Wall clock time and date at job start Tue Mar 31 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47044 * 2 1 4 4 C 1.52999 * 109.47127 * 120.00367 * 2 1 3 5 5 C 1.50703 * 109.47211 * 175.00300 * 4 2 1 6 6 C 1.38237 * 120.00252 * 89.99723 * 5 4 2 7 7 C 1.38235 * 119.99988 * 180.02562 * 6 5 4 8 8 C 1.38233 * 119.99795 * 359.95489 * 7 6 5 9 9 C 1.50703 * 119.99531 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47289 * 359.04319 * 9 8 7 11 11 C 1.53004 * 109.47114 * 119.04339 * 9 8 7 12 12 C 1.52997 * 109.47238 * 239.04150 * 9 8 7 13 13 H 1.09003 * 109.47131 * 298.75546 * 12 9 8 14 14 C 1.52998 * 109.47253 * 178.75314 * 12 9 8 15 15 N 1.46902 * 109.46880 * 58.75363 * 12 9 8 16 16 C 1.46900 * 111.00086 * 204.99798 * 15 12 9 17 17 C 1.50701 * 109.47108 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00256 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99769 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99783 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46848 * 119.99680 * 21 19 17 24 24 H 1.48497 * 109.46759 * 239.99856 * 21 19 17 25 25 C 1.38228 * 120.00442 * 0.27248 * 8 7 6 26 26 C 1.38234 * 119.99763 * 359.52129 * 25 8 7 27 27 H 1.08999 * 109.47231 * 299.99741 * 1 2 3 28 28 H 1.08998 * 109.47312 * 60.00415 * 1 2 3 29 29 H 1.09005 * 109.46712 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47231 * 240.00259 * 2 1 3 31 31 H 1.08996 * 109.47406 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47107 * 300.00206 * 3 2 1 33 33 H 1.08999 * 109.46895 * 60.00054 * 3 2 1 34 34 H 1.08997 * 109.47741 * 54.99911 * 4 2 1 35 35 H 1.09005 * 109.47072 * 295.00040 * 4 2 1 36 36 H 1.08003 * 120.00036 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.99670 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47240 * 59.99579 * 11 9 8 39 39 H 1.08999 * 109.47028 * 180.02562 * 11 9 8 40 40 H 1.09003 * 109.46893 * 299.99855 * 11 9 8 41 41 H 1.09007 * 109.47072 * 65.84705 * 14 12 9 42 42 H 1.09003 * 109.47539 * 305.84927 * 14 12 9 43 43 H 1.09001 * 109.47356 * 185.84164 * 14 12 9 44 44 H 1.00896 * 111.00374 * 328.96048 * 15 12 9 45 45 H 1.09001 * 109.47058 * 300.00638 * 16 15 12 46 46 H 1.09007 * 109.46915 * 60.00243 * 16 15 12 47 47 H 0.97001 * 119.99805 * 179.97438 * 20 19 17 48 48 H 1.07997 * 120.00233 * 179.72484 * 25 8 7 49 49 H 1.07999 * 120.00283 * 180.24878 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3291 0.1712 1.7274 7 6 5.7068 0.0723 1.6716 8 6 6.2972 -1.0277 1.0781 9 6 7.7992 -1.1358 1.0178 10 1 8.2457 -0.2522 1.4738 11 6 8.2515 -2.3851 1.7766 12 6 8.2450 -1.2367 -0.4423 13 1 7.8164 -2.1323 -0.8921 14 6 9.7717 -1.3151 -0.5051 15 7 7.7849 -0.0512 -1.1778 16 6 7.6482 -0.3412 -2.6113 17 6 7.1761 0.8957 -3.3313 18 1 6.9962 1.8063 -2.7793 19 6 6.9740 0.8647 -4.6949 20 7 7.1936 -0.2440 -5.3672 21 14 6.3896 2.3981 -5.5874 22 1 6.2182 3.5040 -4.6113 23 1 7.3942 2.7897 -6.6084 24 1 5.0911 2.1193 -6.2519 25 6 5.5101 -2.0260 0.5354 26 6 4.1325 -1.9292 0.5950 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.8678 1.0307 2.1911 37 1 6.3218 0.8542 2.0920 38 1 7.8050 -3.2687 1.3206 39 1 9.3378 -2.4630 1.7333 40 1 7.9338 -2.3132 2.8168 41 1 10.1067 -2.2472 -0.0499 42 1 10.2015 -0.4718 0.0355 43 1 10.0947 -1.2824 -1.5457 44 1 6.9191 0.2982 -0.7953 45 1 8.6133 -0.6493 -3.0134 46 1 6.9233 -1.1430 -2.7522 47 1 7.0511 -0.2659 -6.3264 48 1 5.9714 -2.8833 0.0677 49 1 3.5174 -2.7111 0.1745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308722871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:00 Heat of formation + Delta-G solvation = -31.211571 kcal Electronic energy + Delta-G solvation = -23648.384388 eV Core-core repulsion = 20572.852660 eV Total energy + Delta-G solvation = -3075.531728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88816 -38.71749 -36.87358 -35.37348 -33.74467 -31.96261 -31.67670 -29.79740 -28.30452 -27.99334 -27.03100 -25.05085 -23.72437 -23.30959 -22.14986 -20.83014 -20.52231 -18.57793 -17.43590 -16.84840 -16.63420 -16.23039 -16.15540 -15.50277 -15.30103 -15.13529 -14.86804 -14.47562 -14.27724 -14.07962 -13.96085 -13.74894 -13.45925 -13.27757 -13.06685 -12.98059 -12.84758 -12.75485 -12.73961 -12.56919 -12.38128 -12.34963 -12.04097 -11.84491 -11.79380 -11.68194 -11.51976 -11.47445 -11.23182 -11.12954 -10.67589 -9.74021 -9.30379 -9.07208 -8.23761 -6.34344 0.48652 0.56786 1.37246 1.38040 1.51997 2.37851 2.87349 3.09293 3.53991 3.75086 3.87392 3.93271 3.99582 4.10517 4.16982 4.18802 4.38716 4.43089 4.46114 4.55066 4.61164 4.64957 4.73984 4.77747 4.82210 4.86062 4.87287 4.95588 5.00524 5.05886 5.07418 5.08211 5.11587 5.14337 5.19587 5.24272 5.29774 5.36055 5.38961 5.43888 5.45393 5.49055 5.61939 5.62525 5.79064 5.81629 6.04559 6.19230 6.49798 6.75701 6.90882 7.36405 8.88212 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009212 B = 0.006127 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.777960 B = 4568.673949 C = 6968.770043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.067 4.067 5 C -0.088 4.088 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.088 4.088 9 C -0.045 4.045 10 H 0.087 0.913 11 C -0.135 4.135 12 C 0.088 3.912 13 H 0.014 0.986 14 C -0.131 4.131 15 N -0.681 5.681 16 C 0.216 3.784 17 C -0.531 4.531 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.277 1.277 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.331 0.669 45 H -0.001 1.001 46 H -0.049 1.049 47 H 0.264 0.736 48 H 0.108 0.892 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -1.913 17.727 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.105 4.105 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.139 4.139 8 C -0.088 4.088 9 C -0.064 4.064 10 H 0.106 0.894 11 C -0.192 4.192 12 C -0.022 4.022 13 H 0.032 0.968 14 C -0.189 4.189 15 N -0.312 5.312 16 C 0.088 3.912 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.203 1.203 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.149 0.851 45 H 0.017 0.983 46 H -0.032 1.032 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.111 -1.721 17.493 19.358 hybrid contribution -0.782 -0.215 -1.317 1.546 sum -8.893 -1.936 16.176 18.561 Atomic orbital electron populations 1.21804 0.93603 1.02196 1.02269 1.21069 0.96575 0.96198 0.97353 1.21908 1.00825 0.96069 1.01953 1.20659 0.89577 1.01671 0.98544 1.20057 0.96740 0.94125 0.97882 1.21226 0.93292 0.98747 1.00095 1.21274 0.95417 0.97402 0.99816 1.19931 0.95573 0.94872 0.98428 1.20316 0.90796 1.00900 0.94366 0.89425 1.21813 1.02013 0.95544 0.99869 1.21602 0.96350 0.91178 0.93079 0.96753 1.21776 0.94254 1.02196 1.00693 1.60655 1.35930 1.31273 1.03321 1.19137 0.93115 0.94060 0.84899 1.21539 1.44445 0.97777 0.93134 0.92188 1.25926 0.95560 0.99680 0.98410 1.70102 1.50336 1.28676 1.08318 0.85346 0.77945 0.79084 0.78345 1.18689 1.20106 1.20276 1.21031 0.94242 0.99212 0.99967 1.21162 0.94510 0.98936 1.00134 0.91366 0.92919 0.92129 0.93467 0.93775 0.93436 0.91068 0.90374 0.89482 0.84389 0.84914 0.93109 0.90752 0.91375 0.90374 0.91686 0.95322 0.85115 0.98298 1.03175 0.92673 0.87418 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.09 -2.02 2.91 -10.79 -0.03 -2.06 16 3 C -0.15 -3.44 8.76 71.98 0.63 -2.81 16 4 C -0.07 -1.33 4.84 29.85 0.14 -1.18 16 5 C -0.09 -2.22 4.71 -19.86 -0.09 -2.32 16 6 C -0.12 -2.87 7.96 22.27 0.18 -2.69 16 7 C -0.12 -3.28 9.52 22.27 0.21 -3.06 16 8 C -0.09 -2.61 3.41 -19.87 -0.07 -2.68 16 9 C -0.05 -1.29 2.30 -11.54 -0.03 -1.31 16 10 H 0.09 2.40 7.88 -2.38 -0.02 2.38 16 11 C -0.13 -3.05 8.70 71.98 0.63 -2.43 16 12 C 0.09 3.23 2.02 44.91 0.09 3.32 16 13 H 0.01 0.59 7.02 -2.39 -0.02 0.57 16 14 C -0.13 -4.37 8.95 71.98 0.64 -3.72 16 15 N -0.68 -30.96 6.30 -495.57 -3.12 -34.08 16 16 C 0.22 12.20 5.24 85.56 0.45 12.65 16 17 C -0.53 -31.63 9.32 25.60 0.24 -31.39 16 18 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 19 C 0.00 0.13 5.46 84.66 0.46 0.59 16 20 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 21 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C -0.13 -3.93 8.73 22.27 0.19 -3.74 16 26 C -0.13 -3.69 9.70 22.27 0.22 -3.47 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.19 6.26 -2.39 -0.01 1.17 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 35 H 0.09 1.41 8.09 -2.38 -0.02 1.39 16 36 H 0.14 2.76 8.04 -2.91 -0.02 2.74 16 37 H 0.13 3.15 7.95 -2.91 -0.02 3.12 16 38 H 0.05 1.19 7.46 -2.39 -0.02 1.17 16 39 H 0.07 1.49 6.59 -2.39 -0.02 1.47 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 2.07 6.78 -2.38 -0.02 2.05 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.03 1.10 7.34 -2.39 -0.02 1.08 16 44 H 0.33 14.88 6.94 -89.70 -0.62 14.26 16 45 H 0.00 -0.07 7.35 -2.39 -0.02 -0.08 16 46 H -0.05 -3.05 8.06 -2.38 -0.02 -3.07 16 47 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.11 3.42 7.12 -2.91 -0.02 3.40 16 49 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.36 382.43 3.98 -63.38 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.27 Total: 28.89 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 4.53 Total: -48.04 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -2.84 Total: -91.98 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -67.36 3.98 -63.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.167 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds