Wall clock time and date at job start Tue Mar 31 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47169 * 120.00245 * 2 1 3 5 5 C 1.50695 * 109.47086 * 175.00119 * 4 2 1 6 6 C 1.38232 * 120.00136 * 90.00186 * 5 4 2 7 7 C 1.38234 * 119.99903 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00175 * 359.95218 * 7 6 5 9 9 C 1.50705 * 120.00152 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46675 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.46840 * 120.00061 * 9 8 7 12 12 C 1.52995 * 109.47134 * 240.00251 * 9 8 7 13 13 H 1.09004 * 109.47127 * 300.00068 * 12 9 8 14 14 C 1.53000 * 109.47240 * 59.99833 * 12 9 8 15 15 N 1.46905 * 109.47133 * 179.97438 * 12 9 8 16 16 C 1.46902 * 110.99800 * 154.99741 * 15 12 9 17 17 C 1.50706 * 109.46577 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72326 * 17 16 15 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.38242 * 120.00163 * 0.27753 * 8 7 6 26 26 C 1.38236 * 119.99396 * 359.51274 * 25 8 7 27 27 H 1.08996 * 109.47313 * 299.99842 * 1 2 3 28 28 H 1.09007 * 109.46875 * 60.00066 * 1 2 3 29 29 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47111 * 240.00185 * 2 1 3 31 31 H 1.08994 * 109.47208 * 300.00040 * 3 2 1 32 32 H 1.09005 * 109.46974 * 60.00101 * 3 2 1 33 33 H 1.09006 * 109.46850 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46803 * 54.99866 * 4 2 1 35 35 H 1.09003 * 109.46566 * 295.00210 * 4 2 1 36 36 H 1.07992 * 120.00079 * 359.97213 * 6 5 4 37 37 H 1.08006 * 120.00075 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47300 * 180.02562 * 11 9 8 39 39 H 1.09003 * 109.47674 * 299.99833 * 11 9 8 40 40 H 1.09000 * 109.47298 * 60.00612 * 11 9 8 41 41 H 1.09001 * 109.47129 * 300.00009 * 14 12 9 42 42 H 1.08996 * 109.47051 * 60.00373 * 14 12 9 43 43 H 1.09002 * 109.46808 * 179.97438 * 14 12 9 44 44 H 1.00891 * 110.99988 * 278.95156 * 15 12 9 45 45 H 1.09000 * 109.47263 * 60.00269 * 16 15 12 46 46 H 1.09001 * 109.47582 * 299.99548 * 16 15 12 47 47 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 48 48 H 1.07991 * 120.00277 * 179.72780 * 25 8 7 49 49 H 1.07996 * 119.99643 * 180.24889 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3291 0.1711 1.7274 7 6 5.7067 0.0717 1.6725 8 6 6.2972 -1.0288 1.0799 9 6 7.7991 -1.1375 1.0205 10 1 8.2456 -0.2620 1.4920 11 6 8.2487 -2.3993 1.7599 12 6 8.2475 -1.2152 -0.4402 13 1 7.8009 -2.0908 -0.9113 14 6 7.7979 0.0466 -1.1795 15 7 9.7116 -1.3205 -0.4981 16 6 10.1438 -1.9716 -1.7420 17 6 11.6479 -2.0622 -1.7651 18 1 12.2252 -1.6708 -0.9406 19 6 12.2872 -2.6391 -2.8419 20 7 11.5845 -3.1099 -3.8490 21 14 14.1516 -2.7520 -2.8703 22 1 14.5797 -4.0307 -2.2481 23 1 14.6292 -2.7011 -4.2755 24 1 14.7281 -1.6141 -2.1100 25 6 5.5100 -2.0271 0.5371 26 6 4.1323 -1.9297 0.5959 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6053 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1369 36 1 3.8678 1.0305 2.1910 37 1 6.3218 0.8536 2.0929 38 1 9.3350 -2.4777 1.7174 39 1 7.9293 -2.3440 2.8006 40 1 7.8022 -3.2750 1.2888 41 1 6.7115 0.1253 -1.1366 42 1 8.2444 0.9223 -0.7085 43 1 8.1177 -0.0086 -2.2201 44 1 10.1437 -0.4146 -0.3951 45 1 9.8014 -1.3871 -2.5960 46 1 9.7190 -2.9741 -1.7940 47 1 12.0343 -3.5154 -4.6066 48 1 5.9713 -2.8847 0.0702 49 1 3.5173 -2.7116 0.1754 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308722873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:07 Heat of formation + Delta-G solvation = -30.542107 kcal Electronic energy + Delta-G solvation = -22943.245954 eV Core-core repulsion = 19867.743256 eV Total energy + Delta-G solvation = -3075.502698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83147 -38.70687 -36.98409 -35.27636 -33.82424 -31.81858 -31.17136 -30.51419 -28.03561 -27.94826 -26.99092 -24.67946 -23.70384 -23.60041 -22.32017 -20.84374 -20.62744 -18.49371 -17.43743 -16.70607 -16.35839 -16.12783 -15.76542 -15.64260 -15.35329 -15.12235 -14.97657 -14.39592 -14.29560 -14.20510 -14.03700 -13.76117 -13.50559 -13.31236 -13.07786 -13.01352 -12.84569 -12.71332 -12.68072 -12.49913 -12.42614 -12.08722 -12.02858 -11.93075 -11.79871 -11.65331 -11.50872 -11.42611 -11.41932 -11.05410 -10.66179 -9.72393 -9.34093 -8.97426 -8.21957 -6.32926 0.51130 0.58450 1.40719 1.42654 1.53738 2.39950 2.89516 3.11306 3.53301 3.79399 3.88037 3.98192 4.12442 4.14039 4.18878 4.22983 4.28004 4.39483 4.42532 4.54536 4.63808 4.66349 4.74400 4.80588 4.84432 4.86673 4.89664 4.92825 5.00171 5.06812 5.08888 5.10576 5.14073 5.19725 5.23234 5.24615 5.32990 5.36933 5.39636 5.46431 5.48870 5.52600 5.62853 5.67307 5.81284 5.88192 6.04317 6.21225 6.48602 6.76008 6.92907 7.38110 8.89629 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.002791 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.375515 B =10028.753806 C =10348.752883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.070 4.070 5 C -0.089 4.089 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.076 4.076 9 C -0.030 4.030 10 H 0.082 0.918 11 C -0.127 4.127 12 C 0.093 3.907 13 H 0.048 0.952 14 C -0.166 4.166 15 N -0.677 5.677 16 C 0.214 3.786 17 C -0.532 4.532 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.973 3.027 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.262 1.262 25 C -0.127 4.127 26 C -0.124 4.124 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.030 0.970 44 H 0.334 0.666 45 H -0.041 1.041 46 H -0.006 1.006 47 H 0.264 0.736 48 H 0.107 0.893 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.216 8.079 12.149 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.140 4.140 8 C -0.076 4.076 9 C -0.049 4.049 10 H 0.100 0.900 11 C -0.184 4.184 12 C -0.017 4.017 13 H 0.066 0.934 14 C -0.225 4.225 15 N -0.307 5.307 16 C 0.086 3.914 17 C -0.571 4.571 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.797 3.203 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.145 4.145 26 C -0.142 4.142 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.152 0.848 45 H -0.023 1.023 46 H 0.012 0.988 47 H 0.073 0.927 48 H 0.125 0.875 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.174 7.406 12.350 25.607 hybrid contribution 0.936 0.178 -1.403 1.696 sum -20.239 7.584 10.946 24.227 Atomic orbital electron populations 1.21824 0.94052 1.02080 1.02205 1.21064 0.96215 0.96338 0.97345 1.21911 1.00978 0.95829 1.01976 1.20674 0.89674 1.01644 0.98768 1.20036 0.96586 0.94199 0.98088 1.21203 0.93089 0.98946 0.99973 1.21227 0.95386 0.97468 0.99898 1.19828 0.94736 0.94923 0.98132 1.20013 0.90721 0.99722 0.94454 0.90008 1.21617 1.01625 0.96098 0.99048 1.21546 0.88490 0.96460 0.95219 0.93405 1.22350 1.01854 0.98795 0.99488 1.60595 1.05636 1.26235 1.38207 1.19143 0.94741 0.92115 0.85380 1.21565 0.92566 1.38697 1.04228 0.91640 1.25968 1.04039 0.94943 0.94925 1.70100 1.37697 1.40916 1.08910 0.85335 0.78743 0.78926 0.77299 1.19908 1.20800 1.18618 1.21054 0.94223 0.98966 1.00285 1.21159 0.94207 0.98707 1.00167 0.91887 0.92585 0.92374 0.92520 0.92919 0.91738 0.93278 0.90627 0.89973 0.84408 0.85018 0.92468 0.92185 0.94207 0.91649 0.91525 0.95113 0.84849 1.02313 0.98818 0.92702 0.87497 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 2 C -0.09 -1.31 2.91 -10.79 -0.03 -1.34 16 3 C -0.15 -2.17 8.76 71.98 0.63 -1.54 16 4 C -0.07 -1.02 4.84 29.85 0.14 -0.87 16 5 C -0.09 -1.74 4.71 -19.87 -0.09 -1.83 16 6 C -0.11 -2.20 7.96 22.27 0.18 -2.02 16 7 C -0.12 -2.70 9.67 22.27 0.22 -2.49 16 8 C -0.08 -1.98 3.52 -19.86 -0.07 -2.05 16 9 C -0.03 -0.89 2.34 -11.54 -0.03 -0.91 16 10 H 0.08 2.24 7.88 -2.39 -0.02 2.22 16 11 C -0.13 -3.86 8.85 71.98 0.64 -3.22 16 12 C 0.09 3.37 1.99 44.91 0.09 3.46 16 13 H 0.05 1.94 7.03 -2.38 -0.02 1.92 16 14 C -0.17 -5.48 8.91 71.98 0.64 -4.84 16 15 N -0.68 -29.24 5.47 -495.55 -2.71 -31.95 16 16 C 0.21 11.68 5.24 85.56 0.45 12.13 16 17 C -0.53 -30.73 9.32 25.60 0.24 -30.50 16 18 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 19 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 20 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 21 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 C -0.13 -3.40 8.71 22.27 0.19 -3.21 16 26 C -0.12 -2.83 9.70 22.27 0.22 -2.61 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 0.84 6.26 -2.38 -0.01 0.83 16 34 H 0.08 1.01 8.09 -2.39 -0.02 1.00 16 35 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 36 H 0.14 2.02 8.04 -2.91 -0.02 2.00 16 37 H 0.13 2.50 7.95 -2.91 -0.02 2.48 16 38 H 0.06 1.97 7.61 -2.39 -0.02 1.95 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.04 1.25 7.40 -2.39 -0.02 1.23 16 41 H 0.06 1.97 7.22 -2.39 -0.02 1.96 16 42 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 43 H 0.03 1.14 7.45 -2.39 -0.02 1.13 16 44 H 0.33 13.72 8.46 -89.70 -0.76 12.96 16 45 H -0.04 -2.40 7.43 -2.39 -0.02 -2.42 16 46 H -0.01 -0.38 8.06 -2.39 -0.02 -0.40 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.11 3.08 7.10 -2.91 -0.02 3.06 16 49 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -64.19 385.08 4.26 -59.93 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.13 Total: 24.85 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.53 Total: -42.42 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -2.43 Total: -89.24 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.19 4.26 -59.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308722873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.387 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds