Wall clock time and date at job start Tue Mar 31 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47169 * 120.00245 * 2 1 3 5 5 C 1.50695 * 109.47086 * 175.00119 * 4 2 1 6 6 C 1.38232 * 120.00136 * 90.00186 * 5 4 2 7 7 C 1.38234 * 119.99903 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00175 * 359.95218 * 7 6 5 9 9 C 1.50705 * 120.00152 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46675 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.46840 * 120.00061 * 9 8 7 12 12 C 1.52995 * 109.47134 * 240.00251 * 9 8 7 13 13 H 1.09004 * 109.47127 * 300.00068 * 12 9 8 14 14 C 1.53000 * 109.47240 * 59.99833 * 12 9 8 15 15 N 1.46905 * 109.47133 * 179.97438 * 12 9 8 16 16 C 1.46902 * 110.99800 * 154.99741 * 15 12 9 17 17 C 1.50706 * 109.46577 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72326 * 17 16 15 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.38242 * 120.00163 * 0.27753 * 8 7 6 26 26 C 1.38236 * 119.99396 * 359.51274 * 25 8 7 27 27 H 1.08996 * 109.47313 * 299.99842 * 1 2 3 28 28 H 1.09007 * 109.46875 * 60.00066 * 1 2 3 29 29 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47111 * 240.00185 * 2 1 3 31 31 H 1.08994 * 109.47208 * 300.00040 * 3 2 1 32 32 H 1.09005 * 109.46974 * 60.00101 * 3 2 1 33 33 H 1.09006 * 109.46850 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46803 * 54.99866 * 4 2 1 35 35 H 1.09003 * 109.46566 * 295.00210 * 4 2 1 36 36 H 1.07992 * 120.00079 * 359.97213 * 6 5 4 37 37 H 1.08006 * 120.00075 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47300 * 180.02562 * 11 9 8 39 39 H 1.09003 * 109.47674 * 299.99833 * 11 9 8 40 40 H 1.09000 * 109.47298 * 60.00612 * 11 9 8 41 41 H 1.09001 * 109.47129 * 300.00009 * 14 12 9 42 42 H 1.08996 * 109.47051 * 60.00373 * 14 12 9 43 43 H 1.09002 * 109.46808 * 179.97438 * 14 12 9 44 44 H 1.00891 * 110.99988 * 278.95156 * 15 12 9 45 45 H 1.09000 * 109.47263 * 60.00269 * 16 15 12 46 46 H 1.09001 * 109.47582 * 299.99548 * 16 15 12 47 47 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 48 48 H 1.07991 * 120.00277 * 179.72780 * 25 8 7 49 49 H 1.07996 * 119.99643 * 180.24889 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3291 0.1711 1.7274 7 6 5.7067 0.0717 1.6725 8 6 6.2972 -1.0288 1.0799 9 6 7.7991 -1.1375 1.0205 10 1 8.2456 -0.2620 1.4920 11 6 8.2487 -2.3993 1.7599 12 6 8.2475 -1.2152 -0.4402 13 1 7.8009 -2.0908 -0.9113 14 6 7.7979 0.0466 -1.1795 15 7 9.7116 -1.3205 -0.4981 16 6 10.1438 -1.9716 -1.7420 17 6 11.6479 -2.0622 -1.7651 18 1 12.2252 -1.6708 -0.9406 19 6 12.2872 -2.6391 -2.8419 20 7 11.5845 -3.1099 -3.8490 21 14 14.1516 -2.7520 -2.8703 22 1 14.5797 -4.0307 -2.2481 23 1 14.6292 -2.7011 -4.2755 24 1 14.7281 -1.6141 -2.1100 25 6 5.5100 -2.0271 0.5371 26 6 4.1323 -1.9297 0.5959 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6053 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1369 36 1 3.8678 1.0305 2.1910 37 1 6.3218 0.8536 2.0929 38 1 9.3350 -2.4777 1.7174 39 1 7.9293 -2.3440 2.8006 40 1 7.8022 -3.2750 1.2888 41 1 6.7115 0.1253 -1.1366 42 1 8.2444 0.9223 -0.7085 43 1 8.1177 -0.0086 -2.2201 44 1 10.1437 -0.4146 -0.3951 45 1 9.8014 -1.3871 -2.5960 46 1 9.7190 -2.9741 -1.7940 47 1 12.0343 -3.5154 -4.6066 48 1 5.9713 -2.8847 0.0702 49 1 3.5173 -2.7116 0.1754 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308722873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:07 Heat of formation + Delta-G solvation = -16.612944 kcal Electronic energy + Delta-G solvation = -22942.641940 eV Core-core repulsion = 19867.743256 eV Total energy + Delta-G solvation = -3074.898684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85113 -37.50325 -35.95429 -33.54931 -32.14175 -30.89345 -30.01637 -29.03680 -27.38244 -26.43269 -25.71486 -23.27468 -22.72195 -21.94880 -21.00028 -20.11873 -19.41151 -16.47025 -16.31735 -15.43008 -15.30678 -14.69035 -14.64552 -14.51116 -14.05455 -13.88697 -13.82710 -13.31415 -13.27350 -12.96503 -12.61186 -12.44166 -12.35487 -12.13136 -12.09029 -11.84498 -11.70247 -11.33875 -11.24145 -11.04622 -11.03306 -10.95094 -10.82195 -10.80427 -10.67098 -10.54305 -10.36612 -10.13019 -9.76096 -9.15536 -8.79487 -8.47596 -8.32412 -7.20839 -6.01547 -4.03198 1.45611 1.51610 3.32969 3.38697 3.42377 3.83839 4.44098 4.58904 4.62974 4.75425 4.87619 4.95341 5.09458 5.14501 5.20467 5.34361 5.35821 5.40966 5.44925 5.46481 5.59191 5.59855 5.64776 5.67519 5.68122 5.77672 5.81998 5.87258 5.89552 6.03002 6.08540 6.10271 6.14914 6.19878 6.27948 6.34392 6.43818 6.53103 6.58791 6.61608 6.68504 6.83524 6.95127 7.13860 7.30684 7.48289 7.81209 8.16045 8.43700 8.65745 9.06594 9.61635 11.09507 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.002791 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.375515 B =10028.753806 C =10348.752883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.093 4.093 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.061 4.061 9 C -0.042 4.042 10 H 0.071 0.929 11 C -0.131 4.131 12 C 0.092 3.908 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.683 5.683 16 C 0.196 3.804 17 C -0.512 4.512 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.111 4.111 26 C -0.116 4.116 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.328 0.672 45 H -0.014 1.014 46 H 0.026 0.974 47 H 0.261 0.739 48 H 0.121 0.879 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 6.695 10.527 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.110 4.110 5 C -0.093 4.093 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.062 4.062 9 C -0.061 4.061 10 H 0.090 0.910 11 C -0.188 4.188 12 C -0.019 4.019 13 H 0.089 0.911 14 C -0.236 4.236 15 N -0.312 5.312 16 C 0.069 3.931 17 C -0.551 4.551 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.129 4.129 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.145 0.855 45 H 0.004 0.996 46 H 0.044 0.956 47 H 0.070 0.930 48 H 0.139 0.861 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.358 6.010 10.708 23.775 hybrid contribution 0.810 0.607 -0.907 1.359 sum -19.548 6.617 9.800 22.846 Atomic orbital electron populations 1.21854 0.95288 1.01625 1.01686 1.21089 0.95207 0.96622 0.98141 1.21916 1.01915 0.95630 1.01288 1.20637 0.91421 1.00882 0.98108 1.19741 0.95182 0.94963 0.99458 1.20928 0.93526 0.98375 1.00558 1.21041 0.94536 0.97828 1.00331 1.19992 0.95965 0.93843 0.96384 1.20184 0.89296 0.99598 0.97050 0.91048 1.21677 1.03205 0.96100 0.97813 1.21502 0.90894 0.96674 0.92804 0.91148 1.22489 1.00951 0.98999 1.01209 1.60703 1.03248 1.26016 1.41215 1.19547 0.95509 0.93802 0.84206 1.21200 0.91514 1.38486 1.03912 0.92020 1.24990 0.98543 0.95612 0.95480 1.69963 1.35405 1.40245 1.08189 0.86502 0.85402 0.78488 0.77010 1.20638 1.21360 1.19885 1.21046 0.93287 0.99060 0.99526 1.20977 0.94747 0.97765 0.99945 0.92774 0.92715 0.92753 0.91072 0.92998 0.92950 0.91912 0.91300 0.91348 0.86685 0.86464 0.90349 0.94169 0.93296 0.93019 0.93161 0.92626 0.85542 0.99608 0.95602 0.92964 0.86061 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.09 -0.76 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -1.25 8.76 37.16 0.33 -0.93 16 4 C -0.07 -0.62 4.84 -27.88 -0.13 -0.76 16 5 C -0.09 -1.01 4.71 -104.63 -0.49 -1.50 16 6 C -0.12 -1.27 7.96 -39.58 -0.32 -1.58 16 7 C -0.12 -1.45 9.67 -39.59 -0.38 -1.83 16 8 C -0.06 -0.83 3.52 -104.62 -0.37 -1.19 16 9 C -0.04 -0.62 2.34 -91.77 -0.21 -0.84 16 10 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 11 C -0.13 -1.97 8.85 37.16 0.33 -1.65 16 12 C 0.09 1.62 1.99 -67.71 -0.13 1.48 16 13 H 0.07 1.34 7.03 -51.93 -0.37 0.97 16 14 C -0.18 -2.91 8.91 37.16 0.33 -2.58 16 15 N -0.68 -14.30 5.47 -107.98 -0.59 -14.90 16 16 C 0.20 5.10 5.24 -4.97 -0.03 5.08 16 17 C -0.51 -14.50 9.32 -34.44 -0.32 -14.82 16 18 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.11 -1.48 8.71 -39.58 -0.34 -1.82 16 26 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.60 6.26 -51.93 -0.33 0.28 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.05 8.04 -52.49 -0.42 0.63 16 37 H 0.12 1.28 7.95 -52.48 -0.42 0.86 16 38 H 0.08 1.33 7.61 -51.93 -0.39 0.93 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16 41 H 0.05 0.79 7.22 -51.93 -0.37 0.41 16 42 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 43 H 0.05 1.01 7.45 -51.93 -0.39 0.62 16 44 H 0.33 6.67 8.46 -39.30 -0.33 6.34 16 45 H -0.01 -0.39 7.43 -51.93 -0.39 -0.77 16 46 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.12 1.64 7.10 -52.49 -0.37 1.26 16 49 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -29.38 385.08 -10.40 -39.78 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -9.18 Total: 3.67 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.15 Total: -24.89 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.15 Total: -41.15 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.38 -10.40 -39.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.170 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds