Wall clock time and date at job start Tue Mar 31 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47452 * 2 1 4 4 C 1.53000 * 109.47145 * 120.00645 * 2 1 3 5 5 C 1.50696 * 109.47339 * 64.99398 * 4 2 1 6 6 C 1.38230 * 120.00121 * 269.72644 * 5 4 2 7 7 C 1.38236 * 120.00229 * 179.78931 * 6 5 4 8 8 C 1.38237 * 119.99539 * 0.44393 * 7 6 5 9 9 C 1.50701 * 119.99816 * 179.83425 * 8 7 6 10 10 H 1.09000 * 109.47276 * 182.57385 * 9 8 7 11 11 C 1.53008 * 109.47207 * 62.58035 * 9 8 7 12 12 C 1.52995 * 109.47160 * 302.57807 * 9 8 7 13 13 H 1.08999 * 109.47241 * 58.67662 * 12 9 8 14 14 C 1.53005 * 109.46952 * 178.67519 * 12 9 8 15 15 N 1.46892 * 109.47276 * 298.67516 * 12 9 8 16 16 C 1.46906 * 111.00163 * 154.99857 * 15 12 9 17 17 C 1.50700 * 109.47307 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99682 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00237 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46851 * 90.00452 * 21 19 17 23 23 H 1.48498 * 109.47397 * 210.00118 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00701 * 21 19 17 25 25 C 1.38231 * 119.99988 * 359.81046 * 8 7 6 26 26 C 1.38232 * 120.00568 * 359.97438 * 25 8 7 27 27 H 1.09000 * 109.47242 * 59.99304 * 1 2 3 28 28 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46991 * 299.99788 * 1 2 3 30 30 H 1.09003 * 109.46977 * 239.99656 * 2 1 3 31 31 H 1.09004 * 109.47603 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47685 * 300.00080 * 3 2 1 33 33 H 1.08999 * 109.47551 * 60.00301 * 3 2 1 34 34 H 1.09007 * 109.47097 * 185.00059 * 4 2 1 35 35 H 1.09005 * 109.47007 * 304.99172 * 4 2 1 36 36 H 1.08000 * 120.00031 * 359.97438 * 6 5 4 37 37 H 1.07998 * 120.00305 * 180.27946 * 7 6 5 38 38 H 1.08998 * 109.46851 * 59.99818 * 11 9 8 39 39 H 1.08995 * 109.46954 * 180.02562 * 11 9 8 40 40 H 1.08994 * 109.46906 * 299.99904 * 11 9 8 41 41 H 1.09003 * 109.46817 * 173.86276 * 14 12 9 42 42 H 1.09000 * 109.47434 * 293.85814 * 14 12 9 43 43 H 1.08991 * 109.47163 * 53.86044 * 14 12 9 44 44 H 1.00900 * 111.00304 * 31.04853 * 15 12 9 45 45 H 1.08995 * 109.47221 * 300.00107 * 16 15 12 46 46 H 1.09004 * 109.46739 * 60.00574 * 16 15 12 47 47 H 0.97001 * 120.00212 * 179.97438 * 20 19 17 48 48 H 1.08006 * 119.99534 * 180.02562 * 25 8 7 49 49 H 1.07994 * 120.00427 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6412 -2.1734 1.1888 6 6 0.4381 -2.5829 1.7323 7 6 0.0703 -3.9141 1.6731 8 6 0.9099 -4.8373 1.0783 9 6 0.5107 -6.2891 1.0170 10 1 1.3121 -6.8672 0.5570 11 6 -0.7646 -6.4327 0.1839 12 6 0.2557 -6.8082 2.4335 13 1 -0.5296 -6.2149 2.9020 14 6 -0.1816 -8.2730 2.3688 15 7 1.4889 -6.6998 3.2242 16 6 1.1879 -6.6076 4.6591 17 6 2.4744 -6.4986 5.4363 18 1 3.4210 -6.4983 4.9163 19 6 2.4431 -6.4004 6.8111 20 7 3.5657 -6.3047 7.4893 21 14 0.8058 -6.4016 7.7105 22 1 0.4286 -7.7973 8.0499 23 1 0.9253 -5.6040 8.9574 24 1 -0.2381 -5.8047 6.8392 25 6 2.1155 -4.4286 0.5395 26 6 2.4813 -3.0967 0.5948 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1264 -0.6445 1.2951 35 1 1.6055 -0.2618 2.1370 36 1 -0.2160 -1.8623 2.2007 37 1 -0.8718 -4.2333 2.0937 38 1 -0.5828 -6.0629 -0.8252 39 1 -1.0535 -7.4827 0.1400 40 1 -1.5660 -5.8547 0.6438 41 1 -0.2579 -8.6743 3.3794 42 1 -1.1518 -8.3412 1.8767 43 1 0.5532 -8.8469 1.8045 44 1 2.0454 -5.9149 2.9204 45 1 0.5744 -5.7262 4.8458 46 1 0.6475 -7.5000 4.9750 47 1 3.5437 -6.2352 8.4566 48 1 2.7713 -5.1498 0.0745 49 1 3.4230 -2.7773 0.1734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308722872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:03 Heat of formation + Delta-G solvation = -28.001612 kcal Electronic energy + Delta-G solvation = -23430.847688 eV Core-core repulsion = 20355.455154 eV Total energy + Delta-G solvation = -3075.392534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89553 -38.75143 -36.89676 -35.33910 -33.89007 -31.93589 -31.78881 -29.95888 -28.58020 -27.99009 -27.04876 -24.89992 -23.77144 -23.02156 -22.07562 -20.94498 -20.48995 -18.93359 -17.38924 -16.99040 -16.63366 -16.23960 -15.93399 -15.55439 -15.42627 -15.15692 -14.85784 -14.61306 -14.43154 -14.23731 -13.84466 -13.80607 -13.47975 -13.46363 -13.04580 -13.00838 -12.96238 -12.82128 -12.65095 -12.48181 -12.40641 -12.15751 -11.98456 -11.81483 -11.77172 -11.67674 -11.53641 -11.49110 -11.30983 -11.19571 -10.81962 -9.75111 -9.30929 -9.10698 -8.31757 -6.35585 0.47805 0.55778 1.31147 1.32765 1.43912 2.31567 2.86826 3.02144 3.46966 3.73418 3.85511 3.90990 3.98296 4.08519 4.16537 4.19105 4.39405 4.41513 4.45386 4.53510 4.60727 4.65381 4.71910 4.77966 4.78546 4.82661 4.86031 4.90706 4.97393 5.01564 5.03339 5.06791 5.07887 5.10849 5.17745 5.19679 5.24835 5.33982 5.37235 5.41925 5.44955 5.48575 5.55949 5.62344 5.78128 5.79571 6.00163 6.18173 6.58108 6.67143 6.78083 7.29295 8.85237 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.004476 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.936770 B = 6254.264519 C = 7573.557298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.075 4.075 5 C -0.088 4.088 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.089 4.089 9 C -0.046 4.046 10 H 0.082 0.918 11 C -0.134 4.134 12 C 0.086 3.914 13 H 0.028 0.972 14 C -0.135 4.135 15 N -0.682 5.682 16 C 0.181 3.819 17 C -0.526 4.526 18 H 0.034 0.966 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.948 3.052 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.255 1.255 25 C -0.122 4.122 26 C -0.124 4.124 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.333 0.667 45 H -0.023 1.023 46 H 0.022 0.978 47 H 0.268 0.732 48 H 0.129 0.871 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 10.461 -18.719 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.113 4.113 5 C -0.088 4.088 6 C -0.140 4.140 7 C -0.143 4.143 8 C -0.089 4.089 9 C -0.065 4.065 10 H 0.101 0.899 11 C -0.191 4.191 12 C -0.024 4.024 13 H 0.046 0.954 14 C -0.193 4.193 15 N -0.314 5.314 16 C 0.052 3.948 17 C -0.564 4.564 18 H 0.053 0.947 19 C -0.187 4.187 20 N -0.587 5.587 21 Si 0.771 3.229 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.179 1.179 25 C -0.140 4.140 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.151 0.849 45 H -0.005 1.005 46 H 0.040 0.960 47 H 0.077 0.923 48 H 0.147 0.853 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.730 9.796 -18.531 23.109 hybrid contribution -0.379 0.742 1.098 1.378 sum -10.109 10.538 -17.433 22.741 Atomic orbital electron populations 1.21900 0.95175 1.01624 1.01902 1.21025 0.96094 0.96267 0.96989 1.21833 1.01174 0.95055 1.02191 1.20709 1.01363 0.90194 0.98988 1.20030 0.94424 0.96432 0.97927 1.21151 0.96994 0.95739 1.00126 1.21080 0.99984 0.93481 0.99783 1.19959 0.94877 0.95578 0.98475 1.20312 0.99987 0.91273 0.94951 0.89935 1.21808 0.95287 1.02847 0.99202 1.21673 0.90895 0.97067 0.92769 0.95374 1.21824 1.01401 0.94853 1.01218 1.60496 1.18707 1.48809 1.03338 1.19700 0.94555 0.93930 0.86627 1.21327 0.93201 1.49857 0.92027 0.94727 1.25842 1.00403 0.94145 0.98348 1.70050 1.28801 1.52032 1.07821 0.85703 0.79842 0.79211 0.78119 1.18820 1.20384 1.17857 1.21252 0.96125 0.96440 1.00220 1.21223 0.99961 0.92941 1.00090 0.92144 0.93247 0.92590 0.91501 0.92383 0.91896 0.92542 0.90745 0.91156 0.85536 0.86511 0.91751 0.90650 0.92600 0.94501 0.90069 0.92119 0.84916 1.00499 0.95969 0.92346 0.85331 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.78 71.98 0.63 -1.83 16 2 C -0.09 -1.43 2.91 -10.80 -0.03 -1.46 16 3 C -0.15 -2.01 9.19 71.98 0.66 -1.34 16 4 C -0.08 -1.52 4.84 29.85 0.14 -1.38 16 5 C -0.09 -2.21 4.70 -19.87 -0.09 -2.30 16 6 C -0.12 -3.24 7.98 22.27 0.18 -3.06 16 7 C -0.13 -3.55 8.71 22.27 0.19 -3.36 16 8 C -0.09 -2.51 3.50 -19.87 -0.07 -2.58 16 9 C -0.05 -1.24 2.29 -11.54 -0.03 -1.26 16 10 H 0.08 2.21 7.88 -2.39 -0.02 2.19 16 11 C -0.13 -2.73 8.65 71.98 0.62 -2.10 16 12 C 0.09 2.82 2.04 44.92 0.09 2.91 16 13 H 0.03 0.97 6.86 -2.39 -0.02 0.96 16 14 C -0.14 -3.96 8.87 71.98 0.64 -3.32 16 15 N -0.68 -29.32 6.30 -495.58 -3.12 -32.45 16 16 C 0.18 9.10 4.31 85.56 0.37 9.47 16 17 C -0.53 -31.82 9.87 25.60 0.25 -31.57 16 18 H 0.03 2.32 8.06 -2.91 -0.02 2.30 16 19 C 0.01 0.61 5.47 84.65 0.46 1.07 16 20 N -0.95 -60.59 13.96 21.44 0.30 -60.29 16 21 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 22 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 25 C -0.12 -3.33 9.60 22.27 0.21 -3.12 16 26 C -0.12 -3.18 9.70 22.27 0.22 -2.96 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.94 6.28 -2.39 -0.02 0.92 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.45 8.09 -2.38 -0.02 1.43 16 35 H 0.07 1.42 8.08 -2.38 -0.02 1.40 16 36 H 0.13 2.96 8.05 -2.91 -0.02 2.94 16 37 H 0.12 3.19 7.09 -2.91 -0.02 3.17 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.33 6.54 -2.39 -0.02 1.32 16 40 H 0.05 1.12 7.54 -2.39 -0.02 1.10 16 41 H 0.04 1.21 7.34 -2.39 -0.02 1.19 16 42 H 0.08 1.83 6.75 -2.39 -0.02 1.81 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.33 14.65 7.13 -89.69 -0.64 14.01 16 45 H -0.02 -1.15 7.11 -2.39 -0.02 -1.16 16 46 H 0.02 1.12 6.78 -2.38 -0.02 1.10 16 47 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 48 H 0.13 3.17 7.95 -2.91 -0.02 3.14 16 49 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -68.00 378.92 3.71 -64.29 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.20 Total: 29.24 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 4.46 Total: -48.18 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -2.82 Total: -92.74 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -68.00 3.71 -64.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.286 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds