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.54 -10.38 -40.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.201 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds