Wall clock time and date at job start Tue Mar 31 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47452 * 2 1 4 4 C 1.53000 * 109.47145 * 120.00645 * 2 1 3 5 5 C 1.50696 * 109.47339 * 64.99398 * 4 2 1 6 6 C 1.38230 * 120.00121 * 269.72644 * 5 4 2 7 7 C 1.38236 * 120.00229 * 179.78931 * 6 5 4 8 8 C 1.38237 * 119.99539 * 0.44393 * 7 6 5 9 9 C 1.50701 * 119.99816 * 179.83425 * 8 7 6 10 10 H 1.09000 * 109.47276 * 182.57385 * 9 8 7 11 11 C 1.53008 * 109.47207 * 62.58035 * 9 8 7 12 12 C 1.52995 * 109.47160 * 302.57807 * 9 8 7 13 13 H 1.08999 * 109.47241 * 58.67662 * 12 9 8 14 14 C 1.53005 * 109.46952 * 178.67519 * 12 9 8 15 15 N 1.46892 * 109.47276 * 298.67516 * 12 9 8 16 16 C 1.46906 * 111.00163 * 154.99857 * 15 12 9 17 17 C 1.50700 * 109.47307 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99682 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00237 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46851 * 90.00452 * 21 19 17 23 23 H 1.48498 * 109.47397 * 210.00118 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00701 * 21 19 17 25 25 C 1.38231 * 119.99988 * 359.81046 * 8 7 6 26 26 C 1.38232 * 120.00568 * 359.97438 * 25 8 7 27 27 H 1.09000 * 109.47242 * 59.99304 * 1 2 3 28 28 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46991 * 299.99788 * 1 2 3 30 30 H 1.09003 * 109.46977 * 239.99656 * 2 1 3 31 31 H 1.09004 * 109.47603 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47685 * 300.00080 * 3 2 1 33 33 H 1.08999 * 109.47551 * 60.00301 * 3 2 1 34 34 H 1.09007 * 109.47097 * 185.00059 * 4 2 1 35 35 H 1.09005 * 109.47007 * 304.99172 * 4 2 1 36 36 H 1.08000 * 120.00031 * 359.97438 * 6 5 4 37 37 H 1.07998 * 120.00305 * 180.27946 * 7 6 5 38 38 H 1.08998 * 109.46851 * 59.99818 * 11 9 8 39 39 H 1.08995 * 109.46954 * 180.02562 * 11 9 8 40 40 H 1.08994 * 109.46906 * 299.99904 * 11 9 8 41 41 H 1.09003 * 109.46817 * 173.86276 * 14 12 9 42 42 H 1.09000 * 109.47434 * 293.85814 * 14 12 9 43 43 H 1.08991 * 109.47163 * 53.86044 * 14 12 9 44 44 H 1.00900 * 111.00304 * 31.04853 * 15 12 9 45 45 H 1.08995 * 109.47221 * 300.00107 * 16 15 12 46 46 H 1.09004 * 109.46739 * 60.00574 * 16 15 12 47 47 H 0.97001 * 120.00212 * 179.97438 * 20 19 17 48 48 H 1.08006 * 119.99534 * 180.02562 * 25 8 7 49 49 H 1.07994 * 120.00427 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6412 -2.1734 1.1888 6 6 0.4381 -2.5829 1.7323 7 6 0.0703 -3.9141 1.6731 8 6 0.9099 -4.8373 1.0783 9 6 0.5107 -6.2891 1.0170 10 1 1.3121 -6.8672 0.5570 11 6 -0.7646 -6.4327 0.1839 12 6 0.2557 -6.8082 2.4335 13 1 -0.5296 -6.2149 2.9020 14 6 -0.1816 -8.2730 2.3688 15 7 1.4889 -6.6998 3.2242 16 6 1.1879 -6.6076 4.6591 17 6 2.4744 -6.4986 5.4363 18 1 3.4210 -6.4983 4.9163 19 6 2.4431 -6.4004 6.8111 20 7 3.5657 -6.3047 7.4893 21 14 0.8058 -6.4016 7.7105 22 1 0.4286 -7.7973 8.0499 23 1 0.9253 -5.6040 8.9574 24 1 -0.2381 -5.8047 6.8392 25 6 2.1155 -4.4286 0.5395 26 6 2.4813 -3.0967 0.5948 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1264 -0.6445 1.2951 35 1 1.6055 -0.2618 2.1370 36 1 -0.2160 -1.8623 2.2007 37 1 -0.8718 -4.2333 2.0937 38 1 -0.5828 -6.0629 -0.8252 39 1 -1.0535 -7.4827 0.1400 40 1 -1.5660 -5.8547 0.6438 41 1 -0.2579 -8.6743 3.3794 42 1 -1.1518 -8.3412 1.8767 43 1 0.5532 -8.8469 1.8045 44 1 2.0454 -5.9149 2.9204 45 1 0.5744 -5.7262 4.8458 46 1 0.6475 -7.5000 4.9750 47 1 3.5437 -6.2352 8.4566 48 1 2.7713 -5.1498 0.0745 49 1 3.4230 -2.7773 0.1734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308722872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:04 Heat of formation + Delta-G solvation = -11.345781 kcal Electronic energy + Delta-G solvation = -23430.125437 eV Core-core repulsion = 20355.455154 eV Total energy + Delta-G solvation = -3074.670283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83332 -37.58585 -35.85918 -33.59932 -32.05574 -30.81736 -30.68052 -28.62466 -27.31778 -26.97002 -25.93021 -23.60089 -22.69314 -21.42962 -20.67467 -20.10582 -19.28482 -16.80602 -16.31617 -15.72510 -15.29709 -14.89068 -14.53268 -14.45541 -14.37402 -13.86732 -13.71783 -13.25217 -13.21849 -12.92995 -12.61924 -12.45675 -12.36560 -12.18192 -12.08635 -11.87441 -11.81383 -11.64237 -11.44302 -11.29225 -11.01918 -10.92118 -10.90294 -10.77243 -10.64573 -10.37026 -10.36046 -9.99309 -9.73943 -9.21606 -8.69030 -8.54505 -8.26522 -7.37682 -6.01576 -3.98495 1.52521 1.61960 3.30820 3.37639 3.40699 3.91439 4.45538 4.66063 4.71835 4.82171 4.82964 4.89347 5.09210 5.19367 5.21982 5.25231 5.32045 5.40778 5.47226 5.51583 5.56139 5.57257 5.66369 5.67864 5.73921 5.76023 5.79852 5.86939 5.89573 5.93372 5.99595 6.10955 6.13530 6.17489 6.19096 6.27245 6.28353 6.34748 6.49750 6.61750 6.72651 6.79089 6.83908 6.90651 7.10585 7.21357 7.68478 7.99182 8.44826 8.71878 9.07135 9.61072 11.11965 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.004476 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.936770 B = 6254.264519 C = 7573.557298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.085 4.085 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.076 4.076 9 C -0.055 4.055 10 H 0.083 0.917 11 C -0.140 4.140 12 C 0.088 3.912 13 H 0.034 0.966 14 C -0.138 4.138 15 N -0.675 5.675 16 C 0.166 3.834 17 C -0.512 4.512 18 H 0.078 0.922 19 C 0.068 3.932 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.268 1.268 25 C -0.110 4.110 26 C -0.115 4.115 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.337 0.663 45 H -0.019 1.019 46 H 0.020 0.980 47 H 0.263 0.737 48 H 0.120 0.880 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.935 9.960 -17.790 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.114 4.114 5 C -0.085 4.085 6 C -0.131 4.131 7 C -0.129 4.129 8 C -0.076 4.076 9 C -0.073 4.073 10 H 0.102 0.898 11 C -0.198 4.198 12 C -0.023 4.023 13 H 0.052 0.948 14 C -0.196 4.196 15 N -0.307 5.307 16 C 0.038 3.962 17 C -0.550 4.550 18 H 0.096 0.904 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.193 1.193 25 C -0.128 4.128 26 C -0.133 4.133 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.156 0.844 45 H -0.001 1.001 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.138 0.862 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.756 9.301 -17.574 21.342 hybrid contribution -1.096 0.877 0.868 1.650 sum -8.851 10.177 -16.706 21.471 Atomic orbital electron populations 1.21917 0.95288 1.02266 1.01276 1.21068 0.96048 0.95662 0.98060 1.21855 1.00969 0.96023 1.01655 1.20668 1.01129 0.91417 0.98140 1.19750 0.94768 0.95270 0.98708 1.20941 0.96441 0.95715 0.99979 1.20945 0.99706 0.92937 0.99276 1.19846 0.94516 0.95300 0.97907 1.20388 0.98580 0.91703 0.96679 0.89828 1.21847 0.96825 1.01881 0.99237 1.21529 0.93159 0.95867 0.91725 0.94829 1.21827 0.99519 0.96271 1.01986 1.60554 1.16306 1.48998 1.04825 1.19996 0.97112 0.94314 0.84749 1.21071 0.92977 1.49662 0.91283 0.90411 1.24889 0.96102 0.94852 0.97446 1.69901 1.26044 1.50961 1.07195 0.86852 0.85007 0.78428 0.79421 1.20171 1.21253 1.19302 1.21037 0.96041 0.95759 0.99946 1.20948 0.99216 0.93039 1.00113 0.93134 0.92012 0.92833 0.91228 0.92680 0.92824 0.92679 0.91050 0.91114 0.86597 0.86608 0.92851 0.91952 0.92793 0.92496 0.93368 0.92404 0.84445 1.00092 0.96169 0.92745 0.86153 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.78 37.16 0.33 -1.02 16 2 C -0.09 -0.81 2.91 -90.63 -0.26 -1.08 16 3 C -0.15 -1.15 9.19 37.15 0.34 -0.81 16 4 C -0.08 -0.81 4.84 -27.88 -0.13 -0.94 16 5 C -0.08 -1.09 4.70 -104.63 -0.49 -1.58 16 6 C -0.11 -1.52 7.98 -39.58 -0.32 -1.84 16 7 C -0.11 -1.60 8.71 -39.58 -0.34 -1.94 16 8 C -0.08 -1.09 3.50 -104.62 -0.37 -1.45 16 9 C -0.05 -0.76 2.29 -91.77 -0.21 -0.97 16 10 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 11 C -0.14 -1.60 8.65 37.16 0.32 -1.28 16 12 C 0.09 1.49 2.04 -67.72 -0.14 1.35 16 13 H 0.03 0.60 6.86 -51.93 -0.36 0.25 16 14 C -0.14 -2.15 8.87 37.16 0.33 -1.82 16 15 N -0.68 -14.44 6.30 -107.99 -0.68 -15.12 16 16 C 0.17 4.18 4.31 -4.97 -0.02 4.16 16 17 C -0.51 -15.09 9.87 -34.44 -0.34 -15.43 16 18 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 21 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 25 C -0.11 -1.51 9.60 -39.59 -0.38 -1.89 16 26 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.62 6.28 -51.93 -0.33 0.29 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.12 1.39 8.05 -52.49 -0.42 0.97 16 37 H 0.12 1.61 7.09 -52.49 -0.37 1.24 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 40 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 41 H 0.06 0.98 7.34 -51.93 -0.38 0.60 16 42 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.34 7.27 7.13 -39.29 -0.28 6.99 16 45 H -0.02 -0.48 7.11 -51.93 -0.37 -0.85 16 46 H 0.02 0.52 6.78 -51.93 -0.35 0.16 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.12 1.50 7.95 -52.48 -0.42 1.08 16 49 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -31.25 378.92 -10.04 -41.29 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -9.00 Total: 4.63 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -2.17 Total: -26.48 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.09 Total: -42.64 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.25 -10.04 -41.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.946 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds